mRNA_M-pyrifera_M_contig13086.5844.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig13086.5844.1 vs. uniprot
Match: D8LFM1_ECTSI (Rab3 GTPase-activating protein catalytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFM1_ECTSI) HSP 1 Score: 438 bits (1127), Expect = 1.070e-132 Identity = 319/702 (45.44%), Postives = 365/702 (51.99%), Query Frame = 1
Query: 1 QPPPECLYLDGLTDLFLSKIRDAHCLPGRAFAPRVYIAVQQSWEWNKPETETP-IPPPGLPWD------------------RVHGTKERSGSTAKAEKN-DGDVRGSGSAASGELRTTVTAPSVTETSVMATVDRVNCPGGKRGRAVRRLLGAAEGGKER---ARLWGPDEDPLLSICLRVRWTDLREGLVEESQHYTTLNPLPSGGGA-AFGSDGGDSGDSSSAGQWFVTPRWKVNGTGPNGTKRRGAEGCLGDACCRLLAALVLTTTMHPGTLIADLGADPMSDSPMAVAKDYGKAASAMLSADTRASVEELCSKDHPPSIGHDEIDAILRHLLQSAEEEDXXXXXXXXXXXPNLSDLPAALSGGAAGTAAGHQNDQGGASAGSSA---------ADGLDEQGQTLKWTQVYPREPGPDDSTT---VEEGAGRSSEAGILPVPRSPFDG----------ASKAWHPEARSTSLPKREEEEAGERDESLWACAGRGGAPIGRLVSLLSLSVANCDDLGSMSLLWMSFVRDVRLLWEDGAAIPRMVTMPEVDGISMFDRRVGCTGQNLSVAAQLRGREARDCAPSRGGLRSSQGMQQGRGFGAGRL----------LPDTRMCLIWQKLQMLNCCRPEGGKAAMASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTLFFDTREYCQTSDYETCGGG 1938
+P ECL+LDGLTDLFLSKIRDAHCLPGRAFAP V VQQSWEW KPE E +P P LPW+ R G T+ E GD +G P+ DR G R AVR+LL A GG+E+ +WGPDEDPL+SI +RVRWTDLREGLVEESQHYTTL PLP A A G+DGG SG + G WFV+PR G LGDAC RLLAALVLTT MHPGTL+ADLGA + D A+A+DYGKAASA LS +TR +VEE+C + PSI HD+ID ILR+LL S EE + +PAA G G A N + A D + T KW QVYPR G D ++ ++ G G + A VP P G A + R++S G R SLWA A RGGAPIGRL+SLLSL VA+CDDLGSMSLLWMSFVRDVRLLWEDGA I RM + VDG SMFDR CTGQ+ SVA+QLRG D GG S G G G G L PDTR CLIWQKLQMLNCCR EGG + + FFDTREY QTS+ E GG
Sbjct: 73 KPSRECLFLDGLTDLFLSKIRDAHCLPGRAFAPIVSTTVQQSWEWTKPEEEAAQLPAPALPWEGGXXXXXXXXXXXXXXXXXXXXXDGRRGGTSLGEPTVGGDPQG---------------PTTXXXXXXXAGDRGGV--GSREDAVRQLLRAIGGGREQEIGTPVWGPDEDPLVSIFVRVRWTDLREGLVEESQHYTTLEPLPEEARAGAGGADGGYSG-AGVGGHWFVSPR-----------------GRLGDACSRLLAALVLTTAMHPGTLMADLGAGSLEDGRTALAQDYGKAASAKLSDETRKAVEEMCRRSQSPSINHDDIDLILRYLLHSQGEE--------------RAVVPAANQGSGGGPDADGDNKARRVQPPLPSSRWRQVHLGARQQDPRQSTEKWKQVYPRARGVTDDSSKRRLQPGGGAAEPAS---VPNDPSHGDVNRTMEASWAELSASGSGRASSYETMTGGRGGRR--SLWAWAERGGAPIGRLLSLLSLRVASCDDLGSMSLLWMSFVRDVRLLWEDGATIARMSPIAAVDGTSMFDRGASCTGQDRSVASQLRGSSQAD-----GG--SVDVSDDGSG-GDGSLPPWSDRSLVPYPDTRTCLIWQKLQMLNCCRAEGG-----AQMGLQLSSPPPSQDVGDGTADQGEGEKGPGDDEDEEAFFDTREYYQTSEDEGSSGG 707
BLAST of mRNA_M-pyrifera_M_contig13086.5844.1 vs. uniprot
Match: A0A6H5JCY7_9PHAE (Rab3 GTPase-activating protein catalytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCY7_9PHAE) HSP 1 Score: 407 bits (1046), Expect = 5.060e-121 Identity = 300/705 (42.55%), Postives = 349/705 (49.50%), Query Frame = 1
