mRNA_M-pyrifera_M_contig1307.5837.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1307.5837.1
Unique NamemRNA_M-pyrifera_M_contig1307.5837.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig1307.5837.1 vs. uniprot
Match: D7FV59_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV59_ECTSI)

HSP 1 Score: 506 bits (1304), Expect = 1.110e-173
Identity = 319/508 (62.80%), Postives = 359/508 (70.67%), Query Frame = 1 
Query:    4 MRALIAFLGARLERLASLRVHLPALLRIADDDKDEWVQVVSGLVRRKLLPSETDALGSGGSGDNVAAATTQDPAIYSSAVLSKTVTEVLERAQRIMSERRGNGEPVASGGGSGGG---IRHVMEAPYFGPLEERYVSRKQQPPRKEFANAHFRAKYDFLNEFTEDLASHVGNASNASVSTTGTG-SAATAAQGXXXXXXXXXXXXXXXVPQSASAGPNLAQARRISLAAT-DPAVGSDGLRRTSKPLALSRNHAGLQPGAAGAQFGSRKSSSGAGSARGMRAGSXXXXXXKAGLMMINVDELQAIHADKLTAREKAKGKPGRKKAKVEAPDERRAAG-------DGQPXXXXXXXXXXXSNGTGRTQDGASANGKGKAAKLEEPAKPSAPPPSGPMPVPQQGEIDAMAAMIVLGVAGGGDGDAKTSYLPESLTQLLENANSLRPDGKAKLESFFQKRTPEGSPQERVKYHEEVSEGADGELARVTSYIRLDYETWVWDRVHKKKRVRS 1491
            M+ALIAFLGAR E LASL   LP+LL +AD DKDEWVQVVSGLVR+KLLP + D   S   GD   A T+Q     S  VL KTV EVLERA++ MSER GNG+    GG + GG    R + EAPYFGPLEERYVSRKQQP ++EFANAHF  KYDF+ EF+EDLAS+VG  SN S S TG G S A AA                  P    A PNLAQARR+SLAA  DP+ GSDGLRRTSKPLALSRN+ GLQ        GS ++SSG G ARG R G       KAGLMMINVDELQAIHA+K +AREKAKGKPGRKKAK+E   E+  AG                       N  G+  +GAS  G+GK AK + PAKPSA    GPMPVPQQGEI+A+AAM+VLGVAGGG+ DA+TSYLPE+LT+LLENANSLRP+GKAKLESFFQK+ PEGS QERVKYHEEVS GADGE+ RVTSYIRLDYETWVWDRVHKKKRV+S
Sbjct:    1 MKALIAFLGARKEHLASLNHVLPSLLGMADSDKDEWVQVVSGLVRQKLLPRDEDD--STSVGDE--AKTSQ-----SDFVLRKTVREVLERAKQNMSERAGNGKQRVVGGSTIGGNRDTRRMREAPYFGPLEERYVSRKQQPRKQEFANAHFSVKYDFVGEFSEDLASNVGGTSNTSSSPTGGGASVAAAALASRVGQGGLLKTPGSFAPAPTPAAPNLAQARRVSLAAVVDPSAGSDGLRRTSKPLALSRNYVGLQ-------HGSGRTSSGVGGARGTRGGGGASPG-KAGLMMINVDELQAIHAEKQSAREKAKGKPGRKKAKLEGGGEQSTAGMEPGTGASATGTQQVVANATDVGNTDGQLPEGAS--GEGKKAKPKAPAKPSATA-DGPMPVPQQGEIEAVAAMMVLGVAGGGE-DAETSYLPEALTKLLENANSLRPEGKAKLESFFQKKMPEGSQQERVKYHEEVSPGADGEMMRVTSYIRLDYETWVWDRVHKKKRVKS 487
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1307.5837.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FV59_ECTSI1.110e-17362.80Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1307contigM-pyrifera_M_contig1307:4585..6078 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_007450.1
Exons1
Model size1494
Cds size1491
