mRNA_M-pyrifera_M_contig13175.5868.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13175.5868.1
Unique NamemRNA_M-pyrifera_M_contig13175.5868.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig13175.5868.1 vs. uniprot
Match: D8LK31_ECTSI (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK31_ECTSI)

HSP 1 Score: 409 bits (1051), Expect = 2.150e-140
Identity = 202/279 (72.40%), Postives = 229/279 (82.08%), Query Frame = 1
Query:   31 QVVGAIRHKRASGEMDGEYKKLLGKLLRLHPDYYSMWNFRKEAVLQEVGRIEEA------AEQGDRA----------------EALRVLYKEELGLSVDCIQRNPKSYPAWHHHKWALQRGLDFLGGRSALEKELALCAQFLELDGRNFHCWAHRMWVAEQMSLSAQEDLDFTTAKIKQNFSNYSAFHFRSKVLPRMVDEAGCDRWQLLSDELELAHDAMFTEPADQSVWWYHHFLLTWAEEGSTAGDGAERDAERYAEILRAEASTLEELIEVEDRCK 801
            +VVGAIRHKRA+G+MD EYK+LLGKLLRLHPDYYSMWNFRKEAVL E+ RIE+A      ++ GD+A                +  + +Y+EEL LSVDCI+RNPKSYPAWHHHKWAL+RGLD LGGRSAL  +LALCA FLELDGRNFHCWAHRMWVAE+M LSA+E+ DFTT KIKQNFSNYSAFHFRSKVLPRMV+EAG DRWQLLSDEL+L HDAMFTEPADQSVWWYHHFLLTWA++G+ +      D+ERY  ILRAEA+TL ELIEVE RCK
Sbjct:   28 KVVGAIRHKRATGQMDAEYKQLLGKLLRLHPDYYSMWNFRKEAVLAELSRIEDAHSRQGGSDDGDKAAEEISSGTLLSPSVQEQQKKKIYEEELALSVDCIKRNPKSYPAWHHHKWALERGLDLLGGRSALAGDLALCATFLELDGRNFHCWAHRMWVAERMGLSAREEFDFTTDKIKQNFSNYSAFHFRSKVLPRMVEEAGHDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWADDGTDSCS----DSERYENILRAEAATLGELIEVEVRCK 302          
BLAST of mRNA_M-pyrifera_M_contig13175.5868.1 vs. uniprot
Match: A0A835Z1Z5_9STRA (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1Z5_9STRA)

HSP 1 Score: 244 bits (624), Expect = 1.450e-76
Identity = 121/237 (51.05%), Postives = 159/237 (67.09%), Query Frame = 1
Query:   94 LLGKLLRLHPDYYSMWNFRKEAVLQEVGRIEEAAEQGDRAEALRVLYKEELGLSVDCIQRNPKSYPAWHHHKWALQRGLDFLGGRSALEKELALCAQFLELDGRNFHCWAHRMWVAEQMSLSAQEDLDFTTAKIKQNFSNYSAFHFRSKVLPRMVDEAGCDR-WQLLSDELELAHDAMFTEPADQSVWWYHHFLLTWAEEGSTAGDGAERDAERYAEILRAEASTLEELIEVEDRCK 801
            ++ K++R++PDYYSMWN+RKEA L  +   E  A+ G +    +V+ ++EL L+    +RNPK Y AWHH +W L+RG D +GG +A  +EL LC QFL LD RNFHCWA+R WV EQ  LSA+ED  FTT KI +NFSNYSAFH+RSK+LP + +  G      L+  ELE+ H A FTEP DQS WWYH FL+ WA E   A  G E   ++Y E+L+ E   + EL+ VE+RCK
Sbjct:   55 VVDKVVRVNPDYYSMWNYRKEAALPILEAAEGQAKVGVQERRAQVV-EQELALAAAAFKRNPKCYSAWHHRRWVLERGADAIGGEAAYRRELELCRQFLLLDSRNFHCWAYRGWVVEQAGLSAEEDFAFTTEKILENFSNYSAFHYRSKLLPAVAEARGAGGVLTLVEQELEMVHQAFFTEPDDQSAWWYHRFLVGWAAE---ALHGTEHH-DKYPELLQKEVDCIRELLFVEERCK 286          
BLAST of mRNA_M-pyrifera_M_contig13175.5868.1 vs. uniprot
Match: A4SAM5_OSTLU (Geranylgeranyl transferase type-2 subunit alpha n=2 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A4SAM5_OSTLU)

HSP 1 Score: 175 bits (443), Expect = 3.430e-50
Identity = 95/244 (38.93%), Postives = 133/244 (54.51%), Query Frame = 1
Query:   91 KLLGKLLRLHPDYYSMWNFRKEAVLQEVGRIEEAAEQGDRAEALRVL--YKEELGLSVDCIQRNPKSYPAWHHHKWALQRGLDFLG-----GRSALEKELALCAQFLELDGRNFHCWAHRMWVAEQMSLSAQEDLDFTTAKIKQNFSNYSAFHFRSKVLPRMVDEAGCDRWQLLSDELELAHDAMFTEPADQSVWWYHHFLLTWAEEGSTAGDGAERDAERYAEILRAEASTLEELIEVEDRCK 801
