mRNA_M-pyrifera_M_contig1303.5824.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1303.5824.1
Unique NamemRNA_M-pyrifera_M_contig1303.5824.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig1303.5824.1 vs. uniprot
Match: A0A6H5K3E8_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3E8_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 2.450e-27
Identity = 53/81 (65.43%), Postives = 64/81 (79.01%), Query Frame = 1 
Query:    1 VALHDDTAVKNRYHTPIGAMAVIDNDYRMRIAGQSYTADTMTDPFVWFLGCVLDSRGGEPPEIVVQVADAAMMGAVRQVFP 243
            VAL+DDTAVKNRY  P+G +AVID++YR RI GQS TADT TD F+W L   L+SRGG+ P+I +Q ADAAM  AVR+VFP
Sbjct:   80 VALYDDTAVKNRYRMPLGVLAVIDSEYRTRIVGQSITADTTTDTFLWMLKSALESRGGKQPDIFIQDADAAMTAAVREVFP 160
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BLAST of mRNA_M-pyrifera_M_contig1303.5824.1 vs. uniprot
Match: A0A6H5K5C5_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5C5_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 3.090e-27
Identity = 53/81 (65.43%), Postives = 64/81 (79.01%), Query Frame = 1 
Query:    1 VALHDDTAVKNRYHTPIGAMAVIDNDYRMRIAGQSYTADTMTDPFVWFLGCVLDSRGGEPPEIVVQVADAAMMGAVRQVFP 243
            VAL+DDTAVKNRY  P+G +AVID++YR RI GQS TADT TD F+W L   L+SRGG+ P+I +Q ADAAM  AVR+VFP
Sbjct:   80 VALYDDTAVKNRYRMPLGVLAVIDSEYRTRIVGQSITADTTTDTFLWMLKSALESRGGKQPDIFIQDADAAMTAAVREVFP 160
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BLAST of mRNA_M-pyrifera_M_contig1303.5824.1 vs. uniprot
Match: A0A6H5LMZ3_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LMZ3_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 7.150e-26
Identity = 52/81 (64.20%), Postives = 63/81 (77.78%), Query Frame = 1 
Query:    1 VALHDDTAVKNRYHTPIGAMAVIDNDYRMRIAGQSYTADTMTDPFVWFLGCVLDSRGGEPPEIVVQVADAAMMGAVRQVFP 243
            VAL+DDTAVKNRY  P+G +AVID++YR RI GQS TADT TD F+W L   L+SRGG+ P+I +Q A AAM  AVR+VFP
Sbjct:  577 VALYDDTAVKNRYRMPLGVLAVIDSEYRTRIVGQSITADTTTDTFLWMLKSALESRGGKQPDIFIQDAVAAMTAAVREVFP 657
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BLAST of mRNA_M-pyrifera_M_contig1303.5824.1 vs. uniprot
Match: D8LU83_ECTSI (SWIM-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU83_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 7.370e-24
Identity = 50/81 (61.73%), Postives = 62/81 (76.54%), Query Frame = 1 
Query:    1 VALHDDTAVKNRYHTPIGAMAVIDNDYRMRIAGQSYTADTMTDPFVWFLGCVLDSRGGEPPEIVVQVADAAMMGAVRQVFP 243
            VAL+DDTAVKNRY  P+G +AV+D++YR RI GQS TADT TD F+W L   L+SRG +P +  +Q ADAAM  AVR+VFP
Sbjct:  200 VALYDDTAVKNRYRMPLGVLAVVDSEYRTRIVGQSITADTTTDTFLWMLKSALESRGKQP-DTFIQDADAAMTAAVREVFP 279
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BLAST of mRNA_M-pyrifera_M_contig1303.5824.1 vs. uniprot
Match: A0A6H5K0P6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0P6_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 9.060e-21
Identity = 40/63 (63.49%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:    1 VALHDDTAVKNRYHTPIGAMAVIDNDYRMRIAGQSYTADTMTDPFVWFLGCVLDSRGGEPPEI 189
            VAL+DDTAVKNRY  P+G +AVID++YR RI GQS TADT TD F+W L   L+SRGG+ P++
Sbjct:   50 VALYDDTAVKNRYRMPLGVLAVIDSEYRTRIVGQSITADTTTDTFLWMLKSALESRGGKQPDL 112
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BLAST of mRNA_M-pyrifera_M_contig1303.5824.1 vs. uniprot