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815806.8627229-UTR-M-pyrifera_M_contig1307:4584..45871622815806.8627229-UTR-M-pyrifera_M_contig1307:4584..4587Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1307 4585..4587 +
1692277579.4244444-UTR-M-pyrifera_M_contig1307:4584..45871692277579.4244444-UTR-M-pyrifera_M_contig1307:4584..4587Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1307 4585..4587 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815806.8730578-CDS-M-pyrifera_M_contig1307:4587..60781622815806.8730578-CDS-M-pyrifera_M_contig1307:4587..6078Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1307 4588..6078 +
1692277579.435005-CDS-M-pyrifera_M_contig1307:4587..60781692277579.435005-CDS-M-pyrifera_M_contig1307:4587..6078Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1307 4588..6078 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1307.5837.1prot_M-pyrifera_M_contig1307.5837.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1307 4588..6078 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1307.5837.1

>prot_M-pyrifera_M_contig1307.5837.1 ID=prot_M-pyrifera_M_contig1307.5837.1|Name=mRNA_M-pyrifera_M_contig1307.5837.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=497bp
MRALIAFLGARLERLASLRVHLPALLRIADDDKDEWVQVVSGLVRRKLLP
SETDALGSGGSGDNVAAATTQDPAIYSSAVLSKTVTEVLERAQRIMSERR
GNGEPVASGGGSGGGIRHVMEAPYFGPLEERYVSRKQQPPRKEFANAHFR
AKYDFLNEFTEDLASHVGNASNASVSTTGTGSAATAAQGARAGQGGSSKP
SGSSVPQSASAGPNLAQARRISLAATDPAVGSDGLRRTSKPLALSRNHAG
LQPGAAGAQFGSRKSSSGAGSARGMRAGSGGGGGGKAGLMMINVDELQAI
HADKLTAREKAKGKPGRKKAKVEAPDERRAAGDGQPPPPPPSVSGGGSNG
TGRTQDGASANGKGKAAKLEEPAKPSAPPPSGPMPVPQQGEIDAMAAMIV
LGVAGGGDGDAKTSYLPESLTQLLENANSLRPDGKAKLESFFQKRTPEGS
PQERVKYHEEVSEGADGELARVTSYIRLDYETWVWDRVHKKKRVRS*
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mRNA from alignment at M-pyrifera_M_contig1307:4585..6078+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1307.5837.1 ID=mRNA_M-pyrifera_M_contig1307.5837.1|Name=mRNA_M-pyrifera_M_contig1307.5837.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1494bp|location=Sequence derived from alignment at M-pyrifera_M_contig1307:4585..6078+ (Macrocystis pyrifera P11B4 male)
CAGATGAGAGCCCTCATTGCTTTCCTGGGGGCACGACTGGAGCGTCTCGC
CTCGCTTCGAGTACACCTACCGGCGCTTTTAAGAATCGCCGATGATGACA
AAGACGAGTGGGTCCAGGTGGTGTCAGGCCTCGTTCGTCGCAAACTCCTG
CCAAGCGAAACGGACGCTTTAGGTTCAGGCGGCTCTGGAGACAACGTAGC
AGCAGCCACTACCCAAGATCCCGCGATCTACTCCTCCGCTGTTTTGAGCA