            K   KLL L P+  + WN+R+E +    G     +E GD  E       + +EL +S   ++ NPKSYP+W+H KW L+R ++  G      R  LE+E  LCA  L  D RNFHCWA+R +VAE++     E+L +T  KI+ NFSNYSA+H+RS +L    +  G    + L  E ELA +A +TEP DQS W YH +L + A         A  DA+    +L  E  T  E+ ++E  CK
Sbjct:    2 KACEKLLGLCPEILTAWNYRRETIEARTGDAATTSEGGDEGEXXXXXDWWSDELRVSETALRNNPKSYPSWYHRKWVLRRMIEAFGTEEGKARETLEREAKLCADMLNADDRNFHCWAYRRFVAEKLGRGVDEELQYTLTKIENNFSNYSAWHYRSAIL----ESRGAADAETLEREFELASNAFYTEPEDQSAWMYHRWLTSRAR--------AIEDAKDRESLLERERQTCREVSDLEPTCK 233          
BLAST of mRNA_M-pyrifera_M_contig13175.5868.1 vs. uniprot
Match: A0A8J5DNR5_9CHEL (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Nymphon striatum TaxID=424472 RepID=A0A8J5DNR5_9CHEL)

HSP 1 Score: 175 bits (444), Expect = 3.490e-50
Identity = 88/215 (40.93%), Postives = 135/215 (62.79%), Query Frame = 1
Query:   55 KRASGEMDGEYKKLLGKLLRLHPDYYSMWNFRKEAVLQEVGRIEEAAEQGDRAEALRVLYKEELGLSVDCIQRNPKSYPAWHHHKWALQRGLDFLGGRSALEKELALCAQFLELDGRNFHCWAHRMWVAEQMSLSAQEDLDFTTAKIKQNFSNYSAFHFRSKVLP--------RMVDEAGCDRWQLLSDELELAHDAMFTEPADQSVWWYHHFLL 675
            KR + E+D +  KL  ++L L+PD+YS+WNFRKE +L+         ++  + E +  L+K++LG +  C++ NPKSY AWHH  W +Q        +   E+EL +C Q+L LD RNFHCW +R +V ++  +S  ++L+F++ KI+ NFSNYSA+H+RSK+LP        + +DE+       L +E EL  +A FT+P DQS W+YH +LL
Sbjct:   38 KRENRELDEDALKLTTEILSLNPDFYSLWNFRKEIILE--------FKRTRKEEEIIKLFKDDLGFTEICLRNNPKSYCAWHHRHWVMQNT-----PKPDWERELKICNQYLLLDERNFHCWDYRRFVVQESGISNNKELEFSSEKIENNFSNYSAWHYRSKLLPLVHAGNSYKKIDESK------LLEEFELVQNAAFTDPNDQSAWFYHRWLL 233          
BLAST of mRNA_M-pyrifera_M_contig13175.5868.1 vs. uniprot
Match: UPI000C78249F (geranylgeranyl transferase type-2 subunit alpha-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C78249F)

HSP 1 Score: 176 bits (447), Expect = 1.150e-48
Identity = 91/238 (38.24%), Postives = 141/238 (59.24%), Query Frame = 1
Query:   31 QVVGAIRHKRASGEMDGEYKKLLGKLLRLHPDYYSMWNFRKEAVL----------QEVGRIEEAAEQGDRAEALRV-------LYKEELGLSVDCIQRNPKSYPAWHHHKWALQRGLDFLGGRSALEKELALCAQFLELDGRNFHCWAHRMWVAEQMSLSAQEDLDFTTAKIKQNFSNYSAFHFRSKVLPRMVDEAGCDRWQLLSDELELAHDAMFTEPADQSVWWYHHFLLTWAEEG 693
            + +G +  +RA G++D +   + G++L+ +PD  ++WN RKE +L          ++VG  E+  E+ D  +   V       +   EL L+  C+  NPKSY AWHH  W L+  ++         +ELALC +FL+LD RNFHCW +R WVA++  +  Q++L+FT  KI++NFSNYSA+H+RSK+LP +  +    +   +  EL+L  +A FT+PAD S W+YH +LL    EG
Sbjct:   30 KAMGVLLSRRAEGKLDDQQLVISGQVLQGNPDISTLWNIRKEILLHYINLGTQKEKDVGEGEKGQEEVDCGKEENVPMHDQDEMLSSELDLTQQCLIANPKSYGAWHHRTWCLEHMIN-----PDWSRELALCRKFLKLDERNFHCWDYRKWVADKAGVKPQQELEFTLEKIEENFSNYSAWHYRSKLLPLLNPDTSSIQEDQVHKELDLVQNAAFTDPADSSAWFYHTWLLGQESEG 262          
BLAST of mRNA_M-pyrifera_M_contig13175.5868.1 vs. uniprot
Match: UPI000CEFEA1D (geranylgeranyl transferase type-2 subunit alpha-like n=1 Tax=Terrapene carolina triunguis TaxID=2587831 RepID=UPI000CEFEA1D)