Match: A0A6H5JAS6_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAS6_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 3.030e-20
Identity = 44/77 (57.14%), Postives = 55/77 (71.43%), Query Frame = 1 
Query:   13 DDTAVKNRYHTPIGAMAVIDNDYRMRIAGQSYTADTMTDPFVWFLGCVLDSRGGEPPEIVVQVADAAMMGAVRQVFP 243
            +  A+ NRY  P+G +AVID++YR RI GQS TADT T+ FVW L   L SRGG+ P+I +Q AD AM  AVR+VFP
Sbjct:  243 EQMALWNRYRMPLGVLAVIDSEYRTRIVGQSITADTTTNTFVWMLKSALRSRGGKQPDIFIQDADVAMTAAVREVFP 319
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BLAST of mRNA_M-pyrifera_M_contig1303.5824.1 vs. uniprot
Match: A0A6H5JNB0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNB0_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 3.360e-20
Identity = 44/77 (57.14%), Postives = 55/77 (71.43%), Query Frame = 1 
Query:   13 DDTAVKNRYHTPIGAMAVIDNDYRMRIAGQSYTADTMTDPFVWFLGCVLDSRGGEPPEIVVQVADAAMMGAVRQVFP 243
            +  A+ NRY  P+G +AVID++YR RI GQS TADT T+ FVW L   L SRGG+ P+I +Q AD AM  AVR+VFP
Sbjct:  247 EQMALWNRYRMPLGVLAVIDSEYRTRIVGQSITADTTTNTFVWMLKSALRSRGGKQPDIFIQDADVAMTAAVREVFP 323
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BLAST of mRNA_M-pyrifera_M_contig1303.5824.1 vs. uniprot
Match: A0A6H5JK57_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK57_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 3.690e-20
Identity = 43/77 (55.84%), Postives = 55/77 (71.43%), Query Frame = 1 
Query:   13 DDTAVKNRYHTPIGAMAVIDNDYRMRIAGQSYTADTMTDPFVWFLGCVLDSRGGEPPEIVVQVADAAMMGAVRQVFP 243
            +  A+ NRY  P+G +AVID++YR RI GQS TADT T+ FVW L   L SRGG+ P+I +Q A+ AM  AVR+VFP
Sbjct:  243 EQVALWNRYRMPLGVLAVIDSEYRTRIVGQSITADTTTNTFVWMLKSALRSRGGKQPDIFIQDAEVAMTAAVREVFP 319
[Close]
BLAST of mRNA_M-pyrifera_M_contig1303.5824.1 vs. uniprot
Match: A0A6H5JFD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFD7_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.250e-12
Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    1 VALHDDTAVKNRYHTPIGAMAVIDNDYRMRIAGQSYTADTMTDPFVW 141
            V L+DDTAVKNRY  P+G +AVID++YR RI GQS TADT T+ FVW
Sbjct:   27 VTLYDDTAVKNRYRMPLGVLAVIDSEYRTRIVGQSITADTTTNTFVW 73
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1303.5824.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5K3E8_9PHAE2.450e-2765.43SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K5C5_9PHAE3.090e-2765.43MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5LMZ3_9PHAE7.150e-2664.20SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LU83_ECTSI7.370e-2461.73SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K0P6_9PHAE9.060e-2163.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAS6_9PHAE3.030e-2057.14MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JNB0_9PHAE3.360e-2057.14SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JK57_9PHAE3.690e-2055.84MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JFD7_9PHAE1.250e-1268.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1303contigM-pyrifera_M_contig1303:5155..5397 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.6
Seed ortholog evalue4.4e-20
Seed eggNOG ortholog2880.D8LU83
Preferred nameFHY3