AGACGGTGACGGAAGTGCTCGAGCGGGCACAACGAATCATGTCGGAGCGG
CGAGGCAACGGCGAGCCTGTCGCGAGCGGTGGCGGCAGCGGGGGTGGAAT
ACGACATGTTATGGAGGCGCCATATTTTGGGCCGTTGGAGGAGCGATACG
TGAGCCGCAAGCAACAGCCGCCTCGAAAGGAGTTTGCCAACGCACACTTC
CGTGCCAAGTACGACTTTCTGAACGAATTCACCGAGGACCTAGCTTCACA
CGTCGGCAATGCCTCGAATGCATCGGTATCCACCACAGGAACGGGCTCTG
CAGCCACCGCTGCTCAAGGTGCCAGGGCGGGCCAAGGCGGATCGTCCAAG
CCTTCGGGATCCTCAGTACCCCAGTCCGCTTCGGCCGGACCGAACCTCGC
GCAAGCGCGGAGGATCTCTCTAGCAGCGACCGACCCAGCCGTCGGCTCAG
ATGGCCTCCGCAGAACTAGCAAACCCTTAGCTCTGTCAAGGAATCACGCT
GGGCTCCAACCGGGAGCAGCTGGGGCGCAGTTCGGGAGTCGCAAGAGCAG
CTCAGGGGCTGGGAGCGCGCGCGGCATGCGGGCAGGAAGCGGCGGCGGTG
GAGGCGGGAAGGCCGGACTGATGATGATCAATGTAGACGAGTTGCAGGCC
ATACACGCCGATAAGCTGACTGCCAGAGAGAAGGCTAAGGGAAAACCGGG
CAGGAAGAAGGCCAAGGTCGAAGCGCCCGATGAGCGGAGGGCGGCCGGTG
ACGGGCAGCCGCCTCCTCCTCCTCCCTCCGTCTCGGGCGGTGGTAGTAAT
GGGACCGGTCGGACACAGGATGGAGCATCTGCGAATGGTAAGGGAAAGGC
TGCTAAGTTGGAGGAGCCAGCGAAACCTTCGGCGCCGCCGCCTAGCGGGC
CGATGCCTGTCCCACAGCAGGGAGAGATCGATGCCATGGCGGCGATGATC
GTACTCGGTGTTGCCGGGGGGGGAGATGGAGACGCGAAGACGTCATACCT
GCCCGAATCTCTGACGCAGCTCTTGGAAAACGCCAATTCGCTTCGGCCCG
ATGGTAAGGCTAAGCTCGAGAGTTTCTTCCAGAAGAGAACGCCCGAAGGG
TCGCCGCAAGAGAGGGTGAAGTACCACGAGGAGGTTAGCGAGGGTGCAGA
TGGAGAGTTGGCGCGGGTGACGAGCTACATTCGCCTCGATTATGAGACGT
GGGTATGGGATAGGGTACACAAGAAGAAGCGGGTTAGATCGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1307:4585..6078+

>mRNA_M-pyrifera_M_contig1307.5837.1 ID=mRNA_M-pyrifera_M_contig1307.5837.1|Name=mRNA_M-pyrifera_M_contig1307.5837.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2982bp|location=Sequence derived from alignment at M-pyrifera_M_contig1307:4585..6078+ (Macrocystis pyrifera P11B4 male)
ATGAGAGCCCTCATTGCTTTCCTGGGGGCACGACTGGAGCGTCTCGCCTC
GCTTCGAGTACACCTACCGGCGCTTTTAAGAATCGCCGATGATGACAAAG
ACGAGTGGGTCCAGGTGGTGTCAGGCCTCGTTCGTCGCAAACTCCTGCCA
AGCGAAACGGACGCTTTAGGTTCAGGCGGCTCTGGAGACAACGTAGCAGC
AGCCACTACCCAAGATCCCGCGATCTACTCCTCCGCTGTTTTGAGCAAGA
CGGTGACGGAAGTGCTCGAGCGGGCACAACGAATCATGTCGGAGCGGCGA
GGCAACGGCGAGCCTGTCGCGAGCGGTGGCGGCAGCGGGGGTGGAATACG
ACATGTTATGGAGGCGCCATATTTTGGGCCGTTGGAGGAGCGATACGTGA
GCCGCAAGCAACAGCCGCCTCGAAAGGAGTTTGCCAACGCACACTTCCGT
GCCAAGTACGACTTTCTGAACGAATTCACCGAGGACCTAGCTTCACACGT
CGGCAATGCCTCGAATGCATCGGTATCCACCACAGGAACGGGCTCTGCAG
CCACCGCTGCTCAAGGTGCCAGGGCGGGCCAAGGCGGATCGTCCAAGCCT
TCGGGATCCTCAGTACCCCAGTCCGCTTCGGCCGGACCGAACCTCGCGCA
AGCGCGGAGGATCTCTCTAGCAGCGACCGACCCAGCCGTCGGCTCAGATG