HSP 1 Score: 165 bits (418), Expect = 1.950e-46
Identity = 87/222 (39.19%), Postives = 131/222 (59.01%), Query Frame = 1
Query:   19 RACVQVVGAIRHKRASGEMDGEYKKLLGKLLRLHPDYYSMWNFRKEAVLQEVGRIEEAAEQGDRAEALRVLYKEELGLSVDCIQRNPKSYPAWHHHKWALQRGLDFLGGRSALEKELALCAQFLELDGRNFHCWAHRMWVAEQMSLSAQEDLDFTTAKIKQNFSNYSAFHFRSKVLPRMVDEA---GCDRWQLLSDELELAHDAMFTEPADQSVWWYHHFLL 675
            R  V    AI  KR +G++D E  +L  ++L ++PD+ ++WNFR+E +L+         E     E ++ L + EL     C++ NPKSY  WHH  W ++             +EL LCA+FLE+D RNFHCW +R +V ++  +SA ++L FT   I +NFSNYS++H+RS++LPR+  +    G     +L  ELEL  +A FT+P DQS W+YH +LL
Sbjct:   26 RQYVAATTAIFEKRKTGQLDKEALELTNQILGVNPDFATLWNFRREILLR--------LEPEGSPEEMQSLCRGELSFLESCLRVNPKSYGTWHHRCWVMEHV-----PHPDWARELELCAKFLEIDERNFHCWDYRRFVVQRAQVSAADELHFTDRLITRNFSNYSSWHYRSRLLPRLHPDPRQPGRPTEAVLLKELELVQNAFFTDPNDQSAWFYHRWLL 234          
BLAST of mRNA_M-pyrifera_M_contig13175.5868.1 vs. uniprot
Match: A0A8B7Z413_ACAPL (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7Z413_ACAPL)

HSP 1 Score: 166 bits (421), Expect = 3.530e-46
Identity = 87/210 (41.43%), Postives = 122/210 (58.10%), Query Frame = 1
Query:   55 KRASGEMDGEYKKLLGKLLRLHPDYYSMWNFRKEAVLQEVGRIEEAAEQGDRAEALRVLYKEELGLSVDCIQRNPKSYPAWHHHKWALQRGLDFLGGRSALEKELALCAQFLELDGRNFHCWAHRMWVAEQMSLSAQEDLDFTTAKIKQNFSNYSAFHFRSKVLPRM---VDEAGCDRWQLLSDELELAHDAMFTEPADQSVWWYHHFLL 675
            KR  GE D E  +L  +LL  +PD+YS+WN+R+E  L  +    E+ E  DR       Y +EL     C+  NPKSY +WHH  W L    +        ++E+ALC Q+LE D RNFHCW +R +V  +  +   E+L F+ AKI  NFSNYS++H+RSK+LP +    +  G  +  +L  E EL  +A FT+P DQS W+YH +LL
Sbjct:   38 KRKDGEFDDEALELTSQLLSANPDFYSLWNYRREIFLN-LAESRESQEMQDR-------YSKELVFLESCLMVNPKSYGSWHHRGWVLDHMPE-----PDWKREVALCNQYLEYDERNFHCWDYRRFVVSRAKVQPAEELKFSDAKITSNFSNYSSWHYRSKLLPLLHPDPESKGRVKEDILLQEYELVQNAFFTDPNDQSAWFYHRWLL 234          
BLAST of mRNA_M-pyrifera_M_contig13175.5868.1 vs. uniprot
Match: A0A087TEC0_STEMI (Geranylgeranyl transferase type-2 subunit alpha (Fragment) n=1 Tax=Stegodyphus mimosarum TaxID=407821 RepID=A0A087TEC0_STEMI)

HSP 1 Score: 164 bits (416), Expect = 1.090e-45
Identity = 85/209 (40.67%), Postives = 127/209 (60.77%), Query Frame = 1
Query:   55 KRASGEMDGEYKKLLGKLLRLHPDYYSMWNFRKEAVLQEVGRIEEAAEQGDRAEALRVLYKEELGLSVDCIQRNPKSYPAWHHHKWALQRGLDFLGGRSALEKELALCAQFLELDGRNFHCWAHRMWVAEQMSLSAQEDLDFTTAKIKQNFSNYSAFHFRSKVLPRMVDE--AGCDRWQLLSDELELAHDAMFTEPADQSVWWYHHFLL 675
            KR  GE D E  +L G+LL  +PD+Y++WN+R+E +L          +     E L+ L   ELGL+ +C++ NPKSY AWHH  W ++   D     +  +KEL LC  FL  D RNFHCW +R  V ++  ++  E+L ++T  I+ NFSNYSA+H+RS +LP +  +      +  +L  EL++  +A FT+P+DQSVW+YH +LL
Sbjct:   38 KREHGEYDEEGLELTGRLLEQNPDFYTLWNYRREILL--------FLKPTKNQEELKALTLVELGLTQNCLRVNPKSYGAWHHRFWVMEFDPD-----ADWKKELKLCGYFLSKDERNFHCWDYRRLVVKKCGVAPDEELTYSTELIEANFSNYSAWHYRSTLLPIVYPDHSKASLKEDILLKELDIVQNAAFTDPSDQSVWFYHRWLL 233          
