mRNA_M-pyrifera_M_contig1297.5803.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1297.5803.1
Unique NamemRNA_M-pyrifera_M_contig1297.5803.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1297.5803.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1297contigM-pyrifera_M_contig1297:11860..12360 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size503
Cds size372
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815803.8756766-CDS-M-pyrifera_M_contig1297:11859..122311622815803.8756766-CDS-M-pyrifera_M_contig1297:11859..12231Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1297 11860..12231 +
1692277577.618987-CDS-M-pyrifera_M_contig1297:11859..122311692277577.618987-CDS-M-pyrifera_M_contig1297:11859..12231Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1297 11860..12231 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815803.8860502-UTR-M-pyrifera_M_contig1297:12231..123601622815803.8860502-UTR-M-pyrifera_M_contig1297:12231..12360Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1297 12232..12360 +
1692277577.6304572-UTR-M-pyrifera_M_contig1297:12231..123601692277577.6304572-UTR-M-pyrifera_M_contig1297:12231..12360Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1297 12232..12360 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1297.5803.1prot_M-pyrifera_M_contig1297.5803.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1297 11860..12231 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1297.5803.1

>prot_M-pyrifera_M_contig1297.5803.1 ID=prot_M-pyrifera_M_contig1297.5803.1|Name=mRNA_M-pyrifera_M_contig1297.5803.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=124bp
DGDDAGNTEEEEVGYNLEEDVGSNLERGFDDILEEAKQNSVTSDDVVGQL
PAASTIETTRSPMQVEVAQSHPLPEVDEGEVEEREVGERSSESSESEDSD
SASEEQSDDDQAIKGFEDFLSGL*
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mRNA from alignment at M-pyrifera_M_contig1297:11860..12360+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1297.5803.1 ID=mRNA_M-pyrifera_M_contig1297.5803.1|Name=mRNA_M-pyrifera_M_contig1297.5803.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=501bp|location=Sequence derived from alignment at M-pyrifera_M_contig1297:11860..12360+ (Macrocystis pyrifera P11B4 male)
GATGGTGACGATGCTGGCAACACGGAGGAAGAAGAGGTGGGGTACAACTT
GGAGGAAGATGTGGGGTCCAACTTGGAGCGGGGATTCGATGACATTCTTG
AAGAGGCGAAACAGAACAGCGTCACTTCCGATGACGTGGTTGGCCAATTG
CCGGCAGCAAGCACAATCGAAACGACACGCTCGCCTATGCAAGTGGAAGT
CGCCCAAAGCCATCCATTGCCAGAGGTAGACGAGGGGGAAGTGGAAGAGC
GGGAAGTCGGCGAGAGATCATCTGAAAGCTCGGAATCAGAAGATAGTGAT
AGTGCCTCGGAAGAACAGTCTGATGACGATCAGGCTATCAAGGGATTCGA
AGATTTCTTGTCCGGGCTGTAAGGGCTCGCCGCAACGGCTTTCCTGGACC
GGATTGACTGCTCCGATCGCACAGCGTGCGTATCACTGATGCCGATTGGC
GTTTGCTAGAGCATGCTGTAGATAAACGGTTAATTGAACATTGTGCAAAA
G
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1297:11860..12360+

>mRNA_M-pyrifera_M_contig1297.5803.1 ID=mRNA_M-pyrifera_M_contig1297.5803.1|Name=mRNA_M-pyrifera_M_contig1297.5803.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=744bp|location=Sequence derived from alignment at M-pyrifera_M_contig1297:11860..12360+ (Macrocystis pyrifera P11B4 male)
GATGGTGACGATGCTGGCAACACGGAGGAAGAAGAGGTGGGGTACAACTT
GGAGGAAGATGTGGGGTCCAACTTGGAGCGGGGATTCGATGACATTCTTG
AAGAGGCGAAACAGAACAGCGTCACTTCCGATGACGTGGTTGGCCAATTG
CCGGCAGCAAGCACAATCGAAACGACACGCTCGCCTATGCAAGTGGAAGT
CGCCCAAAGCCATCCATTGCCAGAGGTAGACGAGGGGGAAGTGGAAGAGC
GGGAAGTCGGCGAGAGATCATCTGAAAGCTCGGAATCAGAAGATAGTGAT
AGTGCCTCGGAAGAACAGTCTGATGACGATCAGGCTATCAAGGGATTCGA
AGATTTCTTGTCCGGGCTGTAAGATGGTGACGATGCTGGCAACACGGAGG
AAGAAGAGGTGGGGTACAACTTGGAGGAAGATGTGGGGTCCAACTTGGAG
CGGGGATTCGATGACATTCTTGAAGAGGCGAAACAGAACAGCGTCACTTC
CGATGACGTGGTTGGCCAATTGCCGGCAGCAAGCACAATCGAAACGACAC
GCTCGCCTATGCAAGTGGAAGTCGCCCAAAGCCATCCATTGCCAGAGGTA
GACGAGGGGGAAGTGGAAGAGCGGGAAGTCGGCGAGAGATCATCTGAAAG
CTCGGAATCAGAAGATAGTGATAGTGCCTCGGAAGAACAGTCTGATGACG
ATCAGGCTATCAAGGGATTCGAAGATTTCTTGTCCGGGCTGTAA
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