mRNA_M-pyrifera_M_contig1312.5853.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig1312.5853.1 vs. uniprot
Match: D7FXF5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXF5_ECTSI) HSP 1 Score: 221 bits (563), Expect = 5.860e-55 Identity = 263/753 (34.93%), Postives = 323/753 (42.90%), Query Frame = 1
Query: 1195 PSLTDRPARWAGKGRGSVVRSPLRPPGAAIVSRGIASSSSSKDHNHTTGARHAASSSKAPPGSRLQARADARGAQEGEARTIKVG---VAFSPNPRGPLVVAVVGGFLELTSVFQATANSS---PRPRGAWGKDSHPGGH-RGNHYARLRSRQ-PGFSGG-----------TPEASFDPTQMGPAAATRGGVEAEEVEEVGSDEDDDGFMRDGADVAYWSTRNGTSRRGSEAREQDGGEDGTDDGVCEYDDRALGEGDRALGREVDGTDGIASKGGAGGQGG-ELEAGRGNRMGLSNGPVVSPGHGATEEARLDANGLRGEGDCARLVDHDGVGAMSRDADKVDGSSRSE----NSADARQQRRAAQPSSSGVSPVSQIQGGEGLGAASAPETPRNERKGQQXXXXXXXXXXXXXXXXXXXXXXXXXXRTPVRPPRAA-STSAFGRQTPHAPSAPAAAALSLARHGQWRPSFGSG-GEGKVGRSP--GNMQAPWAAFSTPLRE---------GGPGWVPPSGCSATGSASVRRKRGGGAGNGPLGRLLQQVRARFDGDEARLLSGEFPFRNAPTAKANTDADSSKHPHLGGAG-------GVGRRDHGDPRTRCNVALDVSLM--PDVPREGTAG-DGASSGGGGKGDLGRGGGG----LVRFLCFVHRVSDXXXXXXXXXXXR-----------AADARVLVTTLERLRPLEGVCVDALFKEDTCRAVDLCPGSQLRIYDPCCVLNDASAEG 3267
PSL DRPARWA KG GS V SPLR PGA G A +S S + N T+ +A S K PG + +R G RT + G A S + G ELTSVFQAT SS PRPRG+ G PGG RG+ + +R+ Q G S G TP SFDPT++ GG EE++ GS+ +DGGE C+ + +GDR AS+ G GG+G E + G + DA G++ E + D +G + + + + E + A AR+ +R ++ E A+A ETPR ++ RTPVRPPR + S FGR P A SA AA+ + G+WRPSFGS G G+SP G M AP AAFSTP R+ NGPLGRLLQQVRAR DGDEARLLSGEFPFR +A T + HL G G RRD GDPRTRC VALD ++M PR + G +G GGG +LG+ GGG LVRF CFVH V D AA + T RL LEGV VD +FK+DT RAVD+ PGSQLRIYDPCCV DA G
Sbjct: 547 PSLRDRPARWAAKGGGSSVWSPLRAPGAPRGGTGNAGNSYS-NKNSTSSCGNAVSG-KNSPGRSVSSRFSPSRRGAGLPRTGRGGGDAAASSRSRGGEDGEGEEAPTFELTSVFQATPASSSVSPRPRGSGGHT--PGGRWRGSQHPVVRAGQRAGCSSGXXXXXXXXXXGTPP-SFDPTRLAARPRPVGGETEEELQXX----------------XXXXXXXXXXXXGSDDYGEDGGEGFLSSNACQ-----VADGDRG-----------ASQEGRGGEGWREADGG------------AXXXXXXXXRSGEDAPGVKKEA----VPDSRRLGTLPGETPGAEAGTAMEALALSPAAARRPQRVNDTAA------------EATATAAAVETPRGAKRRHHEQQAERQGGRQSEPIKDRSSPPP---RTPVRPPRTMFAPSTFGRSGPTASSAAAASTSASTTGGKWRPSFGSASGARGGGQSPAAGAMHAPRAAFSTPARDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGPLGRLLQQVRARCDGDEARLLSGEFPFRQPSSASKATTSXXXXXGHLDDVGVGXXXXGGKSRRDPGDPRTRCRVALDATVMLPAATPRGPSVGFEGGLWGGGEGNELGQAGGGGVTGLVRFSCFVHHVVDVSLSLGGSRVSPGSRRVTSAVGYAAGPSGVATDFGRLHRLEGVRVDGIFKQDTRRAVDVGPGSQLRIYDPCCVWYDAEGVG 1231
BLAST of mRNA_M-pyrifera_M_contig1312.5853.1 vs. uniprot
Match: A0A6H5LC46_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC46_9PHAE) HSP 1 Score: 208 bits (529), Expect = 7.450e-53 Identity = 235/653 (35.99%), Postives = 293/653 (44.87%), Query Frame = 1
