mRNA_M-pyrifera_M_contig13202.5878.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13202.5878.1
Unique NamemRNA_M-pyrifera_M_contig13202.5878.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig13202.5878.1 vs. uniprot
Match: D7G9E7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G9E7_ECTSI)

HSP 1 Score: 233 bits (595), Expect = 6.510e-76
Identity = 120/173 (69.36%), Postives = 139/173 (80.35%), Query Frame = 1 
Query:    1 MSGITRASPHLPSVTMVNVDDLFLVVMVCVLIEVVAGFLKWKACRVSRIEAQLVLQRQLLKTCVNKTDYTSTFVDNSKLRRQLLKVEKDAERLQSAKERDFKSATKTVRVARACVYGVMVVYMWGQPLISFSSDYLWPSTFSHALSGGREAGSVGALSIVVMFVFGLAPSFSP 519
            M+G+  ASPHLPSV  V+VD LFLVVM+C L+EVVAGF+ WK  RV+R EA L+ QRQ L+T V KT+YT+TFV+NSKL+R LLK EKD ER+QSA++R  KS  K VR  R CVYG MVV MWG+PLISFS DYLWPS+FSHALSGGR AGSVGALSIV MF+FGL P  SP
Sbjct:    1 MAGMVGASPHLPSVMAVSVDTLFLVVMMCSLVEVVAGFVMWKTSRVTRTEAALISQRQTLRTGVAKTNYTATFVENSKLKRLLLKAEKDLERIQSARDRRLKSVAKAVRAVRVCVYGSMVVLMWGRPLISFSPDYLWPSSFSHALSGGRAAGSVGALSIVAMFLFGLVPRLSP 173
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BLAST of mRNA_M-pyrifera_M_contig13202.5878.1 vs. uniprot
Match: A0A835YKR9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKR9_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 5.800e-19
Identity = 60/168 (35.71%), Postives = 88/168 (52.38%), Query Frame = 1 
Query:   22 SPHLPSVTMVNVDDLFLVVMVCVLIEVVAGFLKWKACRVSRIEAQLVLQRQLLKTCVNKTDYTSTFVDNSKLRRQLLKVEKDAERLQSAKERDFKSATKTVRVARACVYGVMVVYMWGQPLISFSSDYLWPSTFSHALSGG----REAGSVGALSIVVMFVFGLAPSF 513
            S  LP+V  +N   L L ++VCV++E+++G     A R ++ E        LLK  + KT+Y   FV+NSKL+RQL+KVEK+ ERL+  +        +  R  R   YG +V   WGQ  I F+  Y+ P     A++GG       G V    +VV+F +GL   F
Sbjct:    4 SAALPAVLAINPVGLILAILVCVIVELISGIAHAMAGRRTQAEVTYSEDVALLKVEIVKTNYPEKFVENSKLQRQLIKVEKELERLRGERAARRTKVQRWTRWLRLAAYGALVAAHWGQTAIRFTPAYVTPLG---AVAGGPLQGTPQGGVSIAGVVVLFWWGLGGRF 168
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13202.5878.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G9E7_ECTSI6.510e-7669.36Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YKR9_9STRA5.800e-1935.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13202contigM-pyrifera_M_contig13202:1230..5858 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-28_000670.1