BLAST of mRNA_M-pyrifera_M_contig13175.5868.1 vs. uniprot
Match: A0A4D9DIG4_9SAUR (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Platysternon megacephalum TaxID=55544 RepID=A0A4D9DIG4_9SAUR)

HSP 1 Score: 168 bits (426), Expect = 1.740e-45
Identity = 89/226 (39.38%), Postives = 134/226 (59.29%), Query Frame = 1
Query:   19 RACVQVVGAIRHKRASGEMDGEYKKLLGKLLRLHPDYYSMWNFRKEAVLQEVGRIEEAAEQGDRAEALRVLYKEELGLSVDCIQRNPKSYPAWHHHKWALQRGLDFLGGRSALEKELALCAQFLELDGRNFHCWAHRMWVAEQMSLSAQEDLDFTTAKIKQNFSNYSAFHFRSKVLPRMVDEA---GCDRWQLLSDELELAHDAMFTEPADQSVWWYHHFLLTWAE 687
            R  V    AI  KR +G++D E  +L  ++L ++PD+ ++WNFR+E +L          E+    E +++L + EL     C++ NPKSY  WHH  W ++             +EL LCA+FLE+D RNFHCW +R +V ++  +SA ++L FT   I +NFSNYS++H+RS++LPR+  +    G     +L  ELEL  +A FT+P DQS W+YH +LL  AE
Sbjct:   31 RQYVAATTAIFEKRKTGQLDKEALELTNQILGVNPDFATLWNFRREIIL--------CLEREGSPEEMQLLCRGELSFLESCLRVNPKSYGTWHHRCWVMEHV-----PHPDWARELELCAKFLEIDERNFHCWDYRRFVVQRAQVSAADELHFTDHLITRNFSNYSSWHYRSRLLPRLHPDPRQPGRPTEAVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAE 243          
BLAST of mRNA_M-pyrifera_M_contig13175.5868.1 vs. uniprot
Match: A0A821PVZ3_9NEOB (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A821PVZ3_9NEOB)

HSP 1 Score: 162 bits (410), Expect = 2.660e-45
Identity = 86/220 (39.09%), Postives = 130/220 (59.09%), Query Frame = 1
Query:   28 VQVVGAIRHKRASGEMDGEYKKLLGKLLRLHPDYYSMWNFRKEAVLQEVGRIEEAAEQGDRA-EALRVLYKEELGLSVDCIQRNPKSYPAWHHHKWALQRGLDFLGGRSALEKELALCAQFLELDGRNFHCWAHRMWVAEQMSLSAQEDLDFTTAKIKQNFSNYSAFHFRSKVLPRMVDEA---GCDRWQLLSDELELAHDAMFTEPADQSVWWYHHFLL 675
            V    A  +KR  G++D E  ++  ++L L+PD+ S+WN R+E  L         A   DR+ E +R LY  EL    +C++ NPKSY  W+H  W ++   +         +EL LC QFLE+D RNFHCW +R +VA+   +   ++L++T+  I +NFSNYS++H+RSK+LP++  +    G     +L  ELEL  +A FT+P DQS W+YH +LL
Sbjct:   29 VSATQAAFNKRKGGQLDKEALEITAQILALNPDFASLWNLRREVFL---------ALGSDRSDEEMRSLYLSELSFLQNCLRVNPKSYGTWYHRCWIMKHMPE-----PDWARELTLCNQFLEIDERNFHCWGYRRFVAQSFHVPPSDELEYTSDLITKNFSNYSSWHYRSKLLPQIHPDPQHLGRATENVLLSELELVQNAFFTDPNDQSAWFYHRWLL 234          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13175.5868.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LK31_ECTSI2.150e-14072.40Geranylgeranyl transferase type-2 subunit alpha n=... [more]
A0A835Z1Z5_9STRA1.450e-7651.05Geranylgeranyl transferase type-2 subunit alpha n=... [more]
A4SAM5_OSTLU3.430e-5038.93Geranylgeranyl transferase type-2 subunit alpha n=... [more]
A0A8J5DNR5_9CHEL3.490e-5040.93Geranylgeranyl transferase type-2 subunit alpha n=... [more]
UPI000C78249F1.150e-4838.24geranylgeranyl transferase type-2 subunit alpha-li... [more]
UPI000CEFEA1D1.950e-4639.19geranylgeranyl transferase type-2 subunit alpha-li... [more]
A0A8B7Z413_ACAPL3.530e-4641.43Geranylgeranyl transferase type-2 subunit alpha n=... [more]
A0A087TEC0_STEMI1.090e-4540.67Geranylgeranyl transferase type-2 subunit alpha (F... [more]
