mRNA_M-pyrifera_M_contig1297.5804.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1297.5804.1
Unique NamemRNA_M-pyrifera_M_contig1297.5804.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig1297.5804.1 vs. uniprot
Match: D8LSN0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSN0_ECTSI)

HSP 1 Score: 221 bits (562), Expect = 1.210e-70
Identity = 98/130 (75.38%), Postives = 110/130 (84.62%), Query Frame = 2 
Query:  224 AKYPQDALRCLASLKEPEGLLICPEHRNAYCVKEVSTLTEEDCGRTSYYGDKWNIQTNKCEYRKCEASCEESSWDFEFEGEPYERNRFCCDFNFCNGATGSIPRPSMRTLMTGMVSLLLAQAYIREQQAG 613
            A+YPQDALRCLASLKEPEGLLICPEHRN YCVKEVS L EEDCGRT+Y+GDKWN QT KCEYRKCEA+C ESSWDFEFEGE YERNRFCCDFN+CNG +    R  M   ++G+V+LLL   Y+RE+QAG
Sbjct:   13 ARYPQDALRCLASLKEPEGLLICPEHRNGYCVKEVSDLAEEDCGRTTYFGDKWNAQTGKCEYRKCEATCLESSWDFEFEGEAYERNRFCCDFNYCNGISRRFSRAGMSAWVSGVVALLLTLLYLREEQAG 142
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BLAST of mRNA_M-pyrifera_M_contig1297.5804.1 vs. uniprot
Match: A0A835YZS6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZS6_9STRA)

HSP 1 Score: 130 bits (327), Expect = 3.520e-35
Identity = 60/124 (48.39%), Postives = 84/124 (67.74%), Query Frame = 2 
Query:  230 YPQDALRCLASLKEPEGLLICPEHRNAYCVKEV---STLTEEDCGRTSYYGDKWNIQTNKCEYRKCEASCEESSWDFEFEGEPYERNRFCCDFNFCNGATGSIPRPSMRTLMTGMVSLLLAQAY 592
            YPQ AL+C +S+ EP G  ICPE  N +CVKE+   + + + +CGRT Y+GD +N ++ KCE RKC A+CEES+W +EFEG  Y+R RFCC++ FCN   G   RP+   L+  +V + +A AY
Sbjct:    6 YPQKALKCKSSMTEPFGQTICPEFANNFCVKEIMGMNAIAKANCGRTKYFGDTYNQKSGKCELRKCAAACEESAWSYEFEGITYQRQRFCCNYEFCNA--GGQTRPNT-ALLGVLVPVAMALAY 126
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BLAST of mRNA_M-pyrifera_M_contig1297.5804.1 vs. uniprot
Match: A0A482UVN1_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UVN1_9ARCH)

HSP 1 Score: 56.6 bits (135), Expect = 2.030e-7
Identity = 26/61 (42.62%), Postives = 41/61 (67.21%), Query Frame = 2 
Query:  398 KCEYRKCEASCEESSWDFEFEGEPYERNRFCCDFNFCNGATGSIPRPSMRTLMTGMVSLLL 580
            +C+++KC  +CEE +++F+FEG  Y R+R+CC+ +FCN   GS    +M   M  M+ LLL
Sbjct:    4 ECQFKKCSDTCEEETYNFDFEGRTYTRSRYCCNTDFCNA--GSRSYGTMGKGMGEMMVLLL 62
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1297.5804.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LSN0_ECTSI1.210e-7075.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YZS6_9STRA3.520e-3548.39Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A482UVN1_9ARCH2.030e-742.62Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1297contigM-pyrifera_M_contig1297:17445..21976 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-09_002280.1