Query: 1 QPPPECLYLDGLTDLFLSKIRDAHCLPGRAFAPRVYIAVQQSWEWNKPETETP-IPPPGLPWD------------------RVHGTKERSGSTAKAEKNDGDVRGSGSAASGELRTTVTAPSVTETSVMATVDRVNCPGGKRGRAVRRLLGAAEGGKERARLWGPDEDPLLSICLRVRWTDLREGLVEESQHYTTLNPLPSGGGAAFGSDGGDSGDSSSAG------QWFVTPRWKVNGTGPNGTKRRGAEGCLGDACCRLLAALVLTTTMHPGTLIADLGADPMSDSPMAVAKDYGKAASAMLSADTRASVEELCSKDHPPSIGHDEIDAILRHLLQSAEEEDXXXXXXXXXXXPNLSDLPAALSGGAAGTAAGHQNDQGGASAGSSAADG-------------------------LDEQGQTLKWTQVYPREPGPDDSTTVEE--GAGRSSEAGILPVPRSPFD--GASKAWHPEARSTSLPKREEEEA--GERD--ESLWACAGRGGAPIGRLVSLLSLSVANCDDLGSMSLLWMSFVRDVRLLWEDGAAIPRMVTMPEVDGISMFDRRVGCTGQNLSVAAQLRGREARDCAPSRGGLRSS--QGMQQGRGFGAGRLLPDTRMCLIWQKLQMLNCCRPEGGKAAMASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTLFFDTREYCQTSDYETCGG 1935
+P ECL+LDGLTDLFLSKIRDAHCLPGRAFAP V VQQSWEW KPE + +P P LPW+ R G T+ G+ G G A D V R + R +G G + R +WGPDEDPL+SI +RVRWTDLREGLVEESQHYTTL PLP A G GG G S AG G LGDAC RLLAALVLTT MHPGTL+ADLGA + D A+A+DYGKAASAMLS +TR +VE++C + PSI HD+ID ILR+LL S EE GA TAA +QG G ADG D + T KW QVYPR G D +++ + G ++E +P +S D G +A E ++ + +E G R+ SLW A RGGAPIGRL+SLLSL VA+CDDLGSMSLLWMSFVRDVRLLWEDGA I RM + VDG SMFD CTGQ+ SVA+QLRG D + G SS G + L PDTR CLIWQKLQMLNCCR EG + FFDTREY QTS+ E G
Sbjct: 73 KPSRECLFLDGLTDLFLSKIRDAHCLPGRAFAPIVSTTVQQSWEWTKPEEDAAQLPAPALPWEGGGXXXXXXXXXFXXXXXXXXXXXXRRGGTSL-----GEFPGGGDPQGPXXXXXXXXXXXXXXXXXAREDAV--------RQLLRAVGGGSGQESRTPVWGPDEDPLVSIFVRVRWTDLREGLVEESQHYTTLEPLPE---EARGGAGGADGSYSGAGVGGHCDNXXXXXXXXXXXXXXXXXXXXXHRGRLGDACSRLLAALVLTTAMHPGTLMADLGAGSLEDGRTALAQDYGKAASAMLSDETRKAVEDMCRRSKSPSINHDDIDLILRYLLHSQGEE------------------------GAVATAA----NQG---CGGLDADGNNKARRVQPSLPSSRWRQVHLGTRQQDRRQSTEKWKQVYPRARGVTDDSSLRQLQPEGGAAERTSVPNDQSHRDVHGTMEASWAELSTSGSGRASSDETMMGGREGRRSLWVWAERGGAPIGRLLSLLSLRVASCDDLGSMSLLWMSFVRDVRLLWEDGATIARMNPITAVDGTSMFDWSASCTGQDRSVASQLRGSRQADGGGADGSDDSSGRDGSLPPWSDHSLVLYPDTRTCLIWQKLQMLNCCRAEGAPQV------DLQPSPPPSQDVGDGAADQGGGEKGPGDDEDEEAFFDTREYYQTSEDEGSSG 724 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13086.5844.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig13086.5844.1 >prot_M-pyrifera_M_contig13086.5844.1 ID=prot_M-pyrifera_M_contig13086.5844.1|Name=mRNA_M-pyrifera_M_contig13086.5844.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=712bp QPPPECLYLDGLTDLFLSKIRDAHCLPGRAFAPRVYIAVQQSWEWNKPETback to top mRNA from alignment at M-pyrifera_M_contig13086:1991..7716- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig13086.5844.1 ID=mRNA_M-pyrifera_M_contig13086.5844.1|Name=mRNA_M-pyrifera_M_contig13086.5844.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=5726bp|location=Sequence derived from alignment at M-pyrifera_M_contig13086:1991..7716- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig13086:1991..7716- >mRNA_M-pyrifera_M_contig13086.5844.1 ID=mRNA_M-pyrifera_M_contig13086.5844.1|Name=mRNA_M-pyrifera_M_contig13086.5844.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=4272bp|location=Sequence derived from alignment at M-pyrifera_M_contig13086:1991..7716- (Macrocystis pyrifera P11B4 male)back to top |