A0A4D9DIG4_9SAUR1.740e-4539.38Geranylgeranyl transferase type-2 subunit alpha n=... [more]
A0A821PVZ3_9NEOB2.660e-4539.09Geranylgeranyl transferase type-2 subunit alpha n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13175contigM-pyrifera_M_contig13175:4428..8911 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score413.7
Seed ortholog evalue6.6e-113
Seed eggNOG ortholog2880.D8LK31
Preferred nameRABGGTA
KEGG koko:K14050,ko:K20306
Hectar predicted targeting categoryother localisation
GOsGO:0003008,GO:0003674,GO:0003824,GO:0004659,GO:0004661,GO:0004663,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005777,GO:0005829,GO:0005886,GO:0005968,GO:0006464,GO:0006605,GO:0006612,GO:0006807,GO:0006810,GO:0006886,GO:0006888,GO:0007600,GO:0007601,GO:0008104,GO:0008150,GO:0008152,GO:0008318,GO:0009987,GO:0010035,GO:0010038,GO:0010941,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0016740,GO:0016765,GO:0017016,GO:0017137,GO:0018342,GO:0018344,GO:0019538,GO:0019899,GO:0022607,GO:0031267,GO:0031974,GO:0031981,GO:0032501,GO:0032991,GO:0033036,GO:0034613,GO:0036211,GO:0042221,GO:0042579,GO:0042886,GO:0042981,GO:0043067,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043687,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046686,GO:0046907,GO:0046982,GO:0046983,GO:0048193,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050953,GO:0051020,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0090150,GO:0097354,GO:0140096,GO:1901564,GO:1902494,GO:1990234,GO:1990778
EggNOG free text desc.protein geranylgeranylation
EggNOG OGsCOG5536@1,KOG0529@2759
Ec32 ortholog descriptionProtein prenyltransferase, alpha subunit
Ec32 orthologEc-06_007980.1
EC2.5.1.60
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01006,ko04131
Exons5
Model size801
Cds size801
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13175.5868.1prot_M-pyrifera_M_contig13175.5868.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13175 4428..8911 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815809.447085-CDS-M-pyrifera_M_contig13175:4427..45981622815809.447085-CDS-M-pyrifera_M_contig13175:4427..4598Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13175 4428..4598 +
1692277580.9838169-CDS-M-pyrifera_M_contig13175:4427..45981692277580.9838169-CDS-M-pyrifera_M_contig13175:4427..4598Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13175 4428..4598 +
1622815809.4610574-CDS-M-pyrifera_M_contig13175:5742..59181622815809.4610574-CDS-M-pyrifera_M_contig13175:5742..5918Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13175 5743..5918 +
1692277581.0047872-CDS-M-pyrifera_M_contig13175:5742..59181692277581.0047872-CDS-M-pyrifera_M_contig13175:5742..5918Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13175 5743..5918 +
1622815809.4746-CDS-M-pyrifera_M_contig13175:6152..63061622815809.4746-CDS-M-pyrifera_M_contig13175:6152..6306Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13175 6153..6306 +