Exons4
Model size528
Cds size528
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13202.5878.1prot_M-pyrifera_M_contig13202.5878.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13202 1230..5858 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815810.5732603-CDS-M-pyrifera_M_contig13202:1229..13281622815810.5732603-CDS-M-pyrifera_M_contig13202:1229..1328Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13202 1230..1328 +
1692277581.7356687-CDS-M-pyrifera_M_contig13202:1229..13281692277581.7356687-CDS-M-pyrifera_M_contig13202:1229..1328Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13202 1230..1328 +
1622815810.5831158-CDS-M-pyrifera_M_contig13202:2654..27531622815810.5831158-CDS-M-pyrifera_M_contig13202:2654..2753Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13202 2655..2753 +
1692277581.746153-CDS-M-pyrifera_M_contig13202:2654..27531692277581.746153-CDS-M-pyrifera_M_contig13202:2654..2753Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13202 2655..2753 +
1622815810.6762178-CDS-M-pyrifera_M_contig13202:5084..52221622815810.6762178-CDS-M-pyrifera_M_contig13202:5084..5222Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13202 5085..5222 +
1692277581.7542584-CDS-M-pyrifera_M_contig13202:5084..52221692277581.7542584-CDS-M-pyrifera_M_contig13202:5084..5222Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13202 5085..5222 +
1622815810.6910179-CDS-M-pyrifera_M_contig13202:5666..58581622815810.6910179-CDS-M-pyrifera_M_contig13202:5666..5858Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13202 5667..5858 +
1692277581.7620866-CDS-M-pyrifera_M_contig13202:5666..58581692277581.7620866-CDS-M-pyrifera_M_contig13202:5666..5858Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13202 5667..5858 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13202.5878.1

>prot_M-pyrifera_M_contig13202.5878.1 ID=prot_M-pyrifera_M_contig13202.5878.1|Name=mRNA_M-pyrifera_M_contig13202.5878.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=176bp
MSGITRASPHLPSVTMVNVDDLFLVVMVCVLIEVVAGFLKWKACRVSRIE
AQLVLQRQLLKTCVNKTDYTSTFVDNSKLRRQLLKVEKDAERLQSAKERD
FKSATKTVRVARACVYGVMVVYMWGQPLISFSSDYLWPSTFSHALSGGRE
AGSVGALSIVVMFVFGLAPSFSPVG*