Exons4
Model size662
Cds size534
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1297.5804.1prot_M-pyrifera_M_contig1297.5804.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1297 17491..21894 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815803.92076-UTR-M-pyrifera_M_contig1297:17444..174901622815803.92076-UTR-M-pyrifera_M_contig1297:17444..17490Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1297 17445..17490 -
1692277577.6412513-UTR-M-pyrifera_M_contig1297:17444..174901692277577.6412513-UTR-M-pyrifera_M_contig1297:17444..17490Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1297 17445..17490 -
1622815803.979396-UTR-M-pyrifera_M_contig1297:21894..219761622815803.979396-UTR-M-pyrifera_M_contig1297:21894..21976Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1297 21895..21976 -
1692277577.7172406-UTR-M-pyrifera_M_contig1297:21894..219761692277577.7172406-UTR-M-pyrifera_M_contig1297:21894..21976Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1297 21895..21976 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815803.9347773-CDS-M-pyrifera_M_contig1297:17490..175941622815803.9347773-CDS-M-pyrifera_M_contig1297:17490..17594Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1297 17491..17594 -
1692277577.6564996-CDS-M-pyrifera_M_contig1297:17490..175941692277577.6564996-CDS-M-pyrifera_M_contig1297:17490..17594Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1297 17491..17594 -
1622815803.9458752-CDS-M-pyrifera_M_contig1297:18010..181321622815803.9458752-CDS-M-pyrifera_M_contig1297:18010..18132Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1297 18011..18132 -
1692277577.6739872-CDS-M-pyrifera_M_contig1297:18010..181321692277577.6739872-CDS-M-pyrifera_M_contig1297:18010..18132Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1297 18011..18132 -
1622815803.956379-CDS-M-pyrifera_M_contig1297:19159..192461622815803.956379-CDS-M-pyrifera_M_contig1297:19159..19246Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1297 19160..19246 -
1692277577.688039-CDS-M-pyrifera_M_contig1297:19159..192461692277577.688039-CDS-M-pyrifera_M_contig1297:19159..19246Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1297 19160..19246 -