1692277581.014809-CDS-M-pyrifera_M_contig13175:6152..63061692277581.014809-CDS-M-pyrifera_M_contig13175:6152..6306Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13175 6153..6306 +
1622815809.48921-CDS-M-pyrifera_M_contig13175:7346..74631622815809.48921-CDS-M-pyrifera_M_contig13175:7346..7463Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13175 7347..7463 +
1692277581.0250235-CDS-M-pyrifera_M_contig13175:7346..74631692277581.0250235-CDS-M-pyrifera_M_contig13175:7346..7463Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13175 7347..7463 +
1622815809.5041785-CDS-M-pyrifera_M_contig13175:8728..89111622815809.5041785-CDS-M-pyrifera_M_contig13175:8728..8911Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13175 8729..8911 +
1692277581.0346239-CDS-M-pyrifera_M_contig13175:8728..89111692277581.0346239-CDS-M-pyrifera_M_contig13175:8728..8911Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13175 8729..8911 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13175.5868.1

>prot_M-pyrifera_M_contig13175.5868.1 ID=prot_M-pyrifera_M_contig13175.5868.1|Name=mRNA_M-pyrifera_M_contig13175.5868.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=267bp
MTSARRRACVQVVGAIRHKRASGEMDGEYKKLLGKLLRLHPDYYSMWNFR
KEAVLQEVGRIEEAAEQGDRAEALRVLYKEELGLSVDCIQRNPKSYPAWH
HHKWALQRGLDFLGGRSALEKELALCAQFLELDGRNFHCWAHRMWVAEQM
SLSAQEDLDFTTAKIKQNFSNYSAFHFRSKVLPRMVDEAGCDRWQLLSDE
LELAHDAMFTEPADQSVWWYHHFLLTWAEEGSTAGDGAERDAERYAEILR
AEASTLEELIEVEDRCK
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mRNA from alignment at M-pyrifera_M_contig13175:4428..8911+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13175.5868.1 ID=mRNA_M-pyrifera_M_contig13175.5868.1|Name=mRNA_M-pyrifera_M_contig13175.5868.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4484bp|location=Sequence derived from alignment at M-pyrifera_M_contig13175:4428..8911+ (Macrocystis pyrifera P11B4 male)
ATGACATCGGCGCGACGGCGTGCGTGTGTGCAGGTAGTGGGTGCCATCCG ACACAAGCGCGCGTCGGGCGAGATGGACGGGGAGTACAAGAAGCTCCTCG GCAAGCTCCTGCGCCTGCACCCGGACTACTACTCCATGTGGAACTTCCGG AAGGAGGCCGTCCTGCAGGAGGTGGGTGACCAATCAGAAGACGTAAAGAA CACTTCCAGCACTAATTTATCCTGCTCTAGTATGCGGAGTGCGAAGTATA TATTTATCCGTGCTTCTTTATTACTACTACTATACTGTAGAGTATTGCGG GGGGGGGTAATGTAGCAAGAATCAGAACCCAAGATGGACAACACAAATCA TATATCGCCCCTATGTTCAGACACCATATTCGGCTGTGTGATTAATGTAC TCCCCGAAATAGCATAGTGTAGCAAAATAGTCTTAAAAGTAGTATACCGG TATAGTATTAATAGTACTTGTAGTGTCATTGCTAGTATTGGCATGTGTAT TCGCCATGTACCTGTGATATATTCATCGTACGAGTAGGTACGGTATGTAT ACACGACGGCGCGGCGGCCAAGGGTGCGGGGTCGATCAATTCCGCTCGTT ACGATGAATTTTTGGTACTGTACATACCTGCTGTAGCTGTGAGTGTAGTA GCTTCACTTCAAGCAGAGGTGCTTCTAGCTGCCTGTTTTCAGTCACTCTG TGGTCGCGTCCGGCGCGCGCCTCTCTGCTGTGTGCTACAGGACGGCCGTC TCCTAAGCACGAGGAGTTTGGGGTACTCTTTAAGGGTGCGCCCCCACCGT GTGTACCGCCGTCCTCATACTGGCCTCCCCCCCCCGCCCCGCATACGACT ACCGCTGTGCATGATGAGTACACCCCCCACCCCCCGCCCGCCCGCCCCGC