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mRNA from alignment at M-pyrifera_M_contig13202:1230..5858+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13202.5878.1 ID=mRNA_M-pyrifera_M_contig13202.5878.1|Name=mRNA_M-pyrifera_M_contig13202.5878.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4629bp|location=Sequence derived from alignment at M-pyrifera_M_contig13202:1230..5858+ (Macrocystis pyrifera P11B4 male)
ATGTCGGGAATTACAAGGGCTTCGCCTCACCTGCCATCTGTGACGATGGT
CAACGTCGACGACCTCTTTCTCGTGGTCATGGTGTGCGTGCTCATCGAGG
TATTCATGTGTGATGATTCGAGTTGAGACATTCCGTAGTCGGTACTATAT
TACTGATGTCGTACATGCTTTTTTTAGTCATGGCATGTAAATGTAATATC
TCTGCAAATGGTGCGGGGGTAGAGCTGACAGAAGCTACAAGCTGGTGCTT
GTACGTGTCGCACCTACTTTAAACCTATTTTGAACCAGGGCTCTCCACGG
GTCATGACCCGACCCGCGGGTCGGATTCCGTGTTTTGTTTCAAGATCATG
GGTCGGGTCAGGTCGGGTCAAGTCGGGAGATTTTTAAACTCTCACGGATT
TGATCGGGTCGCCCTTACCCGACCCGATCCGACCTGAGCCGCGAGATTCG
ATCCGAGCCGTGAAAAGCTCTGGTTTAAACTGCGATTAAGCGGTGGTCGA
GTTTCCCATGATTTTCGAGCAGCAGAGGGCACCTACCGGCACGTAGCAAC
AATGGTGGGTGGTGCTGGAGCTGGGAGACTAGAGTTCGACTTGGGTAAAA
AAATGTCGCGTGAGAACTGTTCAAGCGGTCGCTGCTATTGAAACGCTTCA
TCCCCGCACGGAAATGTGTGGATCGAGTGAGAGTATGATGACGTTATATA
CAGTAGTGTGCCAGCGTACGAAGCCGATTCGATGCACTCGGCCGACTTTA
TATTCTCACCCCAGCCAAGTGACCCAACTGATTGCAACAAATTTCTTAGG
GTTAGGCCCCCATAACTTATCACTATAAGTGCAGTTGTCATATTTCAGAA
GCATTATTCATCTGAAGCCTACATGTATATCATTCTTCGGAGGCGGATGG
TTCATCCGCCCCGTCGTCGACTGGCATTGAACGGGCCCGCCAGAAACTGC
CCTTCAGGTGAACCGGACTTTTTTCGCAACTGCGTTCGGTCTTTACATTT
TGTGGTATCGACCTATAAGTTACATAGTGGGCTGTTTGTGGTGGTGAGGG
GACATTCTGGGTACGTCCCCGACTTTCGTAGGCGGATATGGAATATGCGC
CGGGTATGACGGATAATATCGCACGATGCCACTGTGAACCATCGCACCAG
CGTAACTGTACAATTCTTAATATACTACAAGAGCAATGCTTAATTGATTT
TCCTGGTATATTATCTCTCAACTACGTCGCCTGGGTGATCACTTGTTTCT
TGTTCGAGTGTGTCCCAAATGCTGGCCCTGAGCCGAGTGGTGACCCATGC
ATGTGATGATAGGTTGCACACTTTGTTTCCTTTAGGCTTTAATCTTTGCA
AGTACGGGTGTACCATACAGTGCTGCAGTTGTTGAGGATGCTTGACGTTC
GTGCGTTTTTGTCTCCCACCTCCAGGTCGTGGCTGGTTTTCTCAAGTGGA
AGGCATGTCGAGTATCCCGAATAGAGGCGCAATTGGTATTACAGCGCCAA
TTATTGAAGACTTGTGTTAACAAGGTGGGTACATCCAACTGCAGTCGACC
AATCGACCATCCGTCCCCGATGAGAACGCATAGGCCACGATAAACCCGCT
GTTCCCCCCTCTCCTCAATTCAGAGCTAAGAAATCTAGGCGCCTTTATCC
GGCGCATTTATCTAGAAACCTTAGTTTCTTCTCGTGGTTAGACCGGGCTT
GTAGTGAGAGACCGATAGTATGAGTGTTCGTGGTAGCTGCGCTCGGTATG