1622815803.9679635-CDS-M-pyrifera_M_contig1297:21673..218941622815803.9679635-CDS-M-pyrifera_M_contig1297:21673..21894Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1297 21674..21894 -
1692277577.7069175-CDS-M-pyrifera_M_contig1297:21673..218941692277577.7069175-CDS-M-pyrifera_M_contig1297:21673..21894Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1297 21674..21894 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1297.5804.1

>prot_M-pyrifera_M_contig1297.5804.1 ID=prot_M-pyrifera_M_contig1297.5804.1|Name=mRNA_M-pyrifera_M_contig1297.5804.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=178bp
MVWNCRCEACAFFRRRSDWSSRRRFVGVARAALLLILAAIAPGVTSAAKY
PQDALRCLASLKEPEGLLICPEHRNAYCVKEVSTLTEEDCGRTSYYGDKW
NIQTNKCEYRKCEASCEESSWDFEFEGEPYERNRFCCDFNFCNGATGSIP
RPSMRTLMTGMVSLLLAQAYIREQQAG*
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mRNA from alignment at M-pyrifera_M_contig1297:17445..21976-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1297.5804.1 ID=mRNA_M-pyrifera_M_contig1297.5804.1|Name=mRNA_M-pyrifera_M_contig1297.5804.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4532bp|location=Sequence derived from alignment at M-pyrifera_M_contig1297:17445..21976- (Macrocystis pyrifera P11B4 male)
GTGCACGACTCATTACGAGTCACGCACAGCATTGTGTGGAGACTGCCGTA
CACAATCAAGGCCAACCAGCTTAAATTAAAGCATGGTTTGGAATTGCAGA
TGTGAAGCTTGCGCATTCTTTCGCCGGCGATCCGACTGGAGCTCTCGTAG
GCGTTTTGTCGGTGTCGCCCGAGCGGCGTTGTTGCTGATTCTCGCCGCCA
TCGCCCCCGGAGTGACATCAGCAGCAAAATATCCGCAGGATGCGTTGAGG
TGCTTGGCCTCCCTCAAGGAACCGGAAGGGTTGCTCATATGCCCAGAGCA
TAGGTATGGTTAGCCTTAGGGGGGGGGCATGCGGACCGTATTCGTTGTGA
ACCGCATAAACACGCAAGATAACACACCCCCTGGGACAAACTACCTATGG
TACCAGGTACGTACATGCGTAGCTGATTTTCCCCAAACCAAAAGGGGGCA
CACGCAACAAAGATCGTCTCTTTGGGAAAAACGTCCCCGTTGTCGAGCAA
ATTAGCTTGCTAATTCATCCAAGTGTACCTATTGATTTGATTTGATTCAT
CTTCCAGGTATTTGTTATTTTCGCCCCTCTTTCATCTCTCCCTTCTGGCG
ATGAGTACGGAGCAATGGTAGTAACGTGGTGTGGCTGGGAGCGGGTGGGA
GGGGGGGGCGGGGGGTGGTGACGGTGGCGGCAATAAAGACGGCGGCAGCG
GCGGGCGGGCCATTGTATTGGACAACCCACAGCATCAGTAAGTTCCTTGA
CGATTGGTCGTGGAGGTCGCTAAACCCTCCTACCATATTAGTAACTCAGA
TCCGGGGTCACATAATATTAGGCTTTCCTCCCCCCGCCCCCCTACGGTTC
GTGCCTTGCCTTGTTCTTGCTGAATCAATATAATTTCGTTATCTAGACTC
TGACTCTTGTGGGAGCCGAAACCGGGAAACAGAACAGGGTTTGTAGAGGG
ATCCAGGAAGAATATCGTGCCAGATCTGATTTATCGAATCTTGTCGATGG
ACAAAAAACAGAAATCTCTGTAATGGTTTCTGTATTCCGATCAGAAATGG
CGTGGCCAACCGAAATCAGACACCAGTTCTGTACCGGTCCCAGAGCTGGC
CGAAACTGGTTTTGAACCCCACGTACGAGGAGGCATAACGCGGCGGGCCT
AATACTTGTACATATCATCGCTTCTACTGCTGCTGTACTCTCCCGGTATC
TCTGACACGATATCCCGGCATATAGCCGTAGTATAGCTAGAGACTCCAAG