GCCTCCGCAGAACTAGCAAACCCTTAGCTCTGTCAAGGAATCACGCTGGG
CTCCAACCGGGAGCAGCTGGGGCGCAGTTCGGGAGTCGCAAGAGCAGCTC
AGGGGCTGGGAGCGCGCGCGGCATGCGGGCAGGAAGCGGCGGCGGTGGAG
GCGGGAAGGCCGGACTGATGATGATCAATGTAGACGAGTTGCAGGCCATA
CACGCCGATAAGCTGACTGCCAGAGAGAAGGCTAAGGGAAAACCGGGCAG
GAAGAAGGCCAAGGTCGAAGCGCCCGATGAGCGGAGGGCGGCCGGTGACG
GGCAGCCGCCTCCTCCTCCTCCCTCCGTCTCGGGCGGTGGTAGTAATGGG
ACCGGTCGGACACAGGATGGAGCATCTGCGAATGGTAAGGGAAAGGCTGC
TAAGTTGGAGGAGCCAGCGAAACCTTCGGCGCCGCCGCCTAGCGGGCCGA
TGCCTGTCCCACAGCAGGGAGAGATCGATGCCATGGCGGCGATGATCGTA
CTCGGTGTTGCCGGGGGGGGAGATGGAGACGCGAAGACGTCATACCTGCC
CGAATCTCTGACGCAGCTCTTGGAAAACGCCAATTCGCTTCGGCCCGATG
GTAAGGCTAAGCTCGAGAGTTTCTTCCAGAAGAGAACGCCCGAAGGGTCG
CCGCAAGAGAGGGTGAAGTACCACGAGGAGGTTAGCGAGGGTGCAGATGG
AGAGTTGGCGCGGGTGACGAGCTACATTCGCCTCGATTATGAGACGTGGG
TATGGGATAGGGTACACAAGAAGAAGCGGGTTAGATCGTGAATGAGAGCC
CTCATTGCTTTCCTGGGGGCACGACTGGAGCGTCTCGCCTCGCTTCGAGT
ACACCTACCGGCGCTTTTAAGAATCGCCGATGATGACAAAGACGAGTGGG
TCCAGGTGGTGTCAGGCCTCGTTCGTCGCAAACTCCTGCCAAGCGAAACG
GACGCTTTAGGTTCAGGCGGCTCTGGAGACAACGTAGCAGCAGCCACTAC
CCAAGATCCCGCGATCTACTCCTCCGCTGTTTTGAGCAAGACGGTGACGG
AAGTGCTCGAGCGGGCACAACGAATCATGTCGGAGCGGCGAGGCAACGGC
GAGCCTGTCGCGAGCGGTGGCGGCAGCGGGGGTGGAATACGACATGTTAT
GGAGGCGCCATATTTTGGGCCGTTGGAGGAGCGATACGTGAGCCGCAAGC
AACAGCCGCCTCGAAAGGAGTTTGCCAACGCACACTTCCGTGCCAAGTAC
GACTTTCTGAACGAATTCACCGAGGACCTAGCTTCACACGTCGGCAATGC
CTCGAATGCATCGGTATCCACCACAGGAACGGGCTCTGCAGCCACCGCTG
CTCAAGGTGCCAGGGCGGGCCAAGGCGGATCGTCCAAGCCTTCGGGATCC
TCAGTACCCCAGTCCGCTTCGGCCGGACCGAACCTCGCGCAAGCGCGGAG
GATCTCTCTAGCAGCGACCGACCCAGCCGTCGGCTCAGATGGCCTCCGCA
GAACTAGCAAACCCTTAGCTCTGTCAAGGAATCACGCTGGGCTCCAACCG
GGAGCAGCTGGGGCGCAGTTCGGGAGTCGCAAGAGCAGCTCAGGGGCTGG
GAGCGCGCGCGGCATGCGGGCAGGAAGCGGCGGCGGTGGAGGCGGGAAGG
CCGGACTGATGATGATCAATGTAGACGAGTTGCAGGCCATACACGCCGAT
AAGCTGACTGCCAGAGAGAAGGCTAAGGGAAAACCGGGCAGGAAGAAGGC
CAAGGTCGAAGCGCCCGATGAGCGGAGGGCGGCCGGTGACGGGCAGCCGC
CTCCTCCTCCTCCCTCCGTCTCGGGCGGTGGTAGTAATGGGACCGGTCGG
ACACAGGATGGAGCATCTGCGAATGGTAAGGGAAAGGCTGCTAAGTTGGA
GGAGCCAGCGAAACCTTCGGCGCCGCCGCCTAGCGGGCCGATGCCTGTCC
CACAGCAGGGAGAGATCGATGCCATGGCGGCGATGATCGTACTCGGTGTT
GCCGGGGGGGGAGATGGAGACGCGAAGACGTCATACCTGCCCGAATCTCT
GACGCAGCTCTTGGAAAACGCCAATTCGCTTCGGCCCGATGGTAAGGCTA
AGCTCGAGAGTTTCTTCCAGAAGAGAACGCCCGAAGGGTCGCCGCAAGAG
AGGGTGAAGTACCACGAGGAGGTTAGCGAGGGTGCAGATGGAGAGTTGGC
GCGGGTGACGAGCTACATTCGCCTCGATTATGAGACGTGGGTATGGGATA
GGGTACACAAGAAGAAGCGGGTTAGATCGTGA
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