AGTCGTTTTGTTCATACTTTGTTTGTCCCCCGGCTGATTGGTTAGATTTA CAGCTTAAGCTCACCACGCTACCACATGTCGTGTGCCAATTTAACCCGTC GTCGTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGAGAGT TGGTGACGTGGGAGGGAGGGAAGGAGGGTTGCGGTTTAAAGGCGGACAAA TCTCTGCACCCAGAGGGTGAAAGCAGTATCGTAACCTCACACGAGTTGTT GGTGTCTCCCTCTACCGCAAGCATCCGTCGTGAAGCACCTTTCGCCTTTT CCAGGCTTTGCATCGCTTTCCAATCTCAGTATTTATAGCTCGGATCCACC CCACCTCACCCCACCCCACCCCACCCTCTTGACGATGCCGGCGATGACGA TGACGAACGATGAAGGTGGGCCGAATAGAAGAGGCCGCTGAACAAGGGGA CAGGGCAGAGGCCCTGCGGGTTTTGTACAAGGAAGAGCTCGGCTTGAGTG TGGACTGCATCCAGCGGAACCCCAAGTCGTACCCGGCCTGGCACCACCAC AAGTGGGCGCTGCAGAGGGGGCTTGACTTCCTGGGGGGAAGGTGACGGTG ACGGCTGCAATTTCCGGTTTGACCGACCGTGAGAGGGATGGAGAAAGCAG AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGCACGACTAGAAT TCGACGCGTTTTTTGTTCACTCGCCGCGTCTCCCCCCGTCCCCGTCCCCG TCCTCCCCCCCCCTGCGCCCTTGTTTCCGTTTGTTTTCCTTTCGAAACCG TCCCGTCGGACAATAAAACGTGTAGATCGGCGCTGGAGAAGGAGCTGGCG CTGTGCGCGCAGTTCTTGGAGCTGGACGGGCGGAACTTCCACTGCTGGGC GCACCGCATGTGGGTGGCGGAGCAGATGTCGCTCTCCGCGCAGGAAGACC TGGACTTCACCACCGCCAAGATCAAGCAGGTGTGTACCGCCTCCGCCGCC TAGCATATATTAGCGCAGCAACTGTTCGTAGCAACCGTAAACGTTGAACG TGTGTGCTGACTGCTGACAAGCTAGTAATAGTGCTGACCGCCTCCTGGCG ACACGAAGAACGTCAGTACCACGTATTGTTTTGCGTTATGTTTCGCTCGA GAGCGGTACGGAGGAGGCATGTGCCCGCCGGGGGGGGGGGGGGGGGGGGG GGGGTCTCCGCAAGGTATAGAAATCCGACACTTGGGTAATATTTGATTGG TGGCGAGTCCCAGAGTCAGCCGTACCACACCCGGCCCGGTTTNNNNNNNN NNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG GGGGGGGGGGGGGGGGGGGGTCCTACGCACGATATGTATATCCGATACTT GTGCATTATATATTTCGTACCAGTGCCAGGTATAGACTGTACCACCACTG GCGCGTTTTTTCCCCTTCCCATCGTGTACCGACCGGGCGGAGGGTGTCGA AATACCCTTCCCACTCGCCCGACCGCCTGCCTGCCTGCCTGCCTCCCCCC GCGCATTTCCGTTAAATCATACCCTACGTGTACGTGGGGAAGGAGTGAGG CCACCCGTGCGTGTGTGCGTGTAAGTTGGTTATGATTGATGCTACCTTTA TCTTGGTGCGTGTGCGTGTGCTTCGATCGTGTTTTTTGTGTATTTGTTTC CGTGTGTTTTTCTGGTGTGTTTGTTTCTATTATTACGGGGGACCATAGTA AATAGGACCAAATATTGTTAGTACAAATAGGTGAATATTATAGGTTTTTG TGTGTACCGTAGGTCCTGTTTACTACGGTCCTCCGTAATAATAGTTGAAA GCTTCGCTATTTCGTTGCCGTCAGTAGGCCACCGAATCTCATGCTAAACC TTGAAATCTCATGCTAAACCTTGAACATCAGTTGCCGGTTGATTCGGCGT GCTTGTTTGTCTGTCTGTCTGTCTGTTGTCGATTGGTCGCGCTCGTTTTA TGTCTCTCGGTCCACCCAGAATTTCAGCAACTACAGCGCCTTCCACTTCA GGAGCAAGGTACTGCCGCGAATGGTCGACGAAGCCGGCTGCGATCGATGG CAGCTGCTGTCCGACGAGCTGGAGCTCGCGCACGACGTGAGTGATTATGC CCCTGGTACGCCTTGTGGCGTCTTGCCGCTCGAGCGAGCACTTACCCGGT ATGCTACATAGGAGACCGCTGTTTGGCCCCTTGACTTGACCGCCCCTCTT TATTAGAACCAGCACGACAGGGACAAAATATTGTAGGAGACCCCGGTTTG ATTCCTTTAACTGACCACCCCCCCCGTACACTAGAACCAGTATAACACAA TGGGGCCAAAATATTCTAGGAGACCCCTACGCCGAAAACAGTCTAATAGG GATAAAATGTGATGTTCGAAGGAAACCGCGATTTGTTTGACCCCTCGGCT GACCCCCCCCCCATGTACACTAAAACTGGTATAATAGGGACAACATATGC TAGGAGACCGCGGTTTGTCTGACCCCTCGAGGGAGCTCTAAAACTGGTAT AATAGGGACAACATATGCTAGGAGACCGCGGTTTGTCTGACCCCTTGAGG GAGCTCTAAAACTGGTATAATAGGGACAACATATGCTAGGAGACCTCGGT TTGGCTCATTGACCAACCGCCCCCCCCCTACACTAGATATGGTACGATAG GACCAAAATAGGCCTTAGCGCGCCCACAGAGATGGATTGCCTTGCGTAGT GCGTGTGGCATCAATGAGGCTGTTTTTGCCTGCGGCCATGGACCGCAACA