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0007154,GO:0007165,GO:0007602,GO:0007623,GO:0008150,GO:0009314,GO:0009416,GO:0009581,GO:0009582,GO:0009583,GO:0009585,GO:0009605,GO:0009628,GO:0009639,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010017,GO:0010018,GO:0010218,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0023052,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0042752,GO:0042753,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045893,GO:0045935,GO:0048511,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051606,GO:0051716,GO:0060255,GO:0065007,GO:0071214,GO:0071478,GO:0071482,GO:0071489,GO:0071490,GO:0080090,GO:0104004,GO:0140110,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.MULE transposase domain
EggNOG OGs2CMBY@1,2QPXR@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size243
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815805.8183148-CDS-M-pyrifera_M_contig1303:5154..53971622815805.8183148-CDS-M-pyrifera_M_contig1303:5154..5397Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1303 5155..5397 -
1692277578.7805686-CDS-M-pyrifera_M_contig1303:5154..53971692277578.7805686-CDS-M-pyrifera_M_contig1303:5154..5397Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1303 5155..5397 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1303.5824.1prot_M-pyrifera_M_contig1303.5824.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1303 5155..5397 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1303.5824.1

>prot_M-pyrifera_M_contig1303.5824.1 ID=prot_M-pyrifera_M_contig1303.5824.1|Name=mRNA_M-pyrifera_M_contig1303.5824.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=81bp
VALHDDTAVKNRYHTPIGAMAVIDNDYRMRIAGQSYTADTMTDPFVWFLG
CVLDSRGGEPPEIVVQVADAAMMGAVRQVFP
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mRNA from alignment at M-pyrifera_M_contig1303:5155..5397-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1303.5824.1 ID=mRNA_M-pyrifera_M_contig1303.5824.1|Name=mRNA_M-pyrifera_M_contig1303.5824.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=243bp|location=Sequence derived from alignment at M-pyrifera_M_contig1303:5155..5397- (Macrocystis pyrifera P11B4 male)
GTCGCGCTGCACGATGATACGGCGGTGAAAAACCGATATCATACCCCTAT
CGGTGCCATGGCAGTCATCGACAATGACTACCGCATGCGCATTGCTGGCC
AGTCGTATACAGCGGACACGATGACGGACCCTTTCGTCTGGTTTTTGGGA
TGCGTGCTCGATTCCCGCGGGGGTGAGCCGCCGGAAATCGTTGTTCAGGT
TGCGGATGCTGCGATGATGGGGGCAGTCCGACAGGTCTTCCCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1303:5155..5397-

>mRNA_M-pyrifera_M_contig1303.5824.1 ID=mRNA_M-pyrifera_M_contig1303.5824.1|Name=mRNA_M-pyrifera_M_contig1303.5824.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig1303:5155..5397- (Macrocystis pyrifera P11B4 male)
GTCGCGCTGCACGATGATACGGCGGTGAAAAACCGATATCATACCCCTAT
CGGTGCCATGGCAGTCATCGACAATGACTACCGCATGCGCATTGCTGGCC
AGTCGTATACAGCGGACACGATGACGGACCCTTTCGTCTGGTTTTTGGGA
TGCGTGCTCGATTCCCGCGGGGGTGAGCCGCCGGAAATCGTTGTTCAGGT
TGCGGATGCTGCGATGATGGGGGCAGTCCGACAGGTCTTCCCGGTCGCGC
TGCACGATGATACGGCGGTGAAAAACCGATATCATACCCCTATCGGTGCC
ATGGCAGTCATCGACAATGACTACCGCATGCGCATTGCTGGCCAGTCGTA
TACAGCGGACACGATGACGGACCCTTTCGTCTGGTTTTTGGGATGCGTGC
TCGATTCCCGCGGGGGTGAGCCGCCGGAAATCGTTGTTCAGGTTGCGGAT
GCTGCGATGATGGGGGCAGTCCGACAGGTCTTCCCG
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