mRNA_M-pyrifera_M_contig12951.5796.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12951.5796.1
Unique NamemRNA_M-pyrifera_M_contig12951.5796.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12951.5796.1 vs. uniprot
Match: D7FHL8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHL8_ECTSI)

HSP 1 Score: 199 bits (505), Expect = 2.930e-60
Identity = 95/107 (88.79%), Postives = 103/107 (96.26%), Query Frame = 1 
Query:    1 FVGLAPEGEVLVQGVNCLGRCNKGPNLRVRQKDGSWLEFNRIDSVEKVYKILRDYLGADVSKEAALCLKYNFSANSALDRNEVTLAIDYYDKAIATGYMDQQGVLLV 321
            FVGLAPEGEVLVQGVNCLGRCNKGPN+RVRQ+ G+WLEFNRI++VE+VYKILRDYLGADVSKEAALCLKYNF AN+AL+RNEVTLAIDYYDKAI TGY DQQGVLLV
Sbjct:  213 FVGLAPEGEVLVQGVNCLGRCNKGPNVRVRQETGNWLEFNRIENVERVYKILRDYLGADVSKEAALCLKYNFLANAALNRNEVTLAIDYYDKAIDTGYADQQGVLLV 319
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BLAST of mRNA_M-pyrifera_M_contig12951.5796.1 vs. uniprot
Match: A0A835YYQ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYQ6_9STRA)

HSP 1 Score: 158 bits (399), Expect = 2.340e-44
Identity = 81/123 (65.85%), Postives = 92/123 (74.80%), Query Frame = 1 
Query:    1 FVGLAPEGEVLVQGVNCLGRCNK----------------GPNLRVRQKDGSWLEFNRIDSVEKVYKILRDYLGADVSKEAALCLKYNFSANSALDRNEVTLAIDYYDKAIATGYMDQQGVLLV 321
            FVGLAPE EVLVQGVNCLGRCN                 GPNLRV Q+DG+WLEFNRIDSVE+VYKILRD+L   VS+ AA CLKYNF  NS LD+NEVT AI+ Y+KAI+ G+ DQ+GVLLV
Sbjct:   43 FVGLAPEDEVLVQGVNCLGRCNXXXXXXXXXXXXXXXXXGPNLRVLQEDGTWLEFNRIDSVERVYKILRDFLSVGVSRTAAECLKYNFQGNSHLDKNEVTEAIECYNKAISMGWADQEGVLLV 165
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BLAST of mRNA_M-pyrifera_M_contig12951.5796.1 vs. uniprot
Match: A0A7R9U417_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U417_9STRA)

HSP 1 Score: 137 bits (346), Expect = 2.190e-37
Identity = 62/107 (57.94%), Postives = 82/107 (76.64%), Query Frame = 1 
Query:    1 FVGLAPEGEVLVQGVNCLGRCNKGPNLRVRQKDGSWLEFNRIDSVEKVYKILRDYLGADVSKEAALCLKYNFSANSALDRNEVTLAIDYYDKAIATGYMDQQGVLLV 321
            F+GL P+  VLV GV CLG+CNKGPN+++  ++G+W E NR+DSV+KVY+IL D+L   VS  AA CL++NF  N+ LDRNEVT AI  Y+KAI  G+ DQ+GV+LV
Sbjct:   62 FIGLIPDDNVLVSGVGCLGKCNKGPNIQIMHRNGTWYELNRVDSVDKVYRILTDHLQCRVSPAAAECLQHNFEGNAHLDRNEVTQAIASYNKAIDAGFKDQEGVILV 168
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BLAST of mRNA_M-pyrifera_M_contig12951.5796.1 vs. uniprot
Match: A0A4D9DHN8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DHN8_9STRA)

HSP 1 Score: 114 bits (285), Expect = 8.860e-29
Identity = 55/108 (50.93%), Postives = 77/108 (71.30%), Query Frame = 1 
Query:    1 FVGLAPEG-EVLVQGVNCLGRCNKGPNLRVRQKDGSWLEFNRIDSVEKVYKILRDYLGADVSKEAALCLKYNFSANSALDRNEVTLAIDYYDKAIATGYMDQQGVLLV 321
            F+GL P G +V VQGV+CLGRCN+GPNLR+ + +G++ E + +DSV+KVY +    LG  +++ +A CLK NF  N+ LD+NEV  AI+ YDKAI   +  Q+GVL V
Sbjct:   12 FIGLTPYGSKVRVQGVDCLGRCNRGPNLRLLRSNGTFEELSYVDSVDKVYDVFTSQLGIRINQSSADCLKLNFQGNAHLDKNEVDRAIECYDKAIPLSHRGQEGVLRV 119
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BLAST of mRNA_M-pyrifera_M_contig12951.5796.1 vs. uniprot
Match: W7U8R6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U8R6_9STRA)