GGTTGTCGCTGCCTGACTTGTTGCTCGAAATCTCAACAATATATCCCCCC CCACCGGGGAGAAACTCCACTTTGAACGGGGGGCTCAGGTTGTTCACATT GCGGCACGCGATGAATGCCCACCCGGGAAATTATGCATTTTTAACAGATT CAAAAATTGACGTTGATGCATACGGGGGGGGGCGGTCGCGGTTTATCGGG AAAAGATGCTGCCATGGTTGACGTCTCTCTCTTGCCCCTTGACGGACGGA CCGCCATCAAGGAAACTCCCCACACCAAAACTAGTTGTGTGTGTCCAAAA CAAAATGCCTTGACGGGTCGAAACTATTAATACTACATAAACAAAGCACA TTTGGTGTCGTGACGTATGTTGTTTTGTGTTTAGTTGTGTATGTCGTGCC GTCGTGTGGTCTCGATGGCGGTGTGTGCCGTGGGCAGTATCTGTCGGGTG TCGGGCTGTTGTTCGTTTGTGTGCGGTTGGAGGCCGTGATGCGCCCTGTT CTCGTTGCCCGCCCCGTGTGTGGTCGTTGCGCGGTGGGTCTGCCATTGCT AAAAGCGACCTATCCCGACCGACCGACCCCTTAATTGCTGGCGCACCGCA GGCAATGTTCACAGAGCCCGCCGACCAGAGCGTGTGGTGGTACCACCACT TTTTGCTGACGTGGGCGGAAGAAGGTTCAACCGCCGGCGATGGCGCGGAG CGTGACGCGGAGCGTTACGCGGAAATTCTTCGCGCCGAGGCGTCCACGCT GGAGGAGCTGATCGAGGTGGAGGACCGATGTAAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13175:4428..8911+

>mRNA_M-pyrifera_M_contig13175.5868.1 ID=mRNA_M-pyrifera_M_contig13175.5868.1|Name=mRNA_M-pyrifera_M_contig13175.5868.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1602bp|location=Sequence derived from alignment at M-pyrifera_M_contig13175:4428..8911+ (Macrocystis pyrifera P11B4 male)
ATGACATCGGCGCGACGGCGTGCGTGTGTGCAGGTAGTGGGTGCCATCCG
ACACAAGCGCGCGTCGGGCGAGATGGACGGGGAGTACAAGAAGCTCCTCG
GCAAGCTCCTGCGCCTGCACCCGGACTACTACTCCATGTGGAACTTCCGG
AAGGAGGCCGTCCTGCAGGAGATGACATCGGCGCGACGGCGTGCGTGTGT
GCAGGTAGTGGGTGCCATCCGACACAAGCGCGCGTCGGGCGAGATGGACG
GGGAGTACAAGAAGCTCCTCGGCAAGCTCCTGCGCCTGCACCCGGACTAC
TACTCCATGTGGAACTTCCGGAAGGAGGCCGTCCTGCAGGAGGTGGGCCG
AATAGAAGAGGCCGCTGAACAAGGGGACAGGGCAGAGGCCCTGCGGGTTT
TGTACAAGGAAGAGCTCGGCTTGAGTGTGGACTGCATCCAGCGGAACCCC
AAGTCGTACCCGGCCTGGCACCACCACAAGTGGGCGCTGCAGAGGGGGCT
TGACTTCCTGGGGGGAAGGTGGGCCGAATAGAAGAGGCCGCTGAACAAGG
GGACAGGGCAGAGGCCCTGCGGGTTTTGTACAAGGAAGAGCTCGGCTTGA
GTGTGGACTGCATCCAGCGGAACCCCAAGTCGTACCCGGCCTGGCACCAC
CACAAGTGGGCGCTGCAGAGGGGGCTTGACTTCCTGGGGGGAAGATCGGC
GCTGGAGAAGGAGCTGGCGCTGTGCGCGCAGTTCTTGGAGCTGGACGGGC
GGAACTTCCACTGCTGGGCGCACCGCATGTGGGTGGCGGAGCAGATGTCG
CTCTCCGCGCAGGAAGACCTGGACTTCACCACCGCCAAGATCAAGCAGAT
CGGCGCTGGAGAAGGAGCTGGCGCTGTGCGCGCAGTTCTTGGAGCTGGAC
GGGCGGAACTTCCACTGCTGGGCGCACCGCATGTGGGTGGCGGAGCAGAT
GTCGCTCTCCGCGCAGGAAGACCTGGACTTCACCACCGCCAAGATCAAGC
AGAATTTCAGCAACTACAGCGCCTTCCACTTCAGGAGCAAGGTACTGCCG
CGAATGGTCGACGAAGCCGGCTGCGATCGATGGCAGCTGCTGTCCGACGA
GCTGGAGCTCGCGCACGACAATTTCAGCAACTACAGCGCCTTCCACTTCA
GGAGCAAGGTACTGCCGCGAATGGTCGACGAAGCCGGCTGCGATCGATGG
CAGCTGCTGTCCGACGAGCTGGAGCTCGCGCACGACGCAATGTTCACAGA
GCCCGCCGACCAGAGCGTGTGGTGGTACCACCACTTTTTGCTGACGTGGG
CGGAAGAAGGTTCAACCGCCGGCGATGGCGCGGAGCGTGACGCGGAGCGT
TACGCGGAAATTCTTCGCGCCGAGGCGTCCACGCTGGAGGAGCTGATCGA
GGTGGAGGACCGATGTAAAGCAATGTTCACAGAGCCCGCCGACCAGAGCG
TGTGGTGGTACCACCACTTTTTGCTGACGTGGGCGGAAGAAGGTTCAACC
GCCGGCGATGGCGCGGAGCGTGACGCGGAGCGTTACGCGGAAATTCTTCG
CGCCGAGGCGTCCACGCTGGAGGAGCTGATCGAGGTGGAGGACCGATGTA
AA
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