GGGCAAGGGCGAAACTCGTTTAAAAGCTAGGAGACCATGGGACCGGGCGT
GCCATGCGAAGAGGACGCCGACTACCACATGTACAGCACCAAGGTATGTA
TGTATCGGGACAAAACTCGAGGAGCAAGTCCCTGAGCGCCTGAAAACAGC
CGCTGGCCGGGCTATGCGTTTGAACAGGAGTGTGAGTTTAAGCGCCAAGA
GGCAGAGGTGATTGCCGTGTGGTCCGCCGATTGGAGGGACGCCAAGCAAC
GCGGAGATTCTTTTCGCCATCAAGGCTAGGCAATAGCTCAAGCGTTCGTT
ATTGGCAACGTATTTATGTCATTAGATACGCGCAATAACACATCGTTCTT
AGCGCTTGGTTGGCAGCACAGGCTAGAGCTCTAATGCGCGGGTTGTGGTC
CGCGTAGAAATCCGCTCCAACCGTTGGGCTAGGCTCAGCGACTCGTGGAC
ATTGCATGTGTGGATGCTTTTTGACCACTTACCTCACTCAGCGACGAGCA
ACGCGGTGGTCCCTGGACTAGAATGCTTGCGGACGATGACGTTGCATACT
CGACCGGCCTTGTTTCTGTGTGTCACTGCCCTCCAGAACTACTTGCTTTG
TCAGTTAATAGTTCAATTTATCTGCATCTCAAATGTTCTTGGTCGTTCCG
GTTTTCTCATCATGATTGTTATTTGCTCCCATGCTCCCATGCAGCTACGA
CCATTCCTTCAATACCGTTGCAGTGTGTCGTGGTTTTATTCACACTATGC
CGCTCTCTAGCGTCCTCAATTTGTGCGTTATTCGTCGATATTCGCTTTGA
CGGAAGAATCGTATTCGCATGCCCCTCCTCGTGGAAAGGAATTCACACTG
TTCGGCAGACCGTAGGTGTTAAATGGTTTGTTAACGTAGTATACCCTCAC
AAGGGCAACGACGACGTTGTTGACACTGAAAATATATTGTGTGGTGCATT
GGATTTGGCGTTGACGAGCAAACTTTAGGTTGGCACCGCCCTCCCACTGT
AGTGTGGAGTTATGGTGTACGCTATTGTACATCTAGTGTGGTTACAGTAG
TCGTTCTGGTTACAAAGCCAAAGGCACGGTGCCATCGGAGTTGTAGGAAC
GTTTTCCTCCAGTCGTTCTCGAGGCTTGCGTCACACATCCTGAATGCTTC
GGAAACCGAAAGACAACTGCACGCGGCATCCGCTGGTGCCAGCTTTGTGA
GCATTCCCCCATGAGCGAGACCATGCGCTGTATCAAAGCAAGCAGACATT
CCTAGCGGGCGTCTTTGTGAGGGTTTTGAATCGTGCTCGGGCGGGCGCCA
ACTACAGACGCCCGAAGAATACGGCTGCCATACTCTGCGTTCGAGGGGGA
TACTGCATGCCCACCCTTGCTTTTTTGGAATGGCTGCGTTTTATTGCAGC
GAGTGGTAACACTATGCTAAATGCAGTACGAAGTGTGCTCGCAGCTTATC
ATAGCCTCAACACTTGAGGTCCAGGACTTCACGGAACCGGCCACGACTTC
CCACTCAAATGTCATGGTCGTGGGTGCAGACGCGATTCAGACACGATTCA
GACACGATGCGGGAGGTCGTCAAGTGTGTCTGGAGATAATCGTCTGGGAA
AAGCCTGGCCCTATGAAGTGCAGCAGTTGTAGTGGTGTACCCACTGTCAA
CAATACGTGGCAGCTGTTTTCGTACACACCTGGTAGGAGACAATAGTTGG
CGTACGTAAGCGACGTGTGCGATAAACCTTCCTTGGGTGGGGATACAGTA
ACAGACCCTACTCCTTAACTTTCCTTAAAATTCCTACAATCGTTGCCACC
AGGAAGGCGGGTTTCTGTCCTCCCCCCCCCTACTGTTGAAGTACGGCGAC
AGCGAGGCTCTTATCGTGACCTTTTGCAGTTCTTGTTGTCGATGCAAGTC
TACTTGATGGCTAACTTTTCATTCGTCTGAAGCCGCTGGACCCGTGAGAT
TATAGAGTTTAATAAGGTGTTGGGCGTGTAAAGACACGTACTATTGTCAT
GAACATGCCCGATGGCGAGCACTCCAAGCCGATCGTCAGCCGATCCTTTG
GTGCACATCGCTTTGTCTCTACCGCTTTGTCGCTCGTCTCTCATCGGCCC
CTTAGACAGACTACACGTCGACGTTCGTGGACAATTCCAAGCTTAGACGC
