mRNA_M-pyrifera_M_contig12950.5795.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12950.5795.1
Unique NamemRNA_M-pyrifera_M_contig12950.5795.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig12950.5795.1 vs. uniprot
Match: A0A3G3BM28_SACJA (Vanadium-dependent iodine peroxidase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A3G3BM28_SACJA)

HSP 1 Score: 121 bits (303), Expect = 5.820e-30
Identity = 57/93 (61.29%), Postives = 68/93 (73.12%), Query Frame = 1
Query:    1 NDTLCREAYRAALILIEEGAISRPGFNGPYTETGRQVGFVNYGTSHIMRLVGTGELAQRASWYQKWNVHLFARPEV---RVHCITNSGREYRY 270
             DT+  EAYR+ALILIE+ AISR G NGPY   GRQ GFVNYG SH MRLVG+GEL+ R+SWYQKWNVHL+ARPE     +H + N   +  +
Sbjct:  325 TDTINTEAYRSALILIEQDAISRFGINGPYVADGRQSGFVNYGISHTMRLVGSGELSMRSSWYQKWNVHLYARPEAIGGTIHNVLNGDLDITF 417          
BLAST of mRNA_M-pyrifera_M_contig12950.5795.1 vs. uniprot
Match: B7ZGM6_9PHAE (Putative vanadium-dependent iodoperoxidase 3 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGM6_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 9.890e-30
Identity = 53/74 (71.62%), Postives = 63/74 (85.14%), Query Frame = 1
Query:    4 DTLCREAYRAALILIEEGAISRPGFNGPYTETGRQVGFVNYGTSHIMRLVGTGELAQRASWYQKWNVHLFARPE 225
            DT+  EAYRAALIL+E+GAIS PG NGPY  + RQ GFVNYG SH+MRLVGT EL+Q+++WYQKWNVH+F RPE
Sbjct:  333 DTVNTEAYRAALILLEQGAISGPGSNGPYAGSSRQAGFVNYGVSHLMRLVGTAELSQKSAWYQKWNVHMFVRPE 406          
BLAST of mRNA_M-pyrifera_M_contig12950.5795.1 vs. uniprot
Match: Q4LDE6_9PHAE (Vanadium-dependent iodoperoxidase 1 n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q4LDE6_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 3.010e-27
Identity = 52/82 (63.41%), Postives = 62/82 (75.61%), Query Frame = 1
Query:    1 NDTLCREAYRAALILIE-------EGAISRPGFNGPYTETGRQVGFVNYGTSHIMRLVGTGELAQRASWYQKWNVHLFARPE 225
             DT+  EAYRAALIL++         AIS PG NGPY ++ RQ GFVNYG SH+MRLVGT ELAQ+++WYQKWNVH+F RPE
Sbjct:  332 TDTVNTEAYRAALILLDPDQGADGRAAISAPGLNGPYADSSRQAGFVNYGVSHLMRLVGTAELAQKSAWYQKWNVHMFVRPE 413          
BLAST of mRNA_M-pyrifera_M_contig12950.5795.1 vs. uniprot
Match: O82433_FUCDI (Vanadium bromoperoxidase n=1 Tax=Fucus distichus TaxID=3012 RepID=O82433_FUCDI)

HSP 1 Score: 108 bits (269), Expect = 2.560e-25
Identity = 50/83 (60.24%), Postives = 60/83 (72.29%), Query Frame = 1
Query:    4 DTLCREAYRAALILIEEGAISRPGFNGPYTETGRQVGFVNYGTSHIMRLVGTGELAQRASWYQKWNVHLFARPEVRVHCITNS 252
            D +  EAYR +LIL+E GA SRPG NGP+ ++ RQ GFVN+GTSH  RL+G  ELAQRAS YQKW VH FARPE     + N+
Sbjct:  397 DNINTEAYRGSLILLELGAFSRPGINGPFIDSDRQAGFVNFGTSHYFRLIGAAELAQRASCYQKWQVHRFARPEALGGTLHNT 479          
BLAST of mRNA_M-pyrifera_M_contig12950.5795.1 vs. uniprot
Match: PRXV_ASCNO (Vanadium-dependent bromoperoxidase n=1 Tax=Ascophyllum nodosum TaxID=52969 RepID=PRXV_ASCNO)

