mRNA_M-pyrifera_M_contig128670.5760.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128670.5760.1
Unique NamemRNA_M-pyrifera_M_contig128670.5760.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig128670.5760.1 vs. uniprot
Match: UPI0015941B60 (DUF423 domain-containing protein n=1 Tax=Parasphingorhabdus flavimaris TaxID=266812 RepID=UPI0015941B60)

HSP 1 Score: 87.8 bits (216), Expect = 2.040e-21
Identity = 42/45 (93.33%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    1 GSVVFALTLYAMAFGAPRWLGAVTPIGGTLLIGGWLWAASIFYRG 135
            GS VFALTLYAMAFGAPRWLGAVTPIGGTLLIGGWLWAA I YRG
Sbjct:   64 GSAVFALTLYAMAFGAPRWLGAVTPIGGTLLIGGWLWAAWIHYRG 108
[Close]
BLAST of mRNA_M-pyrifera_M_contig128670.5760.1 vs. uniprot
Match: A0A2M7LCC7_9SPHN (DUF423 domain-containing protein n=1 Tax=Sphingomonadales bacterium CG_4_10_14_3_um_filter_58_15 TaxID=1974093 RepID=A0A2M7LCC7_9SPHN)

HSP 1 Score: 85.5 bits (210), Expect = 1.670e-20
Identity = 39/45 (86.67%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    1 GSVVFALTLYAMAFGAPRWLGAVTPIGGTLLIGGWLWAASIFYRG 135
            GSV+FALTLYAMA GAPRWLGA+TPIGGTLLIGGWLWA  I+YRG
Sbjct:   64 GSVLFALTLYAMALGAPRWLGAITPIGGTLLIGGWLWAGWIYYRG 108
[Close]
BLAST of mRNA_M-pyrifera_M_contig128670.5760.1 vs. uniprot
Match: A0A220W7P3_9SPHN (Membrane protein n=2 Tax=Sphingorhabdus sp. SMR4y TaxID=2584094 RepID=A0A220W7P3_9SPHN)

HSP 1 Score: 82.4 bits (202), Expect = 2.820e-19
Identity = 37/45 (82.22%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    1 GSVVFALTLYAMAFGAPRWLGAVTPIGGTLLIGGWLWAASIFYRG 135
            GSV+FALTLYAMA GAP+WLGA+TPIGGTLLIGGWLWA  I++RG
Sbjct:   65 GSVLFALTLYAMALGAPQWLGAITPIGGTLLIGGWLWAGWIYFRG 109
[Close]
BLAST of mRNA_M-pyrifera_M_contig128670.5760.1 vs. uniprot
Match: UPI00053BF630 (DUF423 domain-containing protein n=2 Tax=Sphingomonadaceae TaxID=41297 RepID=UPI00053BF630)

HSP 1 Score: 80.1 bits (196), Expect = 2.240e-18
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:    1 GSVVFALTLYAMAFGAPRWLGAVTPIGGTLLIGGWLWAASIFYR 132
            GS +FALTLYAMA GAPRWLGAVTPIGGTLLIGGWLWAA I+ +
Sbjct:   64 GSAIFALTLYAMALGAPRWLGAVTPIGGTLLIGGWLWAAWIYTK 107
[Close]
BLAST of mRNA_M-pyrifera_M_contig128670.5760.1 vs. uniprot
Match: A0A0W1GJU7_9SPHN (Uncharacterized protein n=1 Tax=Sphingopyxis sp. H071 TaxID=1759078 RepID=A0A0W1GJU7_9SPHN)

HSP 1 Score: 78.6 bits (192), Expect = 9.090e-18
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:    1 GSVVFALTLYAMAFGAPRWLGAVTPIGGTLLIGGWLWAASIFYRG 135
            G  +FA+TLYAMA GAP+W GAVTPIGGTLLIGGWLWAA +++RG
Sbjct:   64 GGAIFAVTLYAMALGAPKWFGAVTPIGGTLLIGGWLWAAWLYWRG 108
[Close]
BLAST of mRNA_M-pyrifera_M_contig128670.5760.1 vs. uniprot
Match: A0A7W9ETB5_9SPHN (Uncharacterized membrane protein YgdD (TMEM256/DUF423 family) n=1 Tax=Sphingopyxis panaciterrulae TaxID=462372 RepID=A0A7W9ETB5_9SPHN)

HSP 1 Score: 78.2 bits (191), Expect = 1.290e-17
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    1 GSVVFALTLYAMAFGAPRWLGAVTPIGGTLLIGGWLWAASIFYRG 135
            G  +FALTLYAMA G PRWLGAVTPIGGTL+I GWLWAA +F+RG
Sbjct:   64 GGALFALTLYAMALGGPRWLGAVTPIGGTLMIAGWLWAAWLFWRG 108
[Close]
BLAST of mRNA_M-pyrifera_M_contig128670.5760.1 vs. uniprot
Match: A0A2G2D1M5_9SPHN (Uncharacterized protein n=1 Tax=Sphingopyxis sp. TaxID=1908224 RepID=A0A2G2D1M5_9SPHN)

HSP 1 Score: 77.8 bits (190), Expect = 1.830e-17
Identity = 36/44 (81.82%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    1 GSVVFALTLYAMAFGAPRWLGAVTPIGGTLLIGGWLWAASIFYR 132
            GS  FALTLYAMAFGAPRWLGAVTPIGGT+LI GWLW A I+ R
Sbjct:   64 GSAFFALTLYAMAFGAPRWLGAVTPIGGTMLIAGWLWTAWIYLR 107
[Close]
BLAST of mRNA_M-pyrifera_M_contig128670.5760.1 vs. uniprot
Match: A0A246JTH9_9SPHN (Uncharacterized protein n=1 Tax=Sphingopyxis witflariensis TaxID=173675 RepID=A0A246JTH9_9SPHN)

HSP 1 Score: 77.8 bits (190), Expect = 1.830e-17
Identity = 36/45 (80.00%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:    1 GSVVFALTLYAMAFGAPRWLGAVTPIGGTLLIGGWLWAASIFYRG 135
            GS++FA TLYAMA GAPRWLGAVTPIGGT LI GWLWAA I++RG
Sbjct:   64 GSILFAATLYAMALGAPRWLGAVTPIGGTFLIIGWLWAAWIYWRG 108
[Close]
BLAST of mRNA_M-pyrifera_M_contig128670.5760.1 vs. uniprot
Match: A0A270BDY1_9SPHN (Uncharacterized protein n=1 Tax=Sphingopyxis sp. GW247-27LB TaxID=2012632 RepID=A0A270BDY1_9SPHN)

HSP 1 Score: 77.4 bits (189), Expect = 2.600e-17
Identity = 35/44 (79.55%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:    1 GSVVFALTLYAMAFGAPRWLGAVTPIGGTLLIGGWLWAASIFYR 132
            GS +FA+TLYAMA G PRWLGAVTPIGGTLLI GWLWAA +F+R
Sbjct:   64 GSALFAVTLYAMALGGPRWLGAVTPIGGTLLIAGWLWAAWLFWR 107
[Close]
BLAST of mRNA_M-pyrifera_M_contig128670.5760.1 vs. uniprot
Match: A0A2V3UXK1_9SPHN (Uncharacterized membrane protein YgdD (TMEM256/DUF423 family) n=4 Tax=Sphingomonadales TaxID=204457 RepID=A0A2V3UXK1_9SPHN)

HSP 1 Score: 77.4 bits (189), Expect = 2.670e-17
Identity = 35/44 (79.55%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    1 GSVVFALTLYAMAFGAPRWLGAVTPIGGTLLIGGWLWAASIFYR 132
            G  +FALTLYAMA GAPRWLGAVTPIGGTLLIGGWLWA  I+ +
Sbjct:   65 GGAIFALTLYAMALGAPRWLGAVTPIGGTLLIGGWLWAGWIYLK 108
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128670.5760.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0015941B602.040e-2193.33DUF423 domain-containing protein n=1 Tax=Parasphin... [more]
A0A2M7LCC7_9SPHN1.670e-2086.67DUF423 domain-containing protein n=1 Tax=Sphingomo... [more]
A0A220W7P3_9SPHN2.820e-1982.22Membrane protein n=2 Tax=Sphingorhabdus sp. SMR4y ... [more]
UPI00053BF6302.240e-1884.09DUF423 domain-containing protein n=2 Tax=Sphingomo... [more]
A0A0W1GJU7_9SPHN9.090e-1875.56Uncharacterized protein n=1 Tax=Sphingopyxis sp. H... [more]
A0A7W9ETB5_9SPHN1.290e-1777.78Uncharacterized membrane protein YgdD (TMEM256/DUF... [more]
A0A2G2D1M5_9SPHN1.830e-1781.82Uncharacterized protein n=1 Tax=Sphingopyxis sp. T... [more]
A0A246JTH9_9SPHN1.830e-1780.00Uncharacterized protein n=1 Tax=Sphingopyxis witfl... [more]
A0A270BDY1_9SPHN2.600e-1779.55Uncharacterized protein n=1 Tax=Sphingopyxis sp. G... [more]
A0A2V3UXK1_9SPHN2.670e-1779.55Uncharacterized membrane protein YgdD (TMEM256/DUF... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128670contigM-pyrifera_M_contig128670:361..498 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score82.4
Seed ortholog evalue6e-14
Seed eggNOG ortholog1545915.JROG01000004_gene1950
Preferred nameygdD
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.small membrane protein
EggNOG OGs1PX6Z@1224,2K69P@204457,2UDAX@28211,COG2363@1,COG2363@2
COG Functional cat.S
Best tax levelSphingomonadales
Best eggNOG OGNA|NA|NA
Exons1
Model size138
Cds size138
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815799.7310965-CDS-M-pyrifera_M_contig128670:360..4981622815799.7310965-CDS-M-pyrifera_M_contig128670:360..498Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128670 361..498 -
1692277574.9848013-CDS-M-pyrifera_M_contig128670:360..4981692277574.9848013-CDS-M-pyrifera_M_contig128670:360..498Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128670 361..498 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128670.5760.1prot_M-pyrifera_M_contig128670.5760.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128670 361..498 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128670.5760.1

>prot_M-pyrifera_M_contig128670.5760.1 ID=prot_M-pyrifera_M_contig128670.5760.1|Name=mRNA_M-pyrifera_M_contig128670.5760.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=46bp
GSVVFALTLYAMAFGAPRWLGAVTPIGGTLLIGGWLWAASIFYRG*
back to top

mRNA from alignment at M-pyrifera_M_contig128670:361..498-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128670.5760.1 ID=mRNA_M-pyrifera_M_contig128670.5760.1|Name=mRNA_M-pyrifera_M_contig128670.5760.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=138bp|location=Sequence derived from alignment at M-pyrifera_M_contig128670:361..498- (Macrocystis pyrifera P11B4 male)
GGATCTGTCGTTTTCGCCCTTACATTATACGCGATGGCATTTGGCGCGCC
ACGATGGCTGGGCGCTGTCACGCCAATAGGAGGGACCCTGCTGATTGGCG
GCTGGCTATGGGCCGCATCGATATTTTACCGCGGTTAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig128670:361..498-

>mRNA_M-pyrifera_M_contig128670.5760.1 ID=mRNA_M-pyrifera_M_contig128670.5760.1|Name=mRNA_M-pyrifera_M_contig128670.5760.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=276bp|location=Sequence derived from alignment at M-pyrifera_M_contig128670:361..498- (Macrocystis pyrifera P11B4 male)
GGATCTGTCGTTTTCGCCCTTACATTATACGCGATGGCATTTGGCGCGCC
ACGATGGCTGGGCGCTGTCACGCCAATAGGAGGGACCCTGCTGATTGGCG
GCTGGCTATGGGCCGCATCGATATTTTACCGCGGTTAGGGATCTGTCGTT
TTCGCCCTTACATTATACGCGATGGCATTTGGCGCGCCACGATGGCTGGG
CGCTGTCACGCCAATAGGAGGGACCCTGCTGATTGGCGGCTGGCTATGGG
CCGCATCGATATTTTACCGCGGTTAG
back to top