mRNA_M-pyrifera_M_contig12862.5746.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12862.5746.1
Unique NamemRNA_M-pyrifera_M_contig12862.5746.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig12862.5746.1 vs. uniprot
Match: D7FY25_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY25_ECTSI)

HSP 1 Score: 414 bits (1065), Expect = 4.710e-142
Identity = 201/255 (78.82%), Postives = 221/255 (86.67%), Query Frame = 1 
Query:    1 MREVALLTAAGGDGLATVVDVLTGTQITSLKNCSAQPGSTALIAGDFVASAQVKGTAVHFWAWGSEQPRLKCHAPEKLGPLAVSDDGWLCAGGGLSGRVYLWEVASGALLHAWDAHYKAVSALAFSPDGCFLYSGGEDAMVSAWNMLAAVDPEGGAGFKGGXXXXXXXXXXXRHSSFPTTWTASQHSLPVTGIFAAKGGGRVYTCSLDRTARVWDSGSGRLLLSATCPVFLRTVTADPAETFLFAAGGGGVIYQV 765
            MREVALLT++ GDGLATVVDVLTGTQ++SLK+CS+QPGSTALIAGDFV SAQVKGTAVHFWAWG+EQPRLKCHAPEKLGPLAV+ DGWLCAGGG+SGRVYLWEV+SG LL AWDAHYKAVSALAFSPDGCFLYSGGEDAMVS+WNMLAAVDP+GG  FKGG             SS P TWT+S+HSLPVT + AAK GGRVY+CSLDRTA+ WDS SGRLLLS TCP FL+ V ADPAE FLFA GGGG I+Q+
Sbjct:    1 MREVALLTSSAGDGLATVVDVLTGTQLSSLKHCSSQPGSTALIAGDFVVSAQVKGTAVHFWAWGTEQPRLKCHAPEKLGPLAVTGDGWLCAGGGVSGRVYLWEVSSGTLLRAWDAHYKAVSALAFSPDGCFLYSGGEDAMVSSWNMLAAVDPDGGEAFKGGGGGGK--------SSLPATWTSSEHSLPVTCLHAAKAGGRVYSCSLDRTAKAWDSCSGRLLLSVTCPAFLKAVAADPAEAFLFAGGGGGTIFQL 247
[Close]
BLAST of mRNA_M-pyrifera_M_contig12862.5746.1 vs. uniprot
Match: A0A6H5JBW7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBW7_9PHAE)

HSP 1 Score: 322 bits (826), Expect = 1.270e-105
Identity = 176/255 (69.02%), Postives = 196/255 (76.86%), Query Frame = 1 
Query:    1 MREVALLTAAGGDGLATVVDVLTGTQITSLKNCSAQPGSTALIAGDFVASAQVKGTAVHFWAWGSEQPRLKCHAPEKLGPLAVSDDGWLCAGGGLSGRVYLWEVASGALLHAWDAHYKAVSALAFSPDGCFLYSGGEDAMVSAWNMLAAVDPEGGAGFKGGXXXXXXXXXXXRHSSFPTTWTASQHSLPVTGIFAAKGGGRVYTCSLDRTARVWDSGSGRLLLSATCPVFLRTVTADPAETFLFAAGGGGVIYQV 765
            MREVALLT++ GDGLATVVDVLTGTQ++SLK+CS+QPGSTALIAGDFV SAQVKGTAVHFWAWG+EQPRLKCHAPEKLGPLAV+            GR                   KAVSALAFSP+G FL+SGGEDAMVS+WNMLAAVDP+GG  FKG     XXXXXXX  SS P TWT+S+HSLPVT + AAK GGRVY+CSLDRTA+ WD+ SGRLLLS TCP FL+ V  DPAE FLF  GGGG I+QV
Sbjct:    1 MREVALLTSSAGDGLATVVDVLTGTQLSSLKHCSSQPGSTALIAGDFVVSAQVKGTAVHFWAWGTEQPRLKCHAPEKLGPLAVT------------GR----------------KRCKAVSALAFSPEGYFLFSGGEDAMVSSWNMLAAVDPDGGEAFKG-----XXXXXXXXKSSLPATWTSSEHSLPVTCLHAAKAGGRVYSCSLDRTAKAWDACSGRLLLSVTCPAFLKAVATDPAEAFLFTGGGGGTIFQV 222
[Close]
BLAST of mRNA_M-pyrifera_M_contig12862.5746.1 vs. uniprot
Match: A0A024TIW6_9STRA (Uncharacterized protein n=13 Tax=Aphanomyces TaxID=100860 RepID=A0A024TIW6_9STRA)

HSP 1 Score: 182 bits (462), Expect = 3.540e-52
Identity = 105/258 (40.70%), Postives = 136/258 (52.71%), Query Frame = 1 
Query:    1 MREVALLTAAGGDGLATVVDVLTGTQITSLKNCS-AQPGSTALIAGDFVASAQVKGTAVHFWAWGSEQPRLKCHAPEKLGPLAVSDDGWLCAGGGLSGRVYLWEVASGALLHAWDAHYKAVSALAFSPDGCFLYSGGEDAMVSAWNMLAAVDPEGGAGFKGGXXXXXXXXXXXRHSSFPTTWTASQHSLPVTGIFAAKGG--GRVYTCSLDRTARVWDSGSGRLLLSATCPVFLRTVTADPAETFLFAAGGGGVIYQV 765
            M +  L+ A+  DG   VVD + G Q+   K  S ++ G  A+     + + Q    A+H   WG + P  KCH  E +GP+  + +G  C  GG SG++YLW VASGALLH WDAHYKAVSAL  + D  F+ SGGEDA+V  W +L  +D                       SS    +T + H LP+T I    GG  GRV+T SLDRT +V+D  SG  L+S TCP F+    AD  E  LF   G G IY V
Sbjct:    1 MEDHVLVLASSKDGNIYVVDPMCGAQLFIFKGSSCSRHGLVAIPRTHHLIALQPGKLAMHMHMWGKDVPHFKCHVTEHMGPMVTTSEGNYCIAGGASGKMYLWCVASGALLHVWDAHYKAVSALRLTSDDAFVVSGGEDAVVHVWRLLDLLDASS--------------TDSALQSSAAPVYTWTDHVLPITSIHCGLGGVNGRVFTSSLDRTTKVYDIPSGSCLVSITCPSFINVCVADAMENRLFLGAGDGRIYVV 244
[Close]
BLAST of mRNA_M-pyrifera_M_contig12862.5746.1 vs. uniprot
Match: A0A067CCG4_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CCG4_SAPPC)

HSP 1 Score: 181 bits (458), Expect = 1.430e-51
Identity = 106/257 (41.25%), Postives = 136/257 (52.92%), Query Frame = 1 
Query:    1 MREVALLTAAGGDGLATVVDVLTGTQITSLKNCSAQPGSTALI--AGDFVASAQVKGTAVHFWAWGSEQPRLKCHAPEKLGPLAVSDDGWLCAGGGLSGRVYLWEVASGALLHAWDAHYKAVSALAFSPDGCFLYSGGEDAMVSAWNMLAAVDPEGGAGFKGGXXXXXXXXXXXRHSSFPTTWTASQHSLPVTGIFAAKGGGRVYTCSLDRTARVWDSGSGRLLLSATCPVFLRTVTADPAETFLFAAGGGGVIYQV 765
            M +  L+  +  DG   VVD    +Q+   K  S      A++   G  + + Q    A+H   WG + P LKCH  E +GPL  + DG  C  GG SG++Y+W VA+GALLH WD HYKAVSALA +PD  FL SGGEDA+V  W +L  +D    A  +G                   TWT   H LP+T +    GG R++T SLDRTA+VWD   GR L+S TCP ++  V  D  E  LF   G G IY V
Sbjct:    1 MEDQVLVLGSSKDGNVYVVDPSCSSQLFLFKGSSCARHGLAIVPRTGHLI-TIQPGKLALHMHMWGKDVPTLKCHVTEPMGPLIATRDGNFCIAGGASGKIYVWCVATGALLHVWDGHYKAVSALALTPDDAFLVSGGEDAVVHVWRLLDILD----ASHEGSTLNQGLSPLH--------TWT--DHVLPITHVHCGFGG-RIFTASLDRTAKVWDLVHGRALVSVTCPSYVNVVVPDAMEHRLFLGAGDGRIYVV 241
[Close]
BLAST of mRNA_M-pyrifera_M_contig12862.5746.1 vs. uniprot
Match: A0A1V9ZLK9_9STRA (WD domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZLK9_9STRA)

HSP 1 Score: 177 bits (449), Expect = 3.060e-50
Identity = 105/257 (40.86%), Postives = 133/257 (51.75%), Query Frame = 1 
Query:    1 MREVALLTAAGGDGLATVVDVLTGTQITSLKNCSAQPGSTALI--AGDFVASAQVKGTAVHFWAWGSEQPRLKCHAPEKLGPLAVSDDGWLCAGGGLSGRVYLWEVASGALLHAWDAHYKAVSALAFSPDGCFLYSGGEDAMVSAWNMLAAVDPEGGAGFKGGXXXXXXXXXXXRHSSFPTTWTASQHSLPVTGIFAAKGGGRVYTCSLDRTARVWDSGSGRLLLSATCPVFLRTVTADPAETFLFAAGGGGVIYQV 765
            M +  L+  +  DG   VVD    +Q+   K  +      A++   G  +A    K  A+H   WG + P LKCH  E +GPL  + DG  C  GG SG++Y+W VASGALLH WD HYKAVSAL+ +PD  FL SGGEDA+V  W +L  +    G                  H     TWT   H LP+T +    GG RV+T SLDRTA++WD  +G  L+S TCP FL     D  E  LF   G G IY V
Sbjct:    1 MEDQVLVVGSSKDGNVYVVDPSCSSQLFVFKGSACARHGLAVVPRTGHLIALQPGK-LALHMHMWGKDVPTLKCHVTEPMGPLVTTRDGNFCLAGGASGKIYVWCVASGALLHVWDGHYKAVSALSMTPDDAFLVSGGEDAVVHVWRLLDILAASDGTS-------SLTQGLAPLH-----TWT--DHVLPITHVHCGFGG-RVFTASLDRTAKIWDLYAGSALVSVTCPSFLNVCVPDAMEHRLFLGAGDGRIYVV 241
[Close]
BLAST of mRNA_M-pyrifera_M_contig12862.5746.1 vs. uniprot
Match: A0A6G0WUQ6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WUQ6_9STRA)

HSP 1 Score: 173 bits (439), Expect = 9.620e-49
Identity = 104/259 (40.15%), Postives = 134/259 (51.74%), Query Frame = 1 
Query:    1 MREVALLTAAGGDGLATVVDVLTGTQITSLKNCS-AQPGSTALIAGDFVASAQVKGTAVHFWAWGSEQPRLKCHAPEKLGPLAVSDDGWLCAGGGLSGRVYLWEVASGALLHAWDAHYKAVSALAFSPDGCFLYSGGEDAMVSAWNMLAAVDPEGGAGFKGGXXXXXXXXXXXRHSSFPT-TWTASQHSLPVTGIFAAKGG--GRVYTCSLDRTARVWDSGSGRLLLSATCPVFLRTVTADPAETFLFAAGGGGVIYQV 765
            M ++ +   +  DG   VVD   G Q+   K  S ++ G  A+     +   Q    A+H   WG + P  KCH  E LGP+  + DG  C  GG SG++YLW VA+GALLH WDAHYKAVSAL+ + D  F+ SGG+DA+V  W +L  +D                     R  + P  TWT   H LP+T I    GG  GRV+T SLDRT + +D  +G  L S TCP F+  V AD  E  LF   G G IY V
Sbjct:    1 MEDLVVTLGSTKDGNIYVVDPSCGAQLFVFKGSSCSRHGLVAVPRTHQLIVIQPGKLAMHMHTWGKDVPLFKCHVTEPLGPITTTSDGNFCLAGGASGKMYLWCVATGALLHVWDAHYKAVSALSMTTDDAFVISGGDDAVVHVWRLLDLLDASS-------------PDSVLRTGAVPVHTWT--DHVLPITSIHCGHGGYLGRVFTSSLDRTTKFYDIPTGACLASITCPSFVNVVVADAMEHRLFLGAGDGRIYVV 244
[Close]
BLAST of mRNA_M-pyrifera_M_contig12862.5746.1 vs. uniprot
Match: A0A1V9ZVM6_9STRA (WD domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZVM6_9STRA)

HSP 1 Score: 172 bits (437), Expect = 2.050e-48
Identity = 101/256 (39.45%), Postives = 133/256 (51.95%), Query Frame = 1 
Query:    1 MREVALLTAAGGDGLATVVDVLTGTQITSLKNCSA-QPGSTALIAGDFVASAQVKGTAVHFWAWGSEQPRLKCHAPEKLGPLAVSDDGWLCAGGGLSGRVYLWEVASGALLHAWDAHYKAVSALAFSPDGCFLYSGGEDAMVSAWNMLAAVDPEGGAGFKGGXXXXXXXXXXXRHSSFPTTWTASQHSLPVTGIFAAKGGGRVYTCSLDRTARVWDSGSGRLLLSATCPVFLRTVTADPAETFLFAAGGGGVIYQV 765
            M +  L+  +  DG   VVD    +Q+   K  S  + G   +     +  AQ    A+H   WG + P  KCH  E +GPL  + DG  C  GG SG++Y+W VA+GALLH WDAHYKAVSAL+ +PD  FL SGGEDA+V  W +L  +D    +                +  S   TWT   H LP+T I    GG RV+T SLDRT ++WD  +G  ++S TCP ++     D  E  LF   G G IY V
Sbjct:    4 MEDQVLVLGSSKDGNVYVVDPSCSSQLFVFKGSSVTRHGLCVVPRTGHLIGAQPGKLALHMHLWGKDVPTYKCHVTEPMGPLIATRDGNFCLAGGASGKIYVWCVATGALLHVWDAHYKAVSALSLTPDNAFLVSGGEDAVVHVWRLLDILDASNQSS------------ALNQGLSPLHTWT--DHVLPITHIHCGFGG-RVFTSSLDRTTKIWDLFTGHSMVSITCPSYVNVCVPDAMEHRLFLGAGDGRIYVV 244
[Close]
BLAST of mRNA_M-pyrifera_M_contig12862.5746.1 vs. uniprot
Match: A0A485L1F3_9STRA (Aste57867_14421 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L1F3_9STRA)

HSP 1 Score: 172 bits (435), Expect = 3.690e-48
Identity = 100/259 (38.61%), Postives = 136/259 (52.51%), Query Frame = 1 
Query:    1 MREVALLTAAGGDGLATVVDVLTGTQITSLKNCSA-QPGSTALIAGDFVASAQVKGTAVHFWAWGSEQPRLKCHAPEKLGPLAVSDDGWLCAGGGLSGRVYLWEVASGALLHAWDAHYKAVSALAFSPDGCFLYSGGEDAMVSAWNMLAAVDPEGGAGFKGGXXXXXXXXXXXRHSSFPT-TWTASQHSLPVTGIFAAKGG--GRVYTCSLDRTARVWDSGSGRLLLSATCPVFLRTVTADPAETFLFAAGGGGVIYQV 765
            M +  L+  +  DG   VVD  +G Q+   K  +  + G  A+     + + Q    A+H  +WG + P  KCH  E +GP+  + DG  C  GG SG++Y+W VA+GALLH WDAHYKAVSAL  + D  F+ SGG+DA+V  W +L  +D                     +  + P  TWT   H LP+T I    GG  GRV+T SLDRT +V+D  +G  ++S TCP F+    AD  E  LF   G G IY V
Sbjct:    1 MDDHVLVLGSSKDGNIYVVDPNSGAQLFIFKGSACTRHGLVAVPRTHHLIALQPGKLAMHMHSWGKDVPHFKCHVTEPMGPMVTTADGNFCIAGGSSGKMYIWCVATGALLHVWDAHYKAVSALRLTSDDAFIVSGGDDAVVHVWRLLDLLDASSS-------------DSALQSGAVPLHTWT--DHVLPITSIHCGLGGLNGRVFTSSLDRTVKVYDLATGANVVSITCPSFVNVCAADSMENRLFLGAGDGQIYTV 244
[Close]
BLAST of mRNA_M-pyrifera_M_contig12862.5746.1 vs. uniprot
Match: A9RNR9_PHYPA (Predicted protein (Fragment) n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9RNR9_PHYPA)

HSP 1 Score: 167 bits (422), Expect = 4.170e-47
Identity = 95/254 (37.40%), Postives = 131/254 (51.57%), Query Frame = 1 
Query:   28 AGGDGLATVVDVLTGTQITSLKNCSAQPGSTALIAGDFVASAQVK-------GTAVHFWAWGSEQPRLKCHAPEKLGPLAVSDDGWLCAGGGLSGRVYLWEVASGALLHAWDAHYKAVSALAFSPDGCFLYSGGEDAMVSAWNMLAAVDP-EGGAGFKGGXXXXXXXXXXXRHSSFPTTWTASQHSLPVTGIFAAKGGGR--VYTCSLDRTARVWDSGSGRLLLSATCPVFLRTVTADPAETFLFAAGGGGVIY 759
            +G D   TV D+ +G  ++ L++C++   + A +   F+A+AQV        G A++FWAW   Q   K +  E +GPLA + DG   AGGG SGR+Y WEVA+G LL  W  HYK VS L FS D   L SG +D +V+ W ++  +D  E G G  G                    +  S H+LPVTG+ +  GG    V +CSLD T ++W    G LL S   P  L  +  DP E  L+A G  G I+
Sbjct:   12 SGADAGVTVWDLHSGLVLSHLRSCASPRNALAPVGSHFLAAAQVPKPSGGAGGGAIYFWAWHKSQVAFKSYPVEPIGPLACTSDGAYLAGGGASGRIYFWEVATGRLLRLWSGHYKNVSCLVFSDDDSLLISGADDGLVNVWPLIRVLDMGEDGQGADG---------------QVAAMYGWSDHTLPVTGLVSGSGGSSAIVVSCSLDHTCKIWSLALGTLLRSIVFPTALNAIVLDPGEYALYAGGADGRIF 250
[Close]
BLAST of mRNA_M-pyrifera_M_contig12862.5746.1 vs. uniprot
Match: A0A8J9WRK7_9CHLO (WD repeat-containing protein 18 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WRK7_9CHLO)

HSP 1 Score: 171 bits (434), Expect = 7.110e-47
Identity = 101/243 (41.56%), Postives = 136/243 (55.97%), Query Frame = 1 
Query:   49 TVVDVLTGTQITSLK-NCSAQPGSTALIAGDFVASAQVKGTAVHFWAWGSEQPRLKCHAPEKLGPLAVSDDGWLCAGGGLSGRVYLWEVASGALLHAWDAHYKAVSALAFSPDGCFLYSGGEDAMVSAWNMLAAVD--PEGGAGFKGGXXXXXXXXXXXRHSSFPTTWTASQHSLPVTGIFAAKGGGR-VYTCSLDRTARVWDSGSGRLLLSATCPVFLRTVTADPAETFLFAAGGGGVIYQV 765
            T  DV TGT + + K NC++Q  +  LI  D+ A AQ    ++HFW W  +Q   + +A E +  L  S +G  CAGGG SG +YLWEV SG LL +W AHYKAV+ALAF+ DG  L S GED +  AW ++  +D  PE GA  +G                 PT  + S+H+LP+T ++   G    V T SLDR+ + W    G LL S T PV L +V+ DPAE  L+  G  G I++V
Sbjct:   20 TTWDVHTGTHLATFKDNCTSQ-NALCLIGRDYFAGAQHPKGSLHFWTWHKDQVLQRSYAVEPIVALVASLNGVHCAGGGQSGTIYLWEVPSGRLLRSWPAHYKAVTALAFTDDGAVLVSAGEDTVACAWLLMDVLDASPEQGASMQGP----------------PTFQSWSEHTLPITSLYCGIGANPIVITASLDRSCKTWSLAQGNLLRSITFPVSLHSVSMDPAEHALYLGGADGRIFEV 245
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12862.5746.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FY25_ECTSI4.710e-14278.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBW7_9PHAE1.270e-10569.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A024TIW6_9STRA3.540e-5240.70Uncharacterized protein n=13 Tax=Aphanomyces TaxID... [more]
A0A067CCG4_SAPPC1.430e-5141.25Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A1V9ZLK9_9STRA3.060e-5040.86WD domain-containing protein n=1 Tax=Achlya hypogy... [more]
A0A6G0WUQ6_9STRA9.620e-4940.15Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A1V9ZVM6_9STRA2.050e-4839.45WD domain-containing protein n=1 Tax=Thraustotheca... [more]
A0A485L1F3_9STRA3.690e-4838.61Aste57867_14421 protein n=1 Tax=Aphanomyces stella... [more]
A9RNR9_PHYPA4.170e-4737.40Predicted protein (Fragment) n=1 Tax=Physcomitrium... [more]
A0A8J9WRK7_9CHLO7.110e-4741.56WD repeat-containing protein 18 n=1 Tax=Coccomyxa ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12862contigM-pyrifera_M_contig12862:2944..9011 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score418.7
Seed ortholog evalue2e-114
Seed eggNOG ortholog2880.D7FY25
Preferred nameWDR18
KEGG koko:K14829,ko:K21412
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000027,GO:0000151,GO:0000228,GO:0000785,GO:0000790,GO:0000792,GO:0003006,GO:0003674,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005656,GO:0005694,GO:0005720,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006267,GO:0006275,GO:0006325,GO:0006342,GO:0006355,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007275,GO:0007276,GO:0007281,GO:0007368,GO:0007389,GO:0007548,GO:0008150,GO:0008152,GO:0008406,GO:0009058,GO:0009059,GO:0009799,GO:0009855,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016072,GO:0016458,GO:0019219,GO:0019222,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030154,GO:0030174,GO:0030702,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031461,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0032993,GO:0033260,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0036387,GO:0036388,GO:0040029,GO:0042254,GO:0042255,GO:0042273,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044703,GO:0044786,GO:0045137,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048468,GO:0048509,GO:0048513,GO:0048519,GO:0048523,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0051052,GO:0051093,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051704,GO:0060255,GO:0061458,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070121,GO:0070925,GO:0071704,GO:0071824,GO:0071826,GO:0071840,GO:0080008,GO:0080090,GO:0090304,GO:0090329,GO:0097344,GO:1901360,GO:1901576,GO:1902183,GO:1902184,GO:1902299,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1990234,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.rRNA processing
EggNOG OGsCOG2319@1,KOG0646@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009,ko03036
Exons5
Model size765
Cds size765
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12862.5746.1prot_M-pyrifera_M_contig12862.5746.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12862 2944..9011 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815799.000443-CDS-M-pyrifera_M_contig12862:2943..30991622815799.000443-CDS-M-pyrifera_M_contig12862:2943..3099Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12862 2944..3099 +
1692277574.6446762-CDS-M-pyrifera_M_contig12862:2943..30991692277574.6446762-CDS-M-pyrifera_M_contig12862:2943..3099Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12862 2944..3099 +
1622815799.015974-CDS-M-pyrifera_M_contig12862:5561..56581622815799.015974-CDS-M-pyrifera_M_contig12862:5561..5658Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12862 5562..5658 +
1692277574.654866-CDS-M-pyrifera_M_contig12862:5561..56581692277574.654866-CDS-M-pyrifera_M_contig12862:5561..5658Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12862 5562..5658 +
1622815799.027024-CDS-M-pyrifera_M_contig12862:6396..64971622815799.027024-CDS-M-pyrifera_M_contig12862:6396..6497Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12862 6397..6497 +
1692277574.6630533-CDS-M-pyrifera_M_contig12862:6396..64971692277574.6630533-CDS-M-pyrifera_M_contig12862:6396..6497Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12862 6397..6497 +
1622815799.0394282-CDS-M-pyrifera_M_contig12862:7667..77901622815799.0394282-CDS-M-pyrifera_M_contig12862:7667..7790Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12862 7668..7790 +
1692277574.678968-CDS-M-pyrifera_M_contig12862:7667..77901692277574.678968-CDS-M-pyrifera_M_contig12862:7667..7790Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12862 7668..7790 +
1622815799.050912-CDS-M-pyrifera_M_contig12862:8723..90111622815799.050912-CDS-M-pyrifera_M_contig12862:8723..9011Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12862 8724..9011 +
1692277574.691633-CDS-M-pyrifera_M_contig12862:8723..90111692277574.691633-CDS-M-pyrifera_M_contig12862:8723..9011Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12862 8724..9011 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12862.5746.1

>prot_M-pyrifera_M_contig12862.5746.1 ID=prot_M-pyrifera_M_contig12862.5746.1|Name=mRNA_M-pyrifera_M_contig12862.5746.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=255bp
MREVALLTAAGGDGLATVVDVLTGTQITSLKNCSAQPGSTALIAGDFVAS
AQVKGTAVHFWAWGSEQPRLKCHAPEKLGPLAVSDDGWLCAGGGLSGRVY
LWEVASGALLHAWDAHYKAVSALAFSPDGCFLYSGGEDAMVSAWNMLAAV
DPEGGAGFKGGGAGTSSSSGGGRHSSFPTTWTASQHSLPVTGIFAAKGGG
RVYTCSLDRTARVWDSGSGRLLLSATCPVFLRTVTADPAETFLFAAGGGG
VIYQV
back to top

mRNA from alignment at M-pyrifera_M_contig12862:2944..9011+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12862.5746.1 ID=mRNA_M-pyrifera_M_contig12862.5746.1|Name=mRNA_M-pyrifera_M_contig12862.5746.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=6068bp|location=Sequence derived from alignment at M-pyrifera_M_contig12862:2944..9011+ (Macrocystis pyrifera P11B4 male)
ATGAGGGAGGTGGCACTGCTGACGGCCGCCGGCGGTGACGGCCTGGCCAC
AGTGGTGGACGTTCTCACGGGCACCCAGATTACGAGCCTCAAGAACTGCT
CTGCACAGCCAGGATCCACCGCTCTCATCGCCGGAGACTTTGTCGCCAGT
GCACAGGTAGGTGTTCGTCGAAGGTCCCTGTTCCGGGAGGGGTCTAAGGT
TTCAGCAGCAGCAGTAGCAGAATCAGCAGCAATGACAGTAGCATTGCGTC
GTTACACGCAAACATGGGGAGATAACCAAGACTTGTTTGCGTCCTTTTTT
AACCGCAACCTCGTTTCGGCGACAGTGCATCCTCCAGCTGCCAGGGCAAG
ACAAGAGGTGCAACTATCTTGGGTGGTGGGTGGTGGGTGGGTGGTGGGTG
GTGGTGTGTGTGGGATGTGAGATGAGCGTCCTCCCCCCCACCATCTCTCC
CCTTTTCCAATCCATGTCCCGTTAGCGAATGTCCTTGGATGCTTGTGCGT
ATCATGCTGATAGTCGCCGACTGGGTTGACTGTTGGCGGTGTTGGGCCCC
ACAGCCCGGCTGTCGAGCAGCAGCACCGGCAGCAGCAGCAGCAAGCAGCA
TGCCTTGACTACTGACTGCTGTACAGGTAGTTTTGATCACCATTGATACG
CGACAACGAGTAGTCTACAGCCAGTCTACACCACTGCTCTGTTATTTCGC
CGGGGATGCCAAGGGCTGCTGCAGGGTGGGCTTGCTGTTTGCTGCTTGCT
GGGTGGGGAAGCCGTGGCGGGAGAGGCTAACCCCAAGCTCGAGAGCAGCC
GCTTGACTATTGAAGCCATTTGGGCACTATCGCTACAAGTAGCACGTACG
TAGGTTGCACAAGCGCATCAAACATCGAGGATGTACGGGCTGGCACCATA
GCTACTGCTGTACGAACGTAAACGTATGCCAGGCAATAGAGCATGTCGAG
CTACGAAGAGCAACTACTGTACGTACGTAGAGCTAGTGCACTGAGGGATA
GAGCAGCTACTAGAAGAGCAAGAGCTGTACACGTGCATTCAGGTCTCACG
ATACGCAGAGTAGCCTAAGTGAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAACACCTATTATA
CCATGCAACCACAAGAAGCAGCAGAAGCAGGAGCACATACCGCTGTAGAG
CACTGCTGTCTGCCATGTACAAAGTACCTCGTGGTATCGTGCATACCAGT
AGCTTAAAGACGAACGTTCACGCATCAACATGCAAGTGTACAGGAGCAGT
ATTAATAGTAAGAGCACTTGCTCTCACTGCCGGGGGTACCACCTCTATTT
TTTTTTGCCGTGCCACCCCCCCCCAGCCACGCTCCCTCCGCCCCTCCATC
CTCCAACCTCCGTCCTGCTCTCCGCACCTCACCCCTAGTTAGTTGGTTTT
CGTAAGGAGGCGCTGGACTTTCGCACAGGGGTAACGTAAGTGCGATCGTT
TCTCAACAACGATCCTTTTTTTGTTCTCTCGACAATGCCGGTAAGGGTGC
TTGCTACGTGCTAAAAATAAAAAGTCGAACATTTCTATATATTTTTTAGA
AGGATCTCTCGACTAGATCTTTCCGATAACAACTTCAACCCCTTTAGCAC
TGCAGTCCCAATTTTTGGGACGAACCCAGTCTAATTCCAAGTGATTTGTC
CTCAGAACGGGACTGCAGTACTAAAATGGCTAATGCTGCTGGTTGTTCGG
TTCCTTCCGGTGATGGCAACCTTCCCTTCGTTCTGGTTAAAGGTCGTGCG
CTGAAGAACGTTCGCACCCCCGTAGTTGGTTGGTTGATTGGTTGATTGGT
TGGTTGGTCGATTGGTTGGTTGGTTGGTTGACCCCGGTAGGGCAAACAAA
TTCTGGGTGGTCCGTCCCCAAAACGGGATTGCTGTCTTGAAAGGGTTCAT
TGGCCTGTTGTGTGGTTTGCTGTTTGGTTGGTTGGCTGGCTGGCGGGTTG
GTTGGTTGGTTAGATGGTTGGTTGGTTGGTTGGTTGATTGGTTGGTAGGT
TGACTGGCTGGCGGGTTTGTTGGTTGGTTGCTTGATGGCTTGGGGGGCTG
CATGTCGTGGAGAACCTTGGCCTAGGATCGACCAAGTGGTTGACATTGTG
TTGACCACCTTGAAGAAAAGCGCGAACGACTATTACGGGGGACCATAGTA
AATAGGACCAAATATTGTTAATAAAACTAAGTATATATATGTTTTTATGT
AGACTATAGGCCCTATTAACTATGGACCCCCGTAAAATTAGGATTTTGTT
TTTTTGGGAACGAAGGTGTAATGAGGAGCTACTGCTGTGGTGTCGACTAT
CATCGCAATTTTCGACGCGAGCCGACGCCGGAAGAACGAAAGGGCTGAAG
TGTGGGGAGAGGGGGGATAAGAGGCTGCTACTTGTATCTATCTGACCCCG
GGTCTGAGTTACGATTATTCATAGGGGAAAAAAAAATAAGGGCGAAGGTG
ATTAATAGGATGGAAAATAAATAATAAATAATACCAGCATCATTAATGAG
TCATTTTGTCGAAGCCGGGTCGTATCGTAAGCACTCCTGGATTCGTTCGC
ATGTTTGTTTGGCGGCAGGTGAAAGGAACCGCGGTGCACTTCTGGGCCTG
GGGCTCGGAGCAGCCGAGGCTCAAGTGCCACGCTCCCGAGAAGCTCGGCC
CCCTCGCCGTGTCCGGTGAGCGTCGTAACCCGGTCCTGTGTCTACCGGTG
GTGTGGTGATGGTGGTGGTTGAGGTGGGGGTGGATGTGGGGGAGGTGATA
ATGGTGTCGGTGTTGGTGTTGGTGTTGGTTATTGTTGGGATGTTGGTGTT
GGGGTTGGGGTTGGGGTTAGTAGTACCAAGAGTATCATGGTGGTATCAAT
ACATCGCTCGTAGTAGTATGACCCTTAATAGTAATAGTGGAGGCAGCAGT
AGTAGTAATAGTAGTAGTAGTAGTAGTAGCAGCAGCAGTAGTGGTAATAC
TAGTAGCAGGCAGCAGCAACACGAGCAGTAACAGAAGTAGCAGCAGCAGC
AGCCGCAGCGGTAGCATCGTGGCTCTCATCGATATCAGCTGGACCCAGCA
TCGCTACAAAATATACAGCATCATTACGCCCCTCCCCCCCCCGCTTCATT
GACGCCGTCATCCATACCAGGTATGCAACATAATCCGCCTCGAAAGCGGT
TCTCAGTGAGATGCAGCTCGCCCTTCGTGCGACTCGCTCAACACCTCACG
GCATTTCGCGCTTGGTGCAGGCAATGTCTGTCTGGTCGGTGAAAAGCCGA
CGTGATCCGTCCCGGCATTGTAGGGACGCGAGGGTCTATGGTCATTCGAC
TACAGCCATGCATGGTAATCAGTACCCCTCCCCTCCCCCTCTTGGTTCGT
CTTCCAATCGTTTATCGTCGCCCCCCCCCCCCCGCTTGAACGCATGCACG
CAGACGACGGGTGGCTGTGTGCAGGGGGGGGGTTGTCGGGGAGAGTGTAC
CTCTGGGAGGTCGCGAGCGGCGCACTGCTGCACGCTTGGGATGCCCACTA
CAAGGTAAGATGTGATGGGATGGGCTGGGGCGGGATGGGATGAGATGTCA
TGTGATTGGATGGGATGGGATGGGATGGGATGGGATGATATGGGATGTGA
TTGGATGGCGTGGGGTGGGACGGGCTGGGATGGGAGGAGATGTGATTGGA
TGGGGTGGGAGGGGGATGGGGTGGAGTGGGGTGGAGTGGGATGTGCTCTG
TGTCTGAAACTTGGTCCAGCCTCGACGACATGGTTGGTAGCCTACACTAA
AGTCCTCTTTAAGTCTTCATTCCGAGAATTCCCTAGGCGGCTGGTGTTTG
GGTGTATCTGGTTATTCAGGGTAGGCGATTGCAATCAAGCGTGTTCCGTC
CCTCTTTGGCGAAAGTGATTGATTCATTACACCCCCCCCCCCCTTCTCTG
TTTCTTTACATACCTGGTACCTGGTATACATACATACAGGCAAGAATACG
AAAACCTTTAAGGTACAAATTTCAGCTTGTTTTGTCGAAGCTGGGGCAAG
GTCTAATGATACTGTTTGCTATACTATTATACGAACAGGCCTCGTGTGTT
TCGAGAGCTGTCTAGCGCGCTCGGAGGAGCACGGTGCGAATAAGAGTCTA
CAGTTCGAGCGCGTAAAAAGCGTTGGCTGACGGGCAAATGTACTATCCAT
GCCGTACGTAGGAGACGAGTCACTTCGGACGCGTCAAGGCCTCTTGTGGC
CTCATTATACTAGATATAATGTCGGGGCCGGTCAGTCAAGCCGGTCAGTC
AAGCCGGTCAGTCAAGCCGGTCAGTCAAGCCGGTCAGTCAAGTCGGTCAG
TCATGAGGTCTCCTAGTATTTTGAAAGGCGTGCACGGTAGGGGTCGTTCC
CCGCACATGATGATAATTTTATGAGAACGATGATGACGATGGCGATGGGG
CATGGCCATGATGAACGGTATCGAATTTGTGTCGTTTTGTTTTCATGCGT
GTGTGTATTCGTGTGATATGGCATGGGTTGGGGCGGGTTGGGGCGGGGCC
GGGTGGGCTGATTTGTGCTGTGTTATGCTGTGTTGTGTTGCGTTGTGATG
CGCTTTGTTGCGTTGCGTTTGATTGTGTTATGCTGTGTTGTGTTGCGTTG
TGATGCGCTTTGTTGCGTTGCGTTTGATTTTTTTTTTCACGACCAACTGC
GCGTGGTTCGTTCCTCCTCCGTAGGCGGTGTCGGCGCTGGCCTTCAGTCC
CGACGGCTGCTTTCTGTACTCCGGCGGGGAGGACGCGATGGTGTCCGCCT
GGAACATGCTAGCCGCGGTTGACCCGGAAGGAGGCGCCGGGTTCAAGGTA
CCGAACTGAAAAATATTTTTTTAGTGCTGGGTGGTGGTGTTGGCGATCTG
CGTGTGCGCGCAGAATGTGTGTGTAGGTGCATGATTTGTGATGTTGTGTC
GGTGCCGAAGGGTTGGAGGTGTTTTGTCTGTGTATTATGGTGCTTCGTTG
TGCTCCAAAGTTTGTGTGTGTTTGATGTGTCTGTGTGCGTCGTCTTTAAT
CTGATCACAATGCGATCCGCCGCCTCTTGTTGATGTTGTTGTTGTTGTTG
TTGTTGGCGTTGGTGTTGATTGTTGTTGTTGGTGCTGTTGTTGCTTTCGT
ATTGTGGGTTTAGCCTTGCCGCACCTCTCCTCAGTTCAGGGCGGCGCTGG
CGGTAGCTCTAGCAGCGGTGGCGGTGGCAGCGATGCGCGGGTTTCAAGCG
AGCGACAGCTGCTGTAGACTATTATTTTTTTGTAACAACCCTACCACAGC
AGTGTTTTTTTTTTATGTCAACCCTACCACAGCAGTGATTTCCCGTCGTC
GGTTCTTCTTGATCTTGTTGAACGTTTTTTTTATTCGCCCTTGACCCATC
AGGGTGCGAACCTTACCTTACAGCTACGTGCAGAAACAAAAATATGACTG
TAATTCCAAGTGTTTCGTGTCTACAATGGGAGTGCAGCCCTTAAGGCCTA
CCATAAAGGGGATGCTCAATTAATTAGTAACCGTTTTTAGTGCTGCACTG
TTGCGGTTACATACAGAAACCAACATCTGGCTCTAATTTCCCAAGTGTTT
CGTCTACGACGGGAGTGGGAGTCCATAAGGCCTATTTTTTTTTCAATCTA
TTACTCCATTGTGCTGTGGTTTGCTTTAAATACATTCCGATTAACATATA
TACCCGTATGTATGCCCTTTTTTCGTTTTTCTTTTTTTGCGCGCACGCAC
GCACGCCTCTGTTTTTTACTGAAACTCCAGGGTGGCGGTGCCGGCACCAG
TAGCAGTAGCGGCGGCGGCCGCCACTCCTCCTTCCCCACCACATGGACGG
CGTCCCAGCACTCCCTCCCGGTGACGGGCATCTTCGCGGCCAAAGGCGGC
GGGAGGGTGTACACCTGCTCGCTCGACCGGACGGCGCGCGTCTGGGACTC
GGGATCGGGGCGTCTCCTCCTGTCGGCGACTTGTCCGGTCTTCCTGAGGA
CGGTCACCGCGGACCCGGCCGAGACGTTTTTGTTCGCTGCCGGCGGGGGC
GGGGTCATCTATCAGGTG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig12862:2944..9011+

>mRNA_M-pyrifera_M_contig12862.5746.1 ID=mRNA_M-pyrifera_M_contig12862.5746.1|Name=mRNA_M-pyrifera_M_contig12862.5746.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1530bp|location=Sequence derived from alignment at M-pyrifera_M_contig12862:2944..9011+ (Macrocystis pyrifera P11B4 male)
ATGAGGGAGGTGGCACTGCTGACGGCCGCCGGCGGTGACGGCCTGGCCAC
AGTGGTGGACGTTCTCACGGGCACCCAGATTACGAGCCTCAAGAACTGCT
CTGCACAGCCAGGATCCACCGCTCTCATCGCCGGAGACTTTGTCGCCAGT
GCACAGATGAGGGAGGTGGCACTGCTGACGGCCGCCGGCGGTGACGGCCT
GGCCACAGTGGTGGACGTTCTCACGGGCACCCAGATTACGAGCCTCAAGA
ACTGCTCTGCACAGCCAGGATCCACCGCTCTCATCGCCGGAGACTTTGTC
GCCAGTGCACAGGTGAAAGGAACCGCGGTGCACTTCTGGGCCTGGGGCTC
GGAGCAGCCGAGGCTCAAGTGCCACGCTCCCGAGAAGCTCGGCCCCCTCG
CCGTGTCCGGTGAAAGGAACCGCGGTGCACTTCTGGGCCTGGGGCTCGGA
GCAGCCGAGGCTCAAGTGCCACGCTCCCGAGAAGCTCGGCCCCCTCGCCG
TGTCCGACGACGGGTGGCTGTGTGCAGGGGGGGGGTTGTCGGGGAGAGTG
TACCTCTGGGAGGTCGCGAGCGGCGCACTGCTGCACGCTTGGGATGCCCA
CTACAAGACGACGGGTGGCTGTGTGCAGGGGGGGGGTTGTCGGGGAGAGT
GTACCTCTGGGAGGTCGCGAGCGGCGCACTGCTGCACGCTTGGGATGCCC
ACTACAAGGCGGTGTCGGCGCTGGCCTTCAGTCCCGACGGCTGCTTTCTG
TACTCCGGCGGGGAGGACGCGATGGTGTCCGCCTGGAACATGCTAGCCGC
GGTTGACCCGGAAGGAGGCGCCGGGTTCAAGGCGGTGTCGGCGCTGGCCT
TCAGTCCCGACGGCTGCTTTCTGTACTCCGGCGGGGAGGACGCGATGGTG
TCCGCCTGGAACATGCTAGCCGCGGTTGACCCGGAAGGAGGCGCCGGGTT
CAAGGGTGGCGGTGCCGGCACCAGTAGCAGTAGCGGCGGCGGCCGCCACT
CCTCCTTCCCCACCACATGGACGGCGTCCCAGCACTCCCTCCCGGTGACG
GGCATCTTCGCGGCCAAAGGCGGCGGGAGGGTGTACACCTGCTCGCTCGA
CCGGACGGCGCGCGTCTGGGACTCGGGATCGGGGCGTCTCCTCCTGTCGG
CGACTTGTCCGGTCTTCCTGAGGACGGTCACCGCGGACCCGGCCGAGACG
TTTTTGTTCGCTGCCGGCGGGGGCGGGGTCATCTATCAGGTGGGTGGCGG
TGCCGGCACCAGTAGCAGTAGCGGCGGCGGCCGCCACTCCTCCTTCCCCA
CCACATGGACGGCGTCCCAGCACTCCCTCCCGGTGACGGGCATCTTCGCG
GCCAAAGGCGGCGGGAGGGTGTACACCTGCTCGCTCGACCGGACGGCGCG
CGTCTGGGACTCGGGATCGGGGCGTCTCCTCCTGTCGGCGACTTGTCCGG
TCTTCCTGAGGACGGTCACCGCGGACCCGGCCGAGACGTTTTTGTTCGCT
GCCGGCGGGGGCGGGGTCATCTATCAGGTG
back to top