HSP 1 Score: 100 bits (248), Expect = 1.610e-22
Identity = 45/75 (60.00%), Postives = 53/75 (70.67%), Query Frame = 1
Query:    1 NDTLCREAYRAALILIEEGAISRPGFNGPYTETGRQVGFVNYGTSHIMRLVGTGELAQRASWYQKWNVHLFARPE 225
             D +  EAYR ALIL+   A +R G NGP+ +  RQ GFVN+G SH  RL+G  ELAQR+SWYQKW VH FARPE
Sbjct:  277 TDNINTEAYRGALILLGLDAFNRAGVNGPFIDIDRQAGFVNFGISHYFRLIGAAELAQRSSWYQKWQVHRFARPE 351          
BLAST of mRNA_M-pyrifera_M_contig12950.5795.1 vs. uniprot
Match: UPI001EF0D60F (phosphoesterase n=1 Tax=Archangium violaceum TaxID=83451 RepID=UPI001EF0D60F)

HSP 1 Score: 53.9 bits (128), Expect = 2.970e-6
Identity = 33/95 (34.74%), Postives = 47/95 (49.47%), Query Frame = 1
Query:    1 NDTLCREAYRAALILIEEGAISRPGFN--GPY--TETGRQVGFVNYGTSHIMRLVGTGELAQRASWYQKWNVHLFARPEV---RVHCITNSGREY 264
             D +     +AA IL+   A    GF+   PY  + + RQ GF  +G SH+M L+G    ++  SW+QKW+V  + RPE    RVH        Y
Sbjct:  298 QDIITSSYIKAAFILLF--AFGAEGFDEANPYHPSRSRRQDGFSTFGLSHLMELIGKVHKSEHHSWFQKWHVQRYLRPEEGGGRVHNAKTGVASY 390          
BLAST of mRNA_M-pyrifera_M_contig12950.5795.1 vs. uniprot
Match: UPI001C401595 (hypothetical protein n=1 Tax=Anthocerotibacter panamensis TaxID=2857077 RepID=UPI001C401595)

HSP 1 Score: 51.6 bits (122), Expect = 1.590e-5
Identity = 33/84 (39.29%), Postives = 44/84 (52.38%), Query Frame = 1
Query:   31 AALILIEEGAISRPGFNGPYTETGR--QVGFVNYGTSHIMRLVG-TGELAQRASWYQKWNVHLFARPEV---RVHCITNSGREY 264
            A LIL+  G+ +    N PYT T    Q GF  +G  H + LV    +LA +A+W+QKW VH   RPE+   RVH +      Y
Sbjct:   86 ACLILLGYGSGAFDAGN-PYTATNSLTQQGFNTFGGPHPLNLVSKAADLALKAAWFQKWQVHRRIRPEMFGGRVHNVLTGAANY 168          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12950.5795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A3G3BM28_SACJA5.820e-3061.29Vanadium-dependent iodine peroxidase n=1 Tax=Sacch... [more]
B7ZGM6_9PHAE9.890e-3071.62Putative vanadium-dependent iodoperoxidase 3 n=1 T... [more]
Q4LDE6_9PHAE3.010e-2763.41Vanadium-dependent iodoperoxidase 1 n=1 Tax=Lamina... [more]
O82433_FUCDI2.560e-2560.24Vanadium bromoperoxidase n=1 Tax=Fucus distichus T... [more]
PRXV_ASCNO1.610e-2260.00Vanadium-dependent bromoperoxidase n=1 Tax=Ascophy... [more]
UPI001EF0D60F2.970e-634.74phosphoesterase n=1 Tax=Archangium violaceum TaxID... [more]
UPI001C4015951.590e-539.29hypothetical protein n=1 Tax=Anthocerotibacter pan... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12950contigM-pyrifera_M_contig12950:8689..8982 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.6
Seed ortholog evalue1.9e-09
Seed eggNOG ortholog2880.D8LTP5
Hectar predicted targeting categoryother localisation
EggNOG OGs2EKT6@1,2SQKZ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size294
Cds size294
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815803.282365-CDS-M-pyrifera_M_contig12950:8688..89821622815803.282365-CDS-M-pyrifera_M_contig12950:8688..8982Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12950 8689..8982 -
1692277577.2450936-CDS-M-pyrifera_M_contig12950:8688..89821692277577.2450936-CDS-M-pyrifera_M_contig12950:8688..8982Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12950 8689..8982 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12950.5795.1prot_M-pyrifera_M_contig12950.5795.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12950 8689..8982 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12950.5795.1