CAGCTGCTCAAGGTGGAGAAGGACGCGGAAAGGCTCCAGTCAGCGAAGGA
AAGGGACTTCAAATCTGCAACGAAAACCGTCCGTGTTGCTAGGGTGAGAT
GTCAACACGAGTTGGCGTTATGTGATGCCAATTTTACTGGCCGACCGTCT
TAGGCAATTTGCCTGTTCAGCGTGTGAGTGCATGTATCGATCTTAATCCC
CCCAGCAAGAGCTTCCGACAACGATACGTATGCCGGGGCTATTCTTCCAG
AGTGAGATCGCTCAAGTCCCCGCTTCACCGTCGGCACTGACGGCCATAGG
GCGATTGGAAGATGAGATTTTTGTATCACTGCAACCGAAGGCGCGAACTC
TAGGAGCGCCTCTGCAATATCATAAATTCCGTTTCGTCCTTTTGCCAAGG
TGCCGCACACAATTTGATGCCTACTGCAAAGCAATCTCACTTTTGTTCCG
CAGATCTGGAAACGATCACATCGAAGATCTGATCCGAGTTTCGTCGATGC
GTGCTCCTCCTGTATCCAATTGTTGCCGTGCCCGCAGGCATGCGTGTACG
GCGTCATGGTTGTCTACATGTGGGGACAGCCGCTCATCTCCTTCTCCTCG
GACTATCTGTGGCCTTCAACGTTTTCGCATGCCCTGTCGGGTGGCAGAGA
GGCGGGGAGCGTGGGGGCGCTATCCATCGTTGTAATGTTTGTATTCGGGT
TGGCACCAAGTTTCTCCCCAGTGGGTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13202:1230..5858+

>mRNA_M-pyrifera_M_contig13202.5878.1 ID=mRNA_M-pyrifera_M_contig13202.5878.1|Name=mRNA_M-pyrifera_M_contig13202.5878.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1056bp|location=Sequence derived from alignment at M-pyrifera_M_contig13202:1230..5858+ (Macrocystis pyrifera P11B4 male)
ATGTCGGGAATTACAAGGGCTTCGCCTCACCTGCCATCTGTGACGATGGT
CAACGTCGACGACCTCTTTCTCGTGGTCATGGTGTGCGTGCTCATCGAGA
TGTCGGGAATTACAAGGGCTTCGCCTCACCTGCCATCTGTGACGATGGTC
AACGTCGACGACCTCTTTCTCGTGGTCATGGTGTGCGTGCTCATCGAGGT
CGTGGCTGGTTTTCTCAAGTGGAAGGCATGTCGAGTATCCCGAATAGAGG
CGCAATTGGTATTACAGCGCCAATTATTGAAGACTTGTGTTAACAAGGTC
GTGGCTGGTTTTCTCAAGTGGAAGGCATGTCGAGTATCCCGAATAGAGGC
GCAATTGGTATTACAGCGCCAATTATTGAAGACTTGTGTTAACAAGACAG
ACTACACGTCGACGTTCGTGGACAATTCCAAGCTTAGACGCCAGCTGCTC
AAGGTGGAGAAGGACGCGGAAAGGCTCCAGTCAGCGAAGGAAAGGGACTT
CAAATCTGCAACGAAAACCGTCCGTGTTGCTAGGACAGACTACACGTCGA
CGTTCGTGGACAATTCCAAGCTTAGACGCCAGCTGCTCAAGGTGGAGAAG
GACGCGGAAAGGCTCCAGTCAGCGAAGGAAAGGGACTTCAAATCTGCAAC
GAAAACCGTCCGTGTTGCTAGGGCATGCGTGTACGGCGTCATGGTTGTCT
ACATGTGGGGACAGCCGCTCATCTCCTTCTCCTCGGACTATCTGTGGCCT
TCAACGTTTTCGCATGCCCTGTCGGGTGGCAGAGAGGCGGGGAGCGTGGG
GGCGCTATCCATCGTTGTAATGTTTGTATTCGGGTTGGCACCAAGTTTCT
CCCCAGTGGGTTGAGCATGCGTGTACGGCGTCATGGTTGTCTACATGTGG
GGACAGCCGCTCATCTCCTTCTCCTCGGACTATCTGTGGCCTTCAACGTT
TTCGCATGCCCTGTCGGGTGGCAGAGAGGCGGGGAGCGTGGGGGCGCTAT
CCATCGTTGTAATGTTTGTATTCGGGTTGGCACCAAGTTTCTCCCCAGTG
GGTTGA
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