Query: 1615 RLRSRQPGFSGGTPEA-----SFDPTQMG----PAAATRGGV-EAEEVEEVGSDE----DDDGFMRDGA----DVAYWSTRNGTSRRGSEAREQDGGEDGTDDGVCEYDDRALGE---GDRALGR----------EVDGTDGIASKGGAGGQGGELEAGRGNRMGLSNGPVVSPGHGATEEARLDANGLRGEGDCARLVDHDGVGAMSRDADKVDGSSRSE----NSADARQQRRAAQPSSSGVSPVSQIQGGEGLGAASAPETPRNERKGQQXXXXXXXXXXXXXXXXXXXXXXXXXXRTPVRPPRAA-STSAFGRQTPHAPSAPAAAALSLARH---GQWRPSFGSGGEGKVGR---SPGNMQAPWAAFSTPLREGGPGWVPPSGCSATGSASVRRKRGGGAG-------NGPLGRLLQQVRARFDGDEARLLSGEFPFRNAPTAKANTDADSSKHPHLGG-------AGGVGRRDHGDPRTRCNVALDVSLM--PDVPREGTAGDGASSGGGGKGD----LGRGGG-GLVRFLCFVHRVSDXXXXXXXXXXX--------RAADAR---VLVTTLERLRPLEGVCVDALFKEDTCRAVDLCPGSQLRIYDPCCVLNDASAEGR-----PLLVCTQLCEPFPASLPPLPSP 3336
R R R SGG A SFDPT++ P T + E EEVE+VGSD+ D +GF+ A D + ++R G R G RE DGG G GV +Y+D+ LGE GD A R + G AG +G E R + S + G G + E D G+ D RL G +S + + + +E + A AR+ +R ++ E A+A ETPR KG++ RTPVRPPR + S+FGR P + G+WRPSFGS G + G + G AP AAFSTP R+ NGPLGRLLQQVRAR DGDEARLLSGEFPFR P++ + + + + HL G +G RRD+GDPRTRC+VALD ++M PR + G GGG+G+ GRGG GLV F CFVH V D A DA + T L LEGV VD LFK+DT RAVD+ PGSQLRIYDP CV DA G LLVCTQLCEP+P+ LP LPSP
Sbjct: 3 RARQRAGCSSGGAAAAAGTPPSFDPTRLAARPRPVGETAEELQEVEEVEDVGSDDHGEDDGEGFLNSNACEVADGDWGASREG--RGGDGWREADGGAGG---GVVDYEDQLLGEEGGGDAAATRLDVRLQXXXXXXXXXXXLRPSGAAGIEGENPE--RARAVAPSGRAMDPTGSGRSAE---DEPGVEAVPDSHRL------GTLSDETPGAEAGTATEALAMSPAAARRPQRVNDTAA------------EAAATAAAVETPRGA-KGRRHEQQAERQGGRHREPNRDRSSPPP--RTPVRPPRTMFAPSSFGRSAPTSXXXXXXXXXXXXXXXXGGKWRPSFGSAGGARGGGQSLAAGATHAPRAAFSTPARDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGPLGRLLQQVRARCDGDEARLLSGEFPFRQ-PSSASKSTTGGNNNSHLDGVGVXXXXSGAKSRRDYGDPRTRCSVALDATVMLPAATPRGSSVGFEGGLWGGGEGNELGQAGRGGASGLVWFSCFVHHVVDVSLGLGGNRVRPGSRCATSAAGDAAGWSSVATDFGCLHRLEGVRVDGLFKQDTRRAVDVGPGSQLRIYDPSCVWYDAEVGGEGGRAEALLVCTQLCEPYPSCLPALPSP 623 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1312.5853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig1312.5853.1 >prot_M-pyrifera_M_contig1312.5853.1 ID=prot_M-pyrifera_M_contig1312.5853.1|Name=mRNA_M-pyrifera_M_contig1312.5853.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=1083bp MKVPNMRHPRAMRPSTDNTFPTGIHHSADLLSSPRASTDTDLADTPTSSSback to top mRNA from alignment at M-pyrifera_M_contig1312:780..10438+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig1312.5853.1 ID=mRNA_M-pyrifera_M_contig1312.5853.1|Name=mRNA_M-pyrifera_M_contig1312.5853.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=9659bp|location=Sequence derived from alignment at M-pyrifera_M_contig1312:780..10438+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig1312:780..10438+ >mRNA_M-pyrifera_M_contig1312.5853.1 ID=mRNA_M-pyrifera_M_contig1312.5853.1|Name=mRNA_M-pyrifera_M_contig1312.5853.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=6498bp|location=Sequence derived from alignment at M-pyrifera_M_contig1312:780..10438+ (Macrocystis pyrifera P11B4 male)back to top |