CTCCTGTGATGGCGAACAACCAACTACACCGCATGCTCTTGACGGTTGTC
GTTGTGTTCTTGAGCTAGCAATGCCAACGCACTGCTTCTTGATGCTGCAG
CAGACTGCCAAGCTTGAGGACCCTTTGTCCAAGGAAGCCAACCCAGTCCA
GGAAGCTCGAGTTTGCGAAAGCAAACCCTATGTTACCCGGCGGGTACCAA
ACAGGATGCGTGGGTGCCGTGTACGGCTGTGTGTCCGCCGAATTGAAATC
TTATAGCGGTAACTCCTCCCTCCAACATCCTCCCAACTCAAACGAAACCC
CGGCAAACTTACTCGTCATCGCCATTGACTTACACAAAACACCATAAGAG
AGGAAAATACGAAACTCGATATGCGAATCTGGGCCATACGAAAAACAGAA
GTGCATGCCAGTTGTGTTTTCTGGTTTCGGCTCGCATAAGATTCAGCCTG
ATTGCAGAGGAATTATTGTGGAGATTTTTGTTTCCATGCATTGAATCGCT
TTTTTAAGGTCTTGCTTTTCATCCTTCCCATGGGGGCTTATGCACACGCC
TTGGCACGATACGCTTTTCAATACTTATCTTGACTTATCCCATAAATATT
GTGATTTCTGATCGCACAAATAGACGGTCTACAAAGTCCGTTTCCTGGCG
CTCCTTTCATCGCGTGTCGCGGTTGGCACCCCCTCCGCCCGCCCACTGAG
CGATGTCGAATGGTGCTCGATTGTAGCCGTGCATTTGCACGCAGCATTCT
TCCGAAGGCACGCGCCGGACCTGAGTCAAAGCTGCCCCCCCTCGATTTTG
TCGACTCCATCCGTTGGCAGAAGACAGAAGAGGCTTCGCAAAGCGAATAC
TCGTACAATCGATCCGTTGAAGGGCTCAAAACCCCACCAACCACCCAAAC
TTTGCAGACTTGTCCGTCGAATAACAATCGAGGTGAGTATGCATGCAAAC
GGCAACGGACTAGAGCAAGCAACCTATTAAACATCGGGTTTTTTCTGGTG
TTATGCCCGAAGCAAACGAAAATTTACGCAGCGCCTATCTCTCTACTTAT
TTAGTTGTCGTGTTTATGATTTGAATGCATGCTATTTATTCTAGGATTAG
AAGCTTGCCTTGAAATACCAGCGTAATCATCCTTGATATACTAATGTTCA
CCCCGGGGCAACGAGGATTGTGTGCTTCTATCAGATACAGTAGCAAGCCG
CACGAACGAAAAAAGACGAGGCAACGATGGCGTGCGTCAGTGTAGCATCA
CGGCTTTTCCTGAAACAAGCGTGAGCTTGGGTCTAACAAAGATACGCCGC
TTGTCCTCTCAAATTAATACAGTAAGAAGGCAAAGCAACTGTTATAGTAG
TGCTGGGGGTGGGATGCAGACTTCTTACGTGAAAATGCAGCAAGGAAATG
ACAAGGGCTGTCAACCTCGTGGCGGTACGTAACAAGCATCGCTGACATTT
GTTTGGCTGTCGATAACACGCTCCGCTTAGGAACGCTTACTGTGTGAAAG
AAGTATCGACCTTGACGGAGGAAGACTGTGGTCGAACAAGCTACTACGGA
GACAAATGGAATATCCAGTGAGTAGGATAAGCCATCCGCCGTTTTGTTTA
TTTATAGACCGTCATAAATTACCTGTCAGTAGCGCAAGTTGAACTTAAAT
CACAGGAACATACCGGTCCTTGCAGAGGAGCGATACGGTGGTTGACGTTG
GCTGTCGTTTCGATTGATGGGAACGTGAATTGTAAAGCCTTGCAATGGTG
TGGCTTCTACTGGTAGTCTGTCTGGGGCACCACACAGCGGGCCCGGGAGT
CGAGACAAACAGAAAAATATTTTTCAAGTGTGCCCCCCTTTGTCGCATAG
CTGCATAGCTCCAAGGACAGTCCGGCGTACCACTGTAGTACTGCTTGAAT
CACTGCACTACAGACGATTCCTTTGTTGTCATTGGCAGCAGGCCACGCGA
GCGAACGGAGCGCAAGCCATTCTTACTTTCTTGCTCGCCTGGACGATTCA
GTGCCAGACTACTGTACCAACCGACAAAACTTTTTCTCGCCGTTGGAAAC
GACCGCATTTTTTCGCCCTATGGCACGCCACACGTCGCATAGTGTTAAGT
GTTAGGCGGTATGGACCTAGGGATCGATTACTGCTAGCAGGTTGATGCCG
TTGCCTCTGCTCTGGTTCCTCGCATGAGGTGCTTGACGATGTTAGAAGCT
ATAAGCTCTTTTATTAGTTGCTGCTTGCCTCGCGACATGACTTCTGAACG
AAGGAGCGAGGTGTTCATCAGAAAGGCAGGCGATAACGCCTGCCAGGAAT
GATGAGGGGAGGATAGCTACAAACCAGAATGCAGCAACAGGGGAGAGGGG