>prot_M-pyrifera_M_contig12950.5795.1 ID=prot_M-pyrifera_M_contig12950.5795.1|Name=mRNA_M-pyrifera_M_contig12950.5795.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=98bp
NDTLCREAYRAALILIEEGAISRPGFNGPYTETGRQVGFVNYGTSHIMRL
VGTGELAQRASWYQKWNVHLFARPEVRVHCITNSGREYRYILGCMLP*
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mRNA from alignment at M-pyrifera_M_contig12950:8689..8982-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12950.5795.1 ID=mRNA_M-pyrifera_M_contig12950.5795.1|Name=mRNA_M-pyrifera_M_contig12950.5795.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig12950:8689..8982- (Macrocystis pyrifera P11B4 male)
AACGACACCCTTTGCAGGGAGGCGTACCGAGCCGCCCTGATCCTTATCGA GGAAGGAGCTATCAGCCGTCCTGGTTTCAACGGTCCCTACACAGAAACCG GCCGCCAGGTCGGTTTCGTCAACTACGGTACATCCCACATCATGAGGCTT GTCGGAACCGGCGAGCTGGCTCAGAGGGCTTCATGGTACCAGAAGTGGAA CGTCCACTTGTTTGCCCGTCCGGAGGTGAGGGTTCACTGCATTACCAACA GTGGCCGTGAATACCGATATATATTAGGATGCATGCTACCGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12950:8689..8982-

>mRNA_M-pyrifera_M_contig12950.5795.1 ID=mRNA_M-pyrifera_M_contig12950.5795.1|Name=mRNA_M-pyrifera_M_contig12950.5795.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=588bp|location=Sequence derived from alignment at M-pyrifera_M_contig12950:8689..8982- (Macrocystis pyrifera P11B4 male)
AACGACACCCTTTGCAGGGAGGCGTACCGAGCCGCCCTGATCCTTATCGA
GGAAGGAGCTATCAGCCGTCCTGGTTTCAACGGTCCCTACACAGAAACCG
GCCGCCAGGTCGGTTTCGTCAACTACGGTACATCCCACATCATGAGGCTT
GTCGGAACCGGCGAGCTGGCTCAGAGGGCTTCATGGTACCAGAAGTGGAA
CGTCCACTTGTTTGCCCGTCCGGAGGTGAGGGTTCACTGCATTACCAACA
GTGGCCGTGAATACCGATATATATTAGGATGCATGCTACCGTAGAACGAC
ACCCTTTGCAGGGAGGCGTACCGAGCCGCCCTGATCCTTATCGAGGAAGG
AGCTATCAGCCGTCCTGGTTTCAACGGTCCCTACACAGAAACCGGCCGCC
AGGTCGGTTTCGTCAACTACGGTACATCCCACATCATGAGGCTTGTCGGA
ACCGGCGAGCTGGCTCAGAGGGCTTCATGGTACCAGAAGTGGAACGTCCA
CTTGTTTGCCCGTCCGGAGGTGAGGGTTCACTGCATTACCAACAGTGGCC
GTGAATACCGATATATATTAGGATGCATGCTACCGTAG
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