mRNA_M-pyrifera_M_contig13141.5860.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13141.5860.1
Unique NamemRNA_M-pyrifera_M_contig13141.5860.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13141.5860.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13141contigM-pyrifera_M_contig13141:2458..3853 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size341
Cds size339
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815808.864863-CDS-M-pyrifera_M_contig13141:2457..25591622815808.864863-CDS-M-pyrifera_M_contig13141:2457..2559Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13141 2458..2559 +
1692277580.6462123-CDS-M-pyrifera_M_contig13141:2457..25591692277580.6462123-CDS-M-pyrifera_M_contig13141:2457..2559Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13141 2458..2559 +
1622815808.8779595-CDS-M-pyrifera_M_contig13141:3616..38531622815808.8779595-CDS-M-pyrifera_M_contig13141:3616..3853Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13141 3617..3853 +
1692277580.6568239-CDS-M-pyrifera_M_contig13141:3616..38531692277580.6568239-CDS-M-pyrifera_M_contig13141:3616..3853Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13141 3617..3853 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13141.5860.1prot_M-pyrifera_M_contig13141.5860.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13141 2458..3853 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13141.5860.1

>prot_M-pyrifera_M_contig13141.5860.1 ID=prot_M-pyrifera_M_contig13141.5860.1|Name=mRNA_M-pyrifera_M_contig13141.5860.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=113bp
MVASGPGVFELQMAFVDEDADHTMVLPVAMRVKQEKSWSAQARAFAAVRR
DAVPASIGTASRPVQLPVVLSPGMHFSSIPETMRHHRESPPFPSSAPPYR
HPLQEMPLPRSTY
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mRNA from alignment at M-pyrifera_M_contig13141:2458..3853+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13141.5860.1 ID=mRNA_M-pyrifera_M_contig13141.5860.1|Name=mRNA_M-pyrifera_M_contig13141.5860.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1396bp|location=Sequence derived from alignment at M-pyrifera_M_contig13141:2458..3853+ (Macrocystis pyrifera P11B4 male)
ATGGTGGCCAGCGGGCCGGGCGTTTTTGAGCTCCAGATGGCTTTCGTAGA
CGAGGACGCTGACCACACCATGGTGCTGCCCGTGGCCATGCGCGTCAAGC
AGGTGATTTCATTTCGTTCGTCGCTTTCACTGCAAAAAGTTCGAGGCAGC
GTGTGGCCGCCGACTTGACGTCTCGTAGGAGTAGTGTGTATGAATAGTCG
GTGCGTGTTTACCGTGTTTTGATAGCGGGAAGCGACTGGGCATGTGTGGA
AATACTGTGTGGAACTGATTGGTCGTGGATGAACCTGTGTCTGACCTCAC
GTTGGCTTCGAAAAGGACCGCCTCGTGCCTCCCTCGTTCCTGCAGTAAAA
ATCTCCCAAGGTCTTTGGTAATTGTTTGAGCTTTTGTGTGTTTTTTAGGG
CTGAGGTTTGGTGGGCACGTGGGTGGGGTTGTCCGGGCTCTCGATGCCGG
GGTCGCATGGTTGAACAGAGCGGGGTGCTCTCATCAATGAGAGGAAACCT
AACTATTACGGGGGACCATAGTTAACAGGACCTATGTCACACACAAAAAC
CTATATATTTACCTATTTTTTATACCAAAATTTGGTCCTATTTACTATGC
CCCCCCGTAATAGTATACGAGGCCGTGTGTCTAGCAACATTTTCATGCAC
AAGGTTGTACTTGCAGTATTAGTCAATACTGTTAATGGGAATCTCGGCAA
TACTATTGTTTTCACTTTTTTTTTTTTTTTTTTCGGGGGGGGGCATCATC
GCTAATTACCTTTCTTAGTTCCTTTTACAGGAGTAATCACAGTAGTAGGC
CCGGAGACGATCTGATCAACCTTATTGCATGGTTCATTGCACGTAGAGCA
GTTAAGTAGTCGACTGTTTTTTCAGGCAGAATACATGATAATAATTTCTT
GAATGTTCACTATTTCGACATCAGGCGACGATCTGATCAAGCTCTTTTAC
TAGACGCAAAATTTTACGCACAGCATTTAACTAGTCGGTTGATTTTCAGG
TAGTTTCCGACGCTGACTATTCCTGCTGCTGCTGCTGCTGCTGCTTTCGC
TGTCGTTCTTGCAGCTACTGTACTGAAGCTGCTCTTCTCCAACCCTCATG
CCCTTCCCTCCGGCGCCGCTGCTATCGCACCCGTTCCTCCCGTCCTCGCC
TCGCAGCAGGAGAAGAGCTGGTCGGCGCAAGCTCGTGCCTTCGCTGCGGT
CCGGCGTGATGCTGTCCCCGCGTCGATCGGGACGGCGTCTCGTCCCGTCC
AGCTACCGGTGGTGCTTAGCCCAGGAATGCATTTCTCGTCGATCCCGGAA
ACCATGCGGCACCACAGGGAGAGCCCACCTTTTCCAAGCTCCGCTCCGCC
TTATAGGCACCCCCTCCAGGAGATGCCCTTGCCGCGGTCAACCTAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13141:2458..3853+

>mRNA_M-pyrifera_M_contig13141.5860.1 ID=mRNA_M-pyrifera_M_contig13141.5860.1|Name=mRNA_M-pyrifera_M_contig13141.5860.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=678bp|location=Sequence derived from alignment at M-pyrifera_M_contig13141:2458..3853+ (Macrocystis pyrifera P11B4 male)
ATGGTGGCCAGCGGGCCGGGCGTTTTTGAGCTCCAGATGGCTTTCGTAGA
CGAGGACGCTGACCACACCATGGTGCTGCCCGTGGCCATGCGCGTCAAGC
AGATGGTGGCCAGCGGGCCGGGCGTTTTTGAGCTCCAGATGGCTTTCGTA
GACGAGGACGCTGACCACACCATGGTGCTGCCCGTGGCCATGCGCGTCAA
GCAGGAGAAGAGCTGGTCGGCGCAAGCTCGTGCCTTCGCTGCGGTCCGGC
GTGATGCTGTCCCCGCGTCGATCGGGACGGCGTCTCGTCCCGTCCAGCTA
CCGGTGGTGCTTAGCCCAGGAATGCATTTCTCGTCGATCCCGGAAACCAT
GCGGCACCACAGGGAGAGCCCACCTTTTCCAAGCTCCGCTCCGCCTTATA
GGCACCCCCTCCAGGAGATGCCCTTGCCGCGGTCAACCTACGAGAAGAGC
TGGTCGGCGCAAGCTCGTGCCTTCGCTGCGGTCCGGCGTGATGCTGTCCC
CGCGTCGATCGGGACGGCGTCTCGTCCCGTCCAGCTACCGGTGGTGCTTA
GCCCAGGAATGCATTTCTCGTCGATCCCGGAAACCATGCGGCACCACAGG
GAGAGCCCACCTTTTCCAAGCTCCGCTCCGCCTTATAGGCACCCCCTCCA
GGAGATGCCCTTGCCGCGGTCAACCTAC
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