ATACCATAACACTAGCCCACCCTGAAAGGACGAATGTGCAGATTCATAGA
AAACCCAGGCACGAACTAAACCAATCCGGAGAATTCGGAGAATGGATCGA
AGATGCGGCACTTCACAACCCACTCCCACACCTTTAACTTGCAAGCTTAT
AGCCGATTAGGATGGGACACTGGGATCACACGCGTCATTTCGGGAGTTTG
GTAACAAAATCTTAGAATAAACTGCTGTTTCTTTCTCTTTGCAGGACGAA
CAAGTGCGAATACCGCAAGTGTGAGGCATCCTGCGAGGAATCTAGCTGGG
ACTTCGAGTTCGAGGGGGAGCCATACGAGAGAAATCGCTTCTGCTGCGAC
TTCAACTTCTGCAATGGTGATATATTCAGCAGTAATATACGCGACAGCAG
TAATAAAATGTGGAGTCAAAATGTTTTGGCTCGACTTTTGCACGAATCTT
GGGGTTGATTGTTTGTATTACTGAAATTAGTACTCTGTCTCGCACAAGAA
TTCGGGGTTGGGAAAAGCGCCACGTTTGGCCTGTCGTGGACACACTTTAT
CGCAGCGGTACAAAGCAACCGTGAGATCGAGCGGGTTATTTTTTTACCTT
CGTAAGAATATAATCAACTGCAGTCCAACCACGAAGAACGTTCCTATATT
ATGTGCAGCATATCCTCTGACGCCGTTCACTCAACATCCGCTTTCATACA
GCAAGAAGAAAACCCAGGGAAAACATTGAGAAGTCAGTATTTTCTCTACA
TCGACACCGGTTGCGCTCTTCTCGCCCCTCAGGTGCAACTGGCAGTATAC
CAAGGCCTAGCATGCGGACGCTGATGACCGGCATGGTCAGCTTGCTCCTA
GCTCAAGCATACATCAGGGAGCAGCAGGCCGGGTGATACTCCCCACTCAC
ACGCAGTGGCTGACGATACCACACAGCAGCCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1297:17445..21976-

>mRNA_M-pyrifera_M_contig1297.5804.1 ID=mRNA_M-pyrifera_M_contig1297.5804.1|Name=mRNA_M-pyrifera_M_contig1297.5804.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1068bp|location=Sequence derived from alignment at M-pyrifera_M_contig1297:17445..21976- (Macrocystis pyrifera P11B4 male)
ATGGTTTGGAATTGCAGATGTGAAGCTTGCGCATTCTTTCGCCGGCGATC
CGACTGGAGCTCTCGTAGGCGTTTTGTCGGTGTCGCCCGAGCGGCGTTGT
TGCTGATTCTCGCCGCCATCGCCCCCGGAGTGACATCAGCAGCAAAATAT
CCGCAGGATGCGTTGAGGTGCTTGGCCTCCCTCAAGGAACCGGAAGGGTT
GCTCATATGCCCAGAGCATAGATGGTTTGGAATTGCAGATGTGAAGCTTG
CGCATTCTTTCGCCGGCGATCCGACTGGAGCTCTCGTAGGCGTTTTGTCG
GTGTCGCCCGAGCGGCGTTGTTGCTGATTCTCGCCGCCATCGCCCCCGGA
GTGACATCAGCAGCAAAATATCCGCAGGATGCGTTGAGGTGCTTGGCCTC
CCTCAAGGAACCGGAAGGGTTGCTCATATGCCCAGAGCATAGGAACGCTT
ACTGTGTGAAAGAAGTATCGACCTTGACGGAGGAAGACTGTGGTCGAACA
AGCTACTACGGAGACAAATGGAATATCCAGAACGCTTACTGTGTGAAAGA
AGTATCGACCTTGACGGAGGAAGACTGTGGTCGAACAAGCTACTACGGAG
ACAAATGGAATATCCAGACGAACAAGTGCGAATACCGCAAGTGTGAGGCA
TCCTGCGAGGAATCTAGCTGGGACTTCGAGTTCGAGGGGGAGCCATACGA
GAGAAATCGCTTCTGCTGCGACTTCAACTTCTGCAATGGACGAACAAGTG
CGAATACCGCAAGTGTGAGGCATCCTGCGAGGAATCTAGCTGGGACTTCG
AGTTCGAGGGGGAGCCATACGAGAGAAATCGCTTCTGCTGCGACTTCAAC
TTCTGCAATGGTGCAACTGGCAGTATACCAAGGCCTAGCATGCGGACGCT
GATGACCGGCATGGTCAGCTTGCTCCTAGCTCAAGCATACATCAGGGAGC
AGCAGGCCGGGTGAGTGCAACTGGCAGTATACCAAGGCCTAGCATGCGGA
CGCTGATGACCGGCATGGTCAGCTTGCTCCTAGCTCAAGCATACATCAGG
GAGCAGCAGGCCGGGTGA
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