mRNA_M-pyrifera_M_contig13141.5861.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13141.5861.1
Unique NamemRNA_M-pyrifera_M_contig13141.5861.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13141.5861.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13141contigM-pyrifera_M_contig13141:4016..4445 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size432
Cds size429
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815808.9113374-CDS-M-pyrifera_M_contig13141:4015..44441622815808.9113374-CDS-M-pyrifera_M_contig13141:4015..4444Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13141 4016..4444 +
1692277580.668849-CDS-M-pyrifera_M_contig13141:4015..44441692277580.668849-CDS-M-pyrifera_M_contig13141:4015..4444Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13141 4016..4444 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13141.5861.1prot_M-pyrifera_M_contig13141.5861.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13141 4016..4444 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13141.5861.1

>prot_M-pyrifera_M_contig13141.5861.1 ID=prot_M-pyrifera_M_contig13141.5861.1|Name=mRNA_M-pyrifera_M_contig13141.5861.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=143bp
DIGRQRSPPPSRTTASAKRGRDDGAGDGNEKFTSNSNSNSSSSSSVTATA
SSSSEDSGAERCEERGDDKAINGSECSGRSGDSGDGGGGGGDSRDTTPPG
QLPVRKKFRPYDFIGRTPSPSAVQFNPYLTPPVPRPVHVWMVH
back to top

mRNA from alignment at M-pyrifera_M_contig13141:4016..4445+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13141.5861.1 ID=mRNA_M-pyrifera_M_contig13141.5861.1|Name=mRNA_M-pyrifera_M_contig13141.5861.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=430bp|location=Sequence derived from alignment at M-pyrifera_M_contig13141:4016..4445+ (Macrocystis pyrifera P11B4 male)
GATATCGGCCGCCAGCGGTCGCCGCCACCATCGCGCACCACCGCTAGCGC
TAAGCGCGGGCGGGACGACGGAGCCGGTGACGGAAACGAGAAGTTCACCA
GCAACAGCAACAGCAACAGCAGCAGCAGCAGCAGCGTCACCGCCACCGCC
AGCAGTAGCAGCGAAGATAGCGGTGCAGAAAGGTGCGAAGAACGAGGAGA
TGACAAGGCCATAAACGGTAGCGAATGCAGCGGCCGCAGCGGCGACAGCG
GTGATGGTGGTGGTGGTGGTGGCGACAGCAGAGACACTACTCCTCCTGGT
CAACTTCCGGTTCGGAAGAAGTTCCGACCGTATGACTTCATCGGCCGTAC
CCCATCGCCATCTGCCGTCCAGTTCAACCCCTACTTGACGCCGCCCGTGC
CACGCCCCGTTCATGTCTGGATGGTGCACC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig13141:4016..4445+

>mRNA_M-pyrifera_M_contig13141.5861.1 ID=mRNA_M-pyrifera_M_contig13141.5861.1|Name=mRNA_M-pyrifera_M_contig13141.5861.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=858bp|location=Sequence derived from alignment at M-pyrifera_M_contig13141:4016..4445+ (Macrocystis pyrifera P11B4 male)
GATATCGGCCGCCAGCGGTCGCCGCCACCATCGCGCACCACCGCTAGCGC
TAAGCGCGGGCGGGACGACGGAGCCGGTGACGGAAACGAGAAGTTCACCA
GCAACAGCAACAGCAACAGCAGCAGCAGCAGCAGCGTCACCGCCACCGCC
AGCAGTAGCAGCGAAGATAGCGGTGCAGAAAGGTGCGAAGAACGAGGAGA
TGACAAGGCCATAAACGGTAGCGAATGCAGCGGCCGCAGCGGCGACAGCG
GTGATGGTGGTGGTGGTGGTGGCGACAGCAGAGACACTACTCCTCCTGGT
CAACTTCCGGTTCGGAAGAAGTTCCGACCGTATGACTTCATCGGCCGTAC
CCCATCGCCATCTGCCGTCCAGTTCAACCCCTACTTGACGCCGCCCGTGC
CACGCCCCGTTCATGTCTGGATGGTGCACGATATCGGCCGCCAGCGGTCG
CCGCCACCATCGCGCACCACCGCTAGCGCTAAGCGCGGGCGGGACGACGG
AGCCGGTGACGGAAACGAGAAGTTCACCAGCAACAGCAACAGCAACAGCA
GCAGCAGCAGCAGCGTCACCGCCACCGCCAGCAGTAGCAGCGAAGATAGC
GGTGCAGAAAGGTGCGAAGAACGAGGAGATGACAAGGCCATAAACGGTAG
CGAATGCAGCGGCCGCAGCGGCGACAGCGGTGATGGTGGTGGTGGTGGTG
GCGACAGCAGAGACACTACTCCTCCTGGTCAACTTCCGGTTCGGAAGAAG
TTCCGACCGTATGACTTCATCGGCCGTACCCCATCGCCATCTGCCGTCCA
GTTCAACCCCTACTTGACGCCGCCCGTGCCACGCCCCGTTCATGTCTGGA
TGGTGCAC
back to top