HSP 1 Score: 114 bits (285), Expect = 3.570e-28
Identity = 55/108 (50.93%), Postives = 77/108 (71.30%), Query Frame = 1 
Query:    1 FVGLAPEG-EVLVQGVNCLGRCNKGPNLRVRQKDGSWLEFNRIDSVEKVYKILRDYLGADVSKEAALCLKYNFSANSALDRNEVTLAIDYYDKAIATGYMDQQGVLLV 321
            F+GL P G +V VQGV+CLGRCN+GPNLR+ + +G++ E + +DSV+KVY +    LG  +++ +A CLK NF  N+ LD+NEV  AI+ YDKAI   +  Q+GVL V
Sbjct:  216 FIGLTPYGSKVRVQGVDCLGRCNRGPNLRLLRSNGTFEELSYVDSVDKVYDVFTSQLGIRINQSSADCLKLNFQGNAHLDKNEVDRAIECYDKAIPLSHRGQEGVLRV 323
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BLAST of mRNA_M-pyrifera_M_contig12951.5796.1 vs. uniprot
Match: A0A7S3XUL9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUL9_HETAK)

HSP 1 Score: 89.7 bits (221), Expect = 1.810e-19
Identity = 43/99 (43.43%), Postives = 66/99 (66.67%), Query Frame = 1 
Query:   22 GEVLVQGVNCLGRCNKGPNLRVRQKDGSWLEFNRIDSVEKVYKILRDYLGADVSKEAALCLKYNFSANSALDRNEVTLAIDYYDKAIATGY-MDQQGVL 315
            G V V GV+CLGRC +GPN+R +    +WL+F+ +DSV++  +IL + +G  VS++ A CL  N   N  L  N+V  A+++YD+A+A G   DQ+GV+
Sbjct:    5 GAVNVDGVSCLGRCKRGPNVRCQLGRDAWLDFSGVDSVDQARQILVETMGVPVSQKVATCLDMNLKGNYYLANNKVGKALEHYDRALAAGRGTDQEGVV 103
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BLAST of mRNA_M-pyrifera_M_contig12951.5796.1 vs. uniprot
Match: A0A7S1Z4G4_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z4G4_TRICV)

HSP 1 Score: 70.1 bits (170), Expect = 2.730e-12
Identity = 33/69 (47.83%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:  118 NRIDSVEKVYKILRDYLG-ADVSKEAALCLKYNFSANSALDRNEVTLAIDYYDKAIATGYMDQQGVLLV 321
            N +DSV+KVY+IL  ++G A +S  A  CLK+N+  N+ L++ ++  AI  YDKAI TGY++Q+GV+L+
Sbjct:    2 NNVDSVDKVYRILTKHMGIAGISSVACECLKWNYRGNAHLEKGDIADAIAAYDKAIDTGYVEQEGVVLL 70
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12951.5796.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FHL8_ECTSI2.930e-6088.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YYQ6_9STRA2.340e-4465.85Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9U417_9STRA2.190e-3757.94Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A4D9DHN8_9STRA8.860e-2950.93Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7U8R6_9STRA3.570e-2850.93Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A7S3XUL9_HETAK1.810e-1943.43Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S1Z4G4_TRICV2.730e-1247.83Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12951contigM-pyrifera_M_contig12951:5453..8124 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-24_004090.1
Exons3
Model size324
Cds size321
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12951.5796.1prot_M-pyrifera_M_contig12951.5796.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12951 5453..8123 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815803.3186667-CDS-M-pyrifera_M_contig12951:5452..55111622815803.3186667-CDS-M-pyrifera_M_contig12951:5452..5511Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12951 5453..5511 +
1692277577.2646909-CDS-M-pyrifera_M_contig12951:5452..55111692277577.2646909-CDS-M-pyrifera_M_contig12951:5452..5511Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12951 5453..5511 +
1622815803.3326974-CDS-M-pyrifera_M_contig12951:7523..76411622815803.3326974-CDS-M-pyrifera_M_contig12951:7523..7641Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12951 7524..7641 +
1692277577.27775-CDS-M-pyrifera_M_contig12951:7523..76411692277577.27775-CDS-M-pyrifera_M_contig12951:7523..7641Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12951 7524..7641 +
1622815803.3463125-CDS-M-pyrifera_M_contig12951:7979..81231622815803.3463125-CDS-M-pyrifera_M_contig12951:7979..8123Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12951 7980..8123 +
1692277577.2870772-CDS-M-pyrifera_M_contig12951:7979..81231692277577.2870772-CDS-M-pyrifera_M_contig12951:7979..8123Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12951 7980..8123 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12951.5796.1

>prot_M-pyrifera_M_contig12951.5796.1 ID=prot_M-pyrifera_M_contig12951.5796.1|Name=mRNA_M-pyrifera_M_contig12951.5796.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
FVGLAPEGEVLVQGVNCLGRCNKGPNLRVRQKDGSWLEFNRIDSVEKVYK
ILRDYLGADVSKEAALCLKYNFSANSALDRNEVTLAIDYYDKAIATGYMD
QQGVLLV
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mRNA from alignment at M-pyrifera_M_contig12951:5453..8124+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12951.5796.1 ID=mRNA_M-pyrifera_M_contig12951.5796.1|Name=mRNA_M-pyrifera_M_contig12951.5796.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2672bp|location=Sequence derived from alignment at M-pyrifera_M_contig12951:5453..8124+ (Macrocystis pyrifera P11B4 male)
TTCGTGGGCCTCGCGCCGGAGGGGGAGGTGCTGGTTCAGGGGGTCAACTG
CCTCGGAAGGTGAAGCTGCCATGGCATATTTTTTTTATTTCGTCATGTAT
TCGTACTCGTAAGTTCGAGTCCCGCGGTGGTCACGAATGTAAATGAAGCC
GATGCTCCCAGCGAGAGCCGATGATGTCGCGGAGAAGTCGCCGTGGAGAG
GTCGCGAAGCGAGGGTCCCTTGTAGCCGTCGTTACGGCCGACGTAAGCCG
AGCAGAGTTCTTTGTCGTATGTAGCAAGGCAAGGCAAGGCATTGCCAGAC
GAGGCAAGGCAAGGCATTGCCAGACCCAAGAGGGTCGAGGTTATTAGAGT
AACACCGCAGGGGGTCACAAGAACCGGACCTGATCGGATCGATTCTGGAG
GTCCTCGTAGTCAGCTTGAGGGGAGAGGTCAACGCGGTCCATGCTGCGGA
CCTCTAACAACACGATGTGTAGTCCGGTGGGAACTTTCATGCATGACTTT
GAGAGGCATCCTTCCTTGCATGCGTGTTCCGAGGTCTACGGCCGATACGT
CTTACCCTGTGCGTGACAGGAACATATGATGATAATATTCGTTTCGTAAA
ACATATATAGGAATGCCATGGTTGAGTGGGTGAGTCGTGGGTTCCAGGTT
CTGGACTATAGCGCTCCCGGAATACGTACAAGTAGCCCGTTTGGGCGGTG
TTCTTGACGGTGTTGTGGCCGTCGTGCCTAGACCCGGAGGCGTCAACGTT
GTACTTGTTGGATAACCTACCACTCTGCTGACTGAGTCAGCGCCGACTGA
GTAGGGTAGTGAGCTATCTCTTCTAGCCAACGTCCAACGTGTACATTTGT
TGTTGTTGCTGTTTTGCCGTCCCGTGTTTTATATGCGCCCTTATTTTCTC
TCTCCATCCTCTTGGAAGTAGTTGCTCAGATCCGGGGTCACGCAGTAGCA
ATAGGCTCCCATCCCCCCTCCCCACCACGATTCGTGCCTGGTTTTCTTTG
TCGCGAGAAGCTGCAGCCCTTTCTTCCCTCGTTGAGTCGTGTCGGATGTG
TTTCTGGTACATGTTTGTTTTTTTGTCATCGTTTTTTGGTTTTCCAGCTC
AGCTCTTGGGAGGGTATGCCCTCAGCAGCATTCTGGACTATATCCGTAGC
AGACTACAGCTGTCGCCGTGGTCACAAGCGTCTTCTCTCCTACGCGCATA
GGGTCTAGCTTTCCACAGCTACTGCAGTTACTGTAAGACATATCATGATA
TTTAGTAGGTCATCTAGTTCCTGAGCTGCCATCGTGAGAGTTTCTTCAGG
ATCTGCGCAGTACAGATCCGACCCAGGAAACACATGCTAACACATGCAGA
TTATATACGGCTCCCATCCTAAAACATGAGCTGCAGTAGATATTACAACT
CAGGAAGACAACGTCTGCCTTGAAAAGTCTAGATCATGAACTGTGGGATC
GATCTATCTCATCTATCTCGTCTGTCCGAGGTGTTCGGCATTCCCAATGT
TCGTCGACTTTCGTATTTTTTTTCAAAATAGGTTGTTTACGGCGTCGCGG
CCGTCGTGCTCGGGTTGGACGGGGTGATTGGGAGATGGTGCTTGATTGGT
GACCCTGGTTGTGCGCGCGCGTACATGGACTGCTGTAGCGTTAGCAGCAC
TTGCCTGTCTATCGGGCGGCATGCTTTGTTCTCGGCGATGCAACAACGGA
CCCAACCTGAGAGTGCGCCAGGAGAGTAGCACCTGCTTTGTGTGCTATGT
CAGTATTTTCCAGCATCAGCAGTATCACCAGTATCACCAGTACCGCTAGT
ATCACCAGTACCACCAGTATCACACCAGTACCGCCAGTATCACCAGTATC
ACCCGTAACACCAGTATCACCAGTACCCTTTGCAGTATTTATGACTCCGT
GGGATGCCATGCGTTGTGCAGAAAGGGTGCAACAAGGAACCCAACCTGAG
GCACCTAAATACGGTAGTCAGTCTTGCCGGTATCTTCCCGCACCACCAGT
ACCACCATCGGTACTTACGGTTCCATTGCCCTGTCTATCTGCCTATCTGG
TGGTTCGTGTTGTGGCGGAAGGTGCAACAAGGGACCCAACTTGAGGGTGC
GCCAGAAAGATGGGAGCTGGTTGGAGTTCAATCGCATCGACAGCGTGGAG
AAGGTGTACAAGATCCTCAGGGACTACCTGGGTGCCGATGTAAGTCCAAG
GGGCGCTACGAGTAGCCCAGCCTGAACCTCGATTTCTTCTAAGTTGGGTA
GTTGTAGTAGTTACATCTGTAACCTTACCTGTACCATGAACTGCTGTAGT
TCCTTGTATCGCAACGTTTAACGCCGAAGGTTGGTCGGTAAACGCCGAAT
GCTGTCGGTAAGTGGCTAATGCTGTCGGTTGACTGGTGCCGTTGTACTGC
ATGAGGAAGCATTGCTGTAGTCTCGAGGATAGCTTCTCCGTTGCCAATGC
TTTATGCCGTCGGCAATGCTTAATGCTGTCGGTAAATAGCTGTGTGGTGT
CATTTGACTGGTGCTGTTTTTCTCTAGGTGTCGAAGGAAGCGGCGCTGTG
CCTCAAGTACAACTTCTCCGCGAACAGTGCCTTGGACCGCAACGAGGTGA
CGCTAGCGATCGACTACTACGATAAAGCTATCGCTACCGGCTACATGGAC
CAACAGGGGGTGCTGCTGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12951:5453..8124+

>mRNA_M-pyrifera_M_contig12951.5796.1 ID=mRNA_M-pyrifera_M_contig12951.5796.1|Name=mRNA_M-pyrifera_M_contig12951.5796.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig12951:5453..8124+ (Macrocystis pyrifera P11B4 male)
TTCGTGGGCCTCGCGCCGGAGGGGGAGGTGCTGGTTCAGGGGGTCAACTG
CCTCGGAAGTTCGTGGGCCTCGCGCCGGAGGGGGAGGTGCTGGTTCAGGG
GGTCAACTGCCTCGGAAGGTGCAACAAGGGACCCAACTTGAGGGTGCGCC
AGAAAGATGGGAGCTGGTTGGAGTTCAATCGCATCGACAGCGTGGAGAAG
GTGTACAAGATCCTCAGGGACTACCTGGGTGCCGATGTGCAACAAGGGAC
CCAACTTGAGGGTGCGCCAGAAAGATGGGAGCTGGTTGGAGTTCAATCGC
ATCGACAGCGTGGAGAAGGTGTACAAGATCCTCAGGGACTACCTGGGTGC
CGATGTGTCGAAGGAAGCGGCGCTGTGCCTCAAGTACAACTTCTCCGCGA
ACAGTGCCTTGGACCGCAACGAGGTGACGCTAGCGATCGACTACTACGAT
AAAGCTATCGCTACCGGCTACATGGACCAACAGGGGGTGCTGCTGGTGGT
GTCGAAGGAAGCGGCGCTGTGCCTCAAGTACAACTTCTCCGCGAACAGTG
CCTTGGACCGCAACGAGGTGACGCTAGCGATCGACTACTACGATAAAGCT
ATCGCTACCGGCTACATGGACCAACAGGGGGTGCTGCTGGTG
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