mRNA_M-pyrifera_M_contig13096.5846.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13096.5846.1
Unique NamemRNA_M-pyrifera_M_contig13096.5846.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13096.5846.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13096contigM-pyrifera_M_contig13096:4748..5146 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size383
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13096.5846.1prot_M-pyrifera_M_contig13096.5846.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13096 4768..5104 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815807.6383545-UTR-M-pyrifera_M_contig13096:4747..47671622815807.6383545-UTR-M-pyrifera_M_contig13096:4747..4767Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13096 4748..4767 +
1692277579.902908-UTR-M-pyrifera_M_contig13096:4747..47671692277579.902908-UTR-M-pyrifera_M_contig13096:4747..4767Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13096 4748..4767 +
1622815807.6773965-UTR-M-pyrifera_M_contig13096:5104..51461622815807.6773965-UTR-M-pyrifera_M_contig13096:5104..5146Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13096 5105..5146 +
1692277579.9331417-UTR-M-pyrifera_M_contig13096:5104..51461692277579.9331417-UTR-M-pyrifera_M_contig13096:5104..5146Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13096 5105..5146 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815807.651672-CDS-M-pyrifera_M_contig13096:4767..48151622815807.651672-CDS-M-pyrifera_M_contig13096:4767..4815Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13096 4768..4815 +
1692277579.912402-CDS-M-pyrifera_M_contig13096:4767..48151692277579.912402-CDS-M-pyrifera_M_contig13096:4767..4815Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13096 4768..4815 +
1622815807.663927-CDS-M-pyrifera_M_contig13096:4831..51041622815807.663927-CDS-M-pyrifera_M_contig13096:4831..5104Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13096 4832..5104 +
1692277579.924672-CDS-M-pyrifera_M_contig13096:4831..51041692277579.924672-CDS-M-pyrifera_M_contig13096:4831..5104Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13096 4832..5104 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13096.5846.1

>prot_M-pyrifera_M_contig13096.5846.1 ID=prot_M-pyrifera_M_contig13096.5846.1|Name=mRNA_M-pyrifera_M_contig13096.5846.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
MGSKRETGTGGMKMNIRPMALQHSRNVLPPSQLRCPINRRWVSPRQNRAW
GNVPMLRARGACHIGNTGLKQYVEKQKFVNHQQSTYAQHRFWLHIPRDKK
ERELTL*
back to top

mRNA from alignment at M-pyrifera_M_contig13096:4748..5146+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13096.5846.1 ID=mRNA_M-pyrifera_M_contig13096.5846.1|Name=mRNA_M-pyrifera_M_contig13096.5846.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=399bp|location=Sequence derived from alignment at M-pyrifera_M_contig13096:4748..5146+ (Macrocystis pyrifera P11B4 male)
TTTCCTCCAGTGTCTCGTCGATGGGGTCCAAGAGAGAAACCGGTACGGGA
GGCATGAAGATGAACATTCGCACCAACGGGCCCCCGCCCAATGGCGCTTC
AACACAGCAGAAACGTATTACCACCTTCTCAACTACGATGCCCGATCAAC
CGGCGGTGGGTATCACCCAGACAAAATCGGGCATGGGGAAACGTACCGAT
GCTGCGAGCGAGAGGTGCTTGCCACATCGGCAATACGGGGCTCAAACAAT
ATGTTGAAAAACAAAAGTTCGTAAACCATCAACAAAGCACATACGCGCAA
CACAGATTTTGGCTACATATCCCTCGTGACAAGAAAGAACGGGAGTTAAC
GCTGTAGAGGTTTAACCTTCCTTACCTACATGCACGCAGAGGGGGTGGG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig13096:4748..5146+

>mRNA_M-pyrifera_M_contig13096.5846.1 ID=mRNA_M-pyrifera_M_contig13096.5846.1|Name=mRNA_M-pyrifera_M_contig13096.5846.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig13096:4748..5146+ (Macrocystis pyrifera P11B4 male)
ATGGGGTCCAAGAGAGAAACCGGTACGGGAGGCATGAAGATGAACATTAT
GGGGTCCAAGAGAGAAACCGGTACGGGAGGCATGAAGATGAACATTCGCC
CAATGGCGCTTCAACACAGCAGAAACGTATTACCACCTTCTCAACTACGA
TGCCCGATCAACCGGCGGTGGGTATCACCCAGACAAAATCGGGCATGGGG
AAACGTACCGATGCTGCGAGCGAGAGGTGCTTGCCACATCGGCAATACGG
GGCTCAAACAATATGTTGAAAAACAAAAGTTCGTAAACCATCAACAAAGC
ACATACGCGCAACACAGATTTTGGCTACATATCCCTCGTGACAAGAAAGA
ACGGGAGTTAACGCTGTAGCGCCCAATGGCGCTTCAACACAGCAGAAACG
TATTACCACCTTCTCAACTACGATGCCCGATCAACCGGCGGTGGGTATCA
CCCAGACAAAATCGGGCATGGGGAAACGTACCGATGCTGCGAGCGAGAGG
TGCTTGCCACATCGGCAATACGGGGCTCAAACAATATGTTGAAAAACAAA
AGTTCGTAAACCATCAACAAAGCACATACGCGCAACACAGATTTTGGCTA
CATATCCCTCGTGACAAGAAAGAACGGGAGTTAACGCTGTAG
back to top