mRNA_M-pyrifera_M_contig12860.5744.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12860.5744.1
Unique NamemRNA_M-pyrifera_M_contig12860.5744.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12860.5744.1 vs. uniprot
Match: A0A7S2D1F7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D1F7_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 3.190e-10
Identity = 36/100 (36.00%), Postives = 54/100 (54.00%), Query Frame = 1 
Query:  154 AGPHPYLDRFASGMHRPLEG---DDSSWRMASIQPVPIPDLSHTGIRTKFSPGAGNGFTPDGNMTSTFRTSIHETMCGLPGGSLGDSRDMRTRDYARAIR 444
            A P PYL+R A+ MH P+       + W     QP+ IPDL+HTG+RT+F+        PDG+++   + SI   +  LP     D+ D++  D  R+IR
Sbjct:   27 AAPAPYLERMAA-MHEPIRSAAETPAPWSKVHTQPIAIPDLNHTGVRTEFTYNGETFLRPDGSVSLDLQNSIRSKVAALPKRPTHDTDDIQHIDLVRSIR 125
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12860.5744.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S2D1F7_9STRA3.190e-1036.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12860contigM-pyrifera_M_contig12860:3132..5369 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.8
Seed ortholog evalue5.4e-07
Seed eggNOG ortholog44056.XP_009032289.1
Preferred nameRRBP1
KEGG koko:K14000,ko:K16251
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0012505,GO:0016020,GO:0016021,GO:0019538,GO:0023052,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0032991,GO:0034641,GO:0034645,GO:0042175,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0071704,GO:0098827,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.regulation of DNA-templated transcription, elongation
EggNOG OGsCOG5164@1,KOG1999@2759
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-24_003060.1
EC2.7.7.6
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko01000,ko03021
Exons2
Model size1551
Cds size1524
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12860.5744.1prot_M-pyrifera_M_contig12860.5744.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12860 3132..5342 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815798.8933363-CDS-M-pyrifera_M_contig12860:3131..44711622815798.8933363-CDS-M-pyrifera_M_contig12860:3131..4471Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12860 3132..4471 -
1692277574.6097176-CDS-M-pyrifera_M_contig12860:3131..44711692277574.6097176-CDS-M-pyrifera_M_contig12860:3131..4471Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12860 3132..4471 -
1622815798.9090319-CDS-M-pyrifera_M_contig12860:5158..53421622815798.9090319-CDS-M-pyrifera_M_contig12860:5158..5342Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12860 5159..5342 -
1692277574.6195397-CDS-M-pyrifera_M_contig12860:5158..53421692277574.6195397-CDS-M-pyrifera_M_contig12860:5158..5342Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12860 5159..5342 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815798.9237807-UTR-M-pyrifera_M_contig12860:5342..53691622815798.9237807-UTR-M-pyrifera_M_contig12860:5342..5369Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12860 5343..5369 -
1692277574.6273022-UTR-M-pyrifera_M_contig12860:5342..53691692277574.6273022-UTR-M-pyrifera_M_contig12860:5342..5369Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12860 5343..5369 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12860.5744.1

>prot_M-pyrifera_M_contig12860.5744.1 ID=prot_M-pyrifera_M_contig12860.5744.1|Name=mRNA_M-pyrifera_M_contig12860.5744.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=508bp
MPRLSDIVSGWENAGDIVPEEGSGEDSIAPHRRKVVRTLAAAAGPHPYLD
RFASGMHRPLEGDDSSWRMASIQPVPIPDLSHTGIRTKFSPGAGNGFTPD
GNMTSTFRTSIHETMCGLPGGSLGDSRDMRTRDYARAIRNHKVDPCGGPL
LHAHMSSLELGLAPGAGTAASTMASTTSHEGASIRRSALLGDFRGRLSPP
SSPQSNRRALVSCGSGGAGVGIGDSGGGGGGVASIDNRQALLQREFRGVR
LASAVVASVGTAHESGDHRFGGTKSGVMPPRTVNTPTVSASISGGRGGQA
RNEGGADSDLDASRQRGVLADVRSGTPSNAGKQRARARVHVGGREVVRCL
PEYEEPESEAGVAIGKSLGEGQASFDGDEAWQQECARGRRRRRGRRGRGG
IMPQASDSFEGGRGRGPSEGRALQASASSPSLARRRSLGKRSTRSARLKK
PFSSDSLFACLLDVHYGNTRDLSPDKTSGRKWDLQDLPARVVTSVAAPRG
WDGFASED
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mRNA from alignment at M-pyrifera_M_contig12860:3132..5369-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12860.5744.1 ID=mRNA_M-pyrifera_M_contig12860.5744.1|Name=mRNA_M-pyrifera_M_contig12860.5744.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2238bp|location=Sequence derived from alignment at M-pyrifera_M_contig12860:3132..5369- (Macrocystis pyrifera P11B4 male)
CCGACAGCTCAATCATGGACCAGCAGCATGCCTCGACTGTCGGACATCGT
GTCAGGGTGGGAGAACGCGGGTGACATTGTTCCCGAAGAAGGCAGCGGCG
AGGATAGCATAGCCCCGCACCGGAGAAAGGTTGTGCGAACGCTTGCCGCG
GCGGCAGGACCCCATCCTTACCTCGACCGGTTCGCGAGCGGAATGCACAG
GCCGCTGGAAGGTGGGCGCACAAAGTACTATGAAATATTTGGGCTTGGGT
TACGGGGAAAGGCTGTCAGAATTGGATGGCATATCACGAGCATGAGCACG
TGTGCGTGCTGGGTTACAAGGTTTACTTCCCTCACAAGGAGCACCGTTGT
GTTCAACGCCTTATTTCTGTATGGTCCGAGTAGGAACGCGATGAAAAGTG
CGACGTTAACGTCCGTCATCGGGGGTAGTGGTAGTGTTGCGTACAACGCC
GCTTTAGCCTATGCACCCCTGGGTGGTGCTGCCCGTCGGCATTTTTCACC
GGATCACTGCACCATGCTGCAGAAGCCGACTGAACGGACCTGGGTGAAAG
GTACGGCTGGAAGATCGCCACATCTTCCTCACGCCTGGGCTCGAAGAAAG
TACGCGAGGTAGATACGAGAACAACATAAGATTTAGTGTTGTTACCTCCT
GTACTGTGATCGCAAAAATACAACAGACTGTTTACTGTTCTACCAACTAT
GTAAACACGGGTAGTTCTCGACGGCAAAAATATGCAGTACAAGGGACAAG
CACGAAGTTTTTCAGAGTCCATTTCTTCACCGGGTAGTATTTTAGGCCCA
AATAACTCTTCTTTCTAGACTACAAGCCCTTCCTTCGTTCTTTCGCATAC
ATATACACCTGCTGACACGCGCCCCCTCCCTACTTACCCGCGGTTCAGGT
GACGACTCGAGCTGGCGCATGGCCTCTATCCAGCCGGTGCCCATCCCCGA
CCTCAGCCACACGGGAATCCGTACCAAATTTTCGCCGGGAGCCGGAAACG
GTTTCACCCCCGACGGCAACATGACTTCGACATTTCGCACCAGCATCCAC
GAGACCATGTGCGGCCTCCCCGGCGGGTCCCTCGGAGACTCCCGCGACAT
GAGGACCAGGGACTACGCGCGGGCGATTCGAAACCACAAGGTTGATCCGT
GTGGCGGTCCCCTACTTCACGCCCACATGTCAAGCCTCGAGCTGGGGCTC
GCTCCAGGCGCCGGCACGGCAGCCTCGACGATGGCGTCGACGACGTCGCA
CGAGGGTGCATCGATACGGCGCAGCGCTTTGCTAGGAGACTTTCGCGGCA
GGCTAAGTCCGCCGTCTTCTCCACAGTCAAACAGACGAGCTCTCGTCAGT
TGTGGCAGTGGTGGTGCCGGAGTTGGTATTGGTGACAGTGGCGGCGGTGG
TGGTGGCGTCGCGTCGATAGACAACCGCCAAGCTTTGCTGCAGCGGGAGT
TCAGGGGCGTGAGGCTGGCGTCGGCGGTGGTAGCCTCGGTTGGTACGGCC
CACGAAAGCGGCGATCACAGATTCGGGGGCACCAAAAGTGGAGTAATGCC
ACCTAGAACGGTAAACACGCCCACGGTGAGCGCGTCGATTTCTGGCGGCA
GAGGGGGGCAGGCACGGAACGAGGGCGGGGCGGATTCAGATCTGGACGCG
TCGCGACAGCGAGGTGTACTTGCGGATGTCAGGAGTGGGACGCCATCTAA
CGCAGGGAAGCAGCGAGCACGCGCCAGGGTACATGTAGGCGGGAGAGAGG
TGGTGCGCTGTCTTCCGGAATATGAAGAGCCGGAATCCGAGGCAGGCGTT
GCCATCGGGAAGAGTTTAGGGGAGGGGCAGGCATCGTTCGATGGAGACGA
GGCGTGGCAACAAGAATGCGCAAGGGGGAGGAGGAGGAGGAGGGGCAGGA
GAGGGAGGGGGGGGATAATGCCACAAGCGTCCGACAGTTTCGAGGGGGGG
AGAGGGCGCGGCCCTAGCGAGGGCCGGGCTCTTCAAGCGTCGGCTTCTTC
TCCTTCGCTTGCGCGTCGAAGGTCCTTGGGCAAGCGGTCCACCCGGTCTG
CCCGTCTCAAGAAACCTTTCTCGTCCGACAGCCTGTTCGCGTGCCTATTG
GACGTGCACTACGGCAACACCCGTGACTTATCACCCGATAAAACGTCCGG
GCGAAAATGGGACCTCCAAGACCTGCCGGCCCGAGTCGTCACGAGCGTGG
CCGCCCCCAGGGGTTGGGACGGGTTCGCTTCGGAAGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12860:3132..5369-

>mRNA_M-pyrifera_M_contig12860.5744.1 ID=mRNA_M-pyrifera_M_contig12860.5744.1|Name=mRNA_M-pyrifera_M_contig12860.5744.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=3048bp|location=Sequence derived from alignment at M-pyrifera_M_contig12860:3132..5369- (Macrocystis pyrifera P11B4 male)
ATGCCTCGACTGTCGGACATCGTGTCAGGGTGGGAGAACGCGGGTGACAT
TGTTCCCGAAGAAGGCAGCGGCGAGGATAGCATAGCCCCGCACCGGAGAA
AGGTTGTGCGAACGCTTGCCGCGGCGGCAGGACCCCATCCTTACCTCGAC
CGGTTCGCGAGCGGAATGCACAGGCCGCTGGAAGATGCCTCGACTGTCGG
ACATCGTGTCAGGGTGGGAGAACGCGGGTGACATTGTTCCCGAAGAAGGC
AGCGGCGAGGATAGCATAGCCCCGCACCGGAGAAAGGTTGTGCGAACGCT
TGCCGCGGCGGCAGGACCCCATCCTTACCTCGACCGGTTCGCGAGCGGAA
TGCACAGGCCGCTGGAAGGTGACGACTCGAGCTGGCGCATGGCCTCTATC
CAGCCGGTGCCCATCCCCGACCTCAGCCACACGGGAATCCGTACCAAATT
TTCGCCGGGAGCCGGAAACGGTTTCACCCCCGACGGCAACATGACTTCGA
CATTTCGCACCAGCATCCACGAGACCATGTGCGGCCTCCCCGGCGGGTCC
CTCGGAGACTCCCGCGACATGAGGACCAGGGACTACGCGCGGGCGATTCG
AAACCACAAGGTTGATCCGTGTGGCGGTCCCCTACTTCACGCCCACATGT
CAAGCCTCGAGCTGGGGCTCGCTCCAGGCGCCGGCACGGCAGCCTCGACG
ATGGCGTCGACGACGTCGCACGAGGGTGCATCGATACGGCGCAGCGCTTT
GCTAGGAGACTTTCGCGGCAGGCTAAGTCCGCCGTCTTCTCCACAGTCAA
ACAGACGAGCTCTCGTCAGTTGTGGCAGTGGTGGTGCCGGAGTTGGTATT
GGTGACAGTGGCGGCGGTGGTGGTGGCGTCGCGTCGATAGACAACCGCCA
AGCTTTGCTGCAGCGGGAGTTCAGGGGCGTGAGGCTGGCGTCGGCGGTGG
TAGCCTCGGTTGGTACGGCCCACGAAAGCGGCGATCACAGATTCGGGGGC
ACCAAAAGTGGAGTAATGCCACCTAGAACGGTAAACACGCCCACGGTGAG
CGCGTCGATTTCTGGCGGCAGAGGGGGGCAGGCACGGAACGAGGGCGGGG
CGGATTCAGATCTGGACGCGTCGCGACAGCGAGGTGTACTTGCGGATGTC
AGGAGTGGGACGCCATCTAACGCAGGGAAGCAGCGAGCACGCGCCAGGGT
ACATGTAGGCGGGAGAGAGGTGGTGCGCTGTCTTCCGGAATATGAAGAGC
CGGAATCCGAGGCAGGCGTTGCCATCGGGAAGAGTTTAGGGGAGGGGCAG
GCATCGTTCGATGGAGACGAGGCGTGGCAACAAGAATGCGCAAGGGGGAG
GAGGAGGAGGAGGGGCAGGAGAGGGAGGGGGGGGATAATGCCACAAGCGT
CCGACAGTTTCGAGGGGGGGAGAGGGCGCGGCCCTAGCGAGGGCCGGGCT
CTTCAAGCGTCGGCTTCTTCTCCTTCGCTTGCGCGTCGAAGGTCCTTGGG
CAAGCGGTCCACCCGGTCTGCCCGTCTCAAGAAACCTTTCTCGTCCGACA
GCCTGTTCGCGTGCCTATTGGACGTGCACTACGGCAACACCCGTGACTTA
TCACCCGATAAAACGTCCGGGCGAAAATGGGACCTCCAAGACCTGCCGGC
CCGAGTCGTCACGAGCGTGGCCGCCCCCAGGGGTTGGGACGGGTTCGCTT
CGGAAGATGTGACGACTCGAGCTGGCGCATGGCCTCTATCCAGCCGGTGC
CCATCCCCGACCTCAGCCACACGGGAATCCGTACCAAATTTTCGCCGGGA
GCCGGAAACGGTTTCACCCCCGACGGCAACATGACTTCGACATTTCGCAC
CAGCATCCACGAGACCATGTGCGGCCTCCCCGGCGGGTCCCTCGGAGACT
CCCGCGACATGAGGACCAGGGACTACGCGCGGGCGATTCGAAACCACAAG
GTTGATCCGTGTGGCGGTCCCCTACTTCACGCCCACATGTCAAGCCTCGA
GCTGGGGCTCGCTCCAGGCGCCGGCACGGCAGCCTCGACGATGGCGTCGA
CGACGTCGCACGAGGGTGCATCGATACGGCGCAGCGCTTTGCTAGGAGAC
TTTCGCGGCAGGCTAAGTCCGCCGTCTTCTCCACAGTCAAACAGACGAGC
TCTCGTCAGTTGTGGCAGTGGTGGTGCCGGAGTTGGTATTGGTGACAGTG
GCGGCGGTGGTGGTGGCGTCGCGTCGATAGACAACCGCCAAGCTTTGCTG
CAGCGGGAGTTCAGGGGCGTGAGGCTGGCGTCGGCGGTGGTAGCCTCGGT
TGGTACGGCCCACGAAAGCGGCGATCACAGATTCGGGGGCACCAAAAGTG
GAGTAATGCCACCTAGAACGGTAAACACGCCCACGGTGAGCGCGTCGATT
TCTGGCGGCAGAGGGGGGCAGGCACGGAACGAGGGCGGGGCGGATTCAGA
TCTGGACGCGTCGCGACAGCGAGGTGTACTTGCGGATGTCAGGAGTGGGA
CGCCATCTAACGCAGGGAAGCAGCGAGCACGCGCCAGGGTACATGTAGGC
GGGAGAGAGGTGGTGCGCTGTCTTCCGGAATATGAAGAGCCGGAATCCGA
GGCAGGCGTTGCCATCGGGAAGAGTTTAGGGGAGGGGCAGGCATCGTTCG
ATGGAGACGAGGCGTGGCAACAAGAATGCGCAAGGGGGAGGAGGAGGAGG
AGGGGCAGGAGAGGGAGGGGGGGGATAATGCCACAAGCGTCCGACAGTTT
CGAGGGGGGGAGAGGGCGCGGCCCTAGCGAGGGCCGGGCTCTTCAAGCGT
CGGCTTCTTCTCCTTCGCTTGCGCGTCGAAGGTCCTTGGGCAAGCGGTCC
ACCCGGTCTGCCCGTCTCAAGAAACCTTTCTCGTCCGACAGCCTGTTCGC
GTGCCTATTGGACGTGCACTACGGCAACACCCGTGACTTATCACCCGATA
AAACGTCCGGGCGAAAATGGGACCTCCAAGACCTGCCGGCCCGAGTCGTC
ACGAGCGTGGCCGCCCCCAGGGGTTGGGACGGGTTCGCTTCGGAAGAT
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