mRNA_M-pyrifera_M_contig12995.5811.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12995.5811.1
Unique NamemRNA_M-pyrifera_M_contig12995.5811.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12995.5811.1 vs. uniprot
Match: A0A6H5L2D8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2D8_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 1.090e-23
Identity = 62/93 (66.67%), Postives = 66/93 (70.97%), Query Frame = 1 
Query:    1 MTYSSSKASVVAAAAEVGTTVDHMVEIRAANEIDEAVAHAARDAADXXXXXXXXXXXXXXXXXXERATIVSPVPAVSRPSRPGRGRARLTKRA 279
            MTYSSSKASVVAAAAE G TVDHMVEIRAANEIDEAVAHA R + +                  E  TI  PVPAV+RPSRPGRGRARLTKR+
Sbjct:  171 MTYSSSKASVVAAAAEAGVTVDHMVEIRAANEIDEAVAHAVRGSKEHAAGREGGVGG-------EGTTISPPVPAVARPSRPGRGRARLTKRS 256
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12995.5811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L2D8_9PHAE1.090e-2366.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12995contigM-pyrifera_M_contig12995:3652..5743 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-11_003330.1
Exons2
Model size282
Cds size282
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815804.8362412-CDS-M-pyrifera_M_contig12995:3651..37231622815804.8362412-CDS-M-pyrifera_M_contig12995:3651..3723Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12995 3652..3723 +
1692277578.2398946-CDS-M-pyrifera_M_contig12995:3651..37231692277578.2398946-CDS-M-pyrifera_M_contig12995:3651..3723Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12995 3652..3723 +
1622815804.8596425-CDS-M-pyrifera_M_contig12995:5533..57431622815804.8596425-CDS-M-pyrifera_M_contig12995:5533..5743Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12995 5534..5743 +
1692277578.2492802-CDS-M-pyrifera_M_contig12995:5533..57431692277578.2492802-CDS-M-pyrifera_M_contig12995:5533..5743Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12995 5534..5743 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12995.5811.1prot_M-pyrifera_M_contig12995.5811.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12995 3652..5743 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12995.5811.1

>prot_M-pyrifera_M_contig12995.5811.1 ID=prot_M-pyrifera_M_contig12995.5811.1|Name=mRNA_M-pyrifera_M_contig12995.5811.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=94bp
MTYSSSKASVVAAAAEVGTTVDHMVEIRAANEIDEAVAHAARDAADQAAG
GVGAGGGGGGAFGGERATIVSPVPAVSRPSRPGRGRARLTKRA*
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mRNA from alignment at M-pyrifera_M_contig12995:3652..5743+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12995.5811.1 ID=mRNA_M-pyrifera_M_contig12995.5811.1|Name=mRNA_M-pyrifera_M_contig12995.5811.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2092bp|location=Sequence derived from alignment at M-pyrifera_M_contig12995:3652..5743+ (Macrocystis pyrifera P11B4 male)
ATGACCTACTCCTCGAGTAAAGCCAGCGTTGTCGCCGCGGCCGCGGAAGT
GGGCACAACGGTCGATCACATGGTGAGGGTTCCCCATTGTTATTGCGTTC
GCTGCAATAAAACAGCCCCCTACCCAATCTCGCCTAACAATATCGTACAC
TTTTGAAGGCGATTCCCCTGATTTCATGTCCCCGAATTTCAAAAAATCAA
AGACTCTATTCTCAGAACGTTCTATTTTGTTTTTTTTTTATTTGGTATTT
TTGTGTTTCGTTGTGCTGGAGGAACCCTCCACGCCAGCGAAACGCGGCGA
GGACGAAATGGTTCGACGCCCAAATGAACACGCTTGAACTTCAACAACAA
TGACAGCAGCAACAATACAACGACAAAACAACAAAAGTGATGGACGACGA
CAGCCTTTTTGTCAGTGCCGGGTGCTCACTGACGGGACAAGCTCTGCGGT
TCGCCCGCGTGCACACCAATCAGCCGCCGTGTTCATTTCATACCGTATAT
CACACGTGTGATCGGATAAAGCACCCCCTAGCACCAAGCCTTGAAGCGGT
TTTCTACGTGTCAAGGGGGGCACATACAACCACACCGATGGCTTTAGAAA
TATATTGGCCAAACCTTTTCATAGGTATGTGTATGTGACGCATGCTACAG
TAGAGGCGCACCATTTGTTTTCTGAGGCTCCTCGCTTGACCTTAAGGAGC
TCTATTCTTCACCCGAAAACTGACTTCAGAAAACGTCAAATTGTATCCCG
ATGAATAATCCCATCGCCCAATTATACAAAAACGCCATTTTTCGAAACAA
GATTGGCATTCCGACGATTTTGGGTTAAGGAGCCCCGTCATTAACAAAGA
AACATAGCGAAAATGTGCCACCTCTATCGTGGAACGCGTCATTTGTATGT
AGGCGTTTTCGCTCTCCCCGTTGTCGGGAAAATCAGCTTCGAAATTTCGT
CCGAGAGGGTGTGTTATCATCGTATCGCCCGTGTGGTATCAGATCTGCCC
ATTCAGACATTCAGGCCAACTTCCTTAGGTGTGCCCGAACCGCACATGGA
GCATTCTCAAGCATAAAGACCAGCTGGCACATTAATCCACCCAAGCAGGC
CTCTGGTTAGAGTTAAGGTTAGGATTAGAGTTCCGGGTGGGGATGGTGGC
CGCCGCTAGCCGAAGCCGAAAATAATGTCACCGTTGGGGGAAAATGCCTT
TTACGTTTTCGTGGCGAAAACGATACCTCGTCGGAATAGCATCATTTTTT
TCGGGCACGTCTGAGGAAGTTCGCCATAACGAGCAGATTTGCGCCAGCTG
GTGTTGTGTTGAAGGCTCCGCATGCGGTATATACTAAGGCCTATATGTTG
CGTGCTCTGCATGTGGTATATACTTCGGCCTATATTGGCGTGCATCTCTC
TCTATACCTTCTTGCCCATCCTCAGCAACACTCAACAACCTACGTACAAC
ATATATACGCCAACTTATAAATCATTGGCCAAGCTTGGTGATTTTTGGAG
GGGTACAAGGGGAACGTAAGCCACACTCAAGGTGCGAATACGAACAATTT
ATAGAGGGGGTCGTGGTGGATACCGGGTCCTATCTCCCAGATCGTACCGC
CTCGTTTCCACTGTAGTCCTTCAAGGCAATCCTGACTACCCGGGGGCACT
CTGAGATTACTGGTAGATTAAAGTCTATTGCTGACCTGACTCCCGAGAGT
GTGGCAAGTGGCAGCACCACCCAAGCCACCTTCCCTCGGTGTGTCTCTGC
GCCCAAACAGACGAAAATGATTGCCTGCTACCTGCTGCCGGACTACCGCC
CCACATCAATAATAAAGCCCATAGCAACCCACAATACCCACGCCTACAAC
AATCCACGGCGGCTACAACCCGCGTTCACCAGGTGGAGATTCGCGCCGCC
AACGAGATCGACGAGGCCGTGGCGCACGCTGCCAGAGACGCTGCAGACCA
AGCCGCGGGGGGGGTTGGGGCAGGGGGGGGTGGAGGGGGTGCGTTTGGAG
GCGAGCGTGCGACGATAGTCTCTCCGGTTCCAGCCGTGTCCAGGCCGAGC
AGACCAGGCCGCGGGCGAGCCAGGCTGACCAAGCGAGCTTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12995:3652..5743+

>mRNA_M-pyrifera_M_contig12995.5811.1 ID=mRNA_M-pyrifera_M_contig12995.5811.1|Name=mRNA_M-pyrifera_M_contig12995.5811.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=564bp|location=Sequence derived from alignment at M-pyrifera_M_contig12995:3652..5743+ (Macrocystis pyrifera P11B4 male)
ATGACCTACTCCTCGAGTAAAGCCAGCGTTGTCGCCGCGGCCGCGGAAGT
GGGCACAACGGTCGATCACATGATGACCTACTCCTCGAGTAAAGCCAGCG
TTGTCGCCGCGGCCGCGGAAGTGGGCACAACGGTCGATCACATGGTGGAG
ATTCGCGCCGCCAACGAGATCGACGAGGCCGTGGCGCACGCTGCCAGAGA
CGCTGCAGACCAAGCCGCGGGGGGGGTTGGGGCAGGGGGGGGTGGAGGGG
GTGCGTTTGGAGGCGAGCGTGCGACGATAGTCTCTCCGGTTCCAGCCGTG
TCCAGGCCGAGCAGACCAGGCCGCGGGCGAGCCAGGCTGACCAAGCGAGC
TTAGGTGGAGATTCGCGCCGCCAACGAGATCGACGAGGCCGTGGCGCACG
CTGCCAGAGACGCTGCAGACCAAGCCGCGGGGGGGGTTGGGGCAGGGGGG
GGTGGAGGGGGTGCGTTTGGAGGCGAGCGTGCGACGATAGTCTCTCCGGT
TCCAGCCGTGTCCAGGCCGAGCAGACCAGGCCGCGGGCGAGCCAGGCTGA
CCAAGCGAGCTTAG
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