mRNA_M-pyrifera_M_contig128582.5741.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128582.5741.1
Unique NamemRNA_M-pyrifera_M_contig128582.5741.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig128582.5741.1 vs. uniprot
Match: A0A7S4MJJ8_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MJJ8_9EUKA)

HSP 1 Score: 60.5 bits (145), Expect = 3.070e-8
Identity = 41/98 (41.84%), Postives = 60/98 (61.22%), Query Frame = 1 
Query:   79 YYISPIGSDSNSGTSAQDPFLTLSKALAASASNDTINAAAGVYKGDANVGLSISDRSVRGSDES-SCVFQGSNST----LFQLSGSVLLSGLTLEGGE 357
            +YISP GS+SNSGTS   PF  LS AL  +A  DT+  A+G Y G  N  L++S  S+ G+  S S VFQG++++    +F+L+    + G+T+   E
Sbjct:   17 WYISPFGSNSNSGTSPTSPFFDLSTALHHAAVGDTVRVASGYYSGSVNTYLTLSGISLIGTAGSGSTVFQGTSTSRVQYIFRLTDGSTIQGITVSTAE 114
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BLAST of mRNA_M-pyrifera_M_contig128582.5741.1 vs. uniprot
Match: A0A4R0K2W0_9ACTN (DUF1565 domain-containing protein n=2 Tax=Kribbella TaxID=182639 RepID=A0A4R0K2W0_9ACTN)

HSP 1 Score: 56.6 bits (135), Expect = 6.190e-7
Identity = 43/108 (39.81%), Postives = 66/108 (61.11%), Query Frame = 1 
Query:   37 AVLLLALVAGACADYYISPIGSDSNSGTSAQDPFLTLSKALAASASNDTINAAAGVYKGDANVGLSISDRS-VRGSDESSCVFQGS-NSTLFQLSGS-VLLSGLTLEG 351
            A+ L A+ A A +DYY+SP GSD+NSGT++  P+ T+ KAL  +    T++ A+G Y  DA     ++ RS V  +  S+ V +G+ NS +FQ+    V L G T++G
Sbjct:   13 ALALPAIPAHAASDYYVSPAGSDTNSGTTSGSPYATIQKALDTAPRGATVHLASGTYLQDA-----VTKRSGVTVTGPSTAVVEGAGNSRIFQIQHDRVTLDGFTIDG 115
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BLAST of mRNA_M-pyrifera_M_contig128582.5741.1 vs. uniprot
Match: UPI0019FF4931 (DUF1565 domain-containing protein n=1 Tax=Chloroflexi bacterium AL-N15 TaxID=2686370 RepID=UPI0019FF4931)

HSP 1 Score: 55.1 bits (131), Expect = 2.330e-6
Identity = 41/104 (39.42%), Postives = 60/104 (57.69%), Query Frame = 1 
Query:   52 ALVAGACADYYISPIGSDSNSGTSAQDPFLTLSKALAASASNDTINAAAGVYKGDANV---GLSISDRSVRGSDESSCVFQGSNSTLFQLSGSVL-LSGLTLEG 351
            A V  A  +YY+SP GSDSNSGTSA  PF T+ KA+  +   DTIN A+G Y  D      G + +  ++ G   ++ +  G NS +F+++   L L G T++G
Sbjct:   26 APVFAAGTNYYVSPSGSDSNSGTSAGSPFQTIQKAVDLAQPGDTINLASGTYNQDIRSRRNGTASAPITLIG-PSNAIIKGGGNSRIFEINHDYLTLDGFTIDG 128
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BLAST of mRNA_M-pyrifera_M_contig128582.5741.1 vs. uniprot
Match: A0A1Q5M6R7_9ACTN (Beta_helix domain-containing protein n=17 Tax=Streptomyces TaxID=1883 RepID=A0A1Q5M6R7_9ACTN)

HSP 1 Score: 52.4 bits (124), Expect = 1.920e-5
Identity = 27/55 (49.09%), Postives = 35/55 (63.64%), Query Frame = 1 
Query:   52 ALVAGACADYYISPIGSDSNSGTSAQDPFLTLSKALAASASNDTINAAAGVYKGD 216
            ++ A     YY+SP GSD+NSGTSA  PF T+ KAL  + +   +N AAG YK D
Sbjct:   25 SVAATTATSYYVSPSGSDTNSGTSAGSPFATIQKALDLAPTGAVVNLAAGTYKQD 79
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128582.5741.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S4MJJ8_9EUKA3.070e-841.84Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A4R0K2W0_9ACTN6.190e-739.81DUF1565 domain-containing protein n=2 Tax=Kribbell... [more]
UPI0019FF49312.330e-639.42DUF1565 domain-containing protein n=1 Tax=Chlorofl... [more]
A0A1Q5M6R7_9ACTN1.920e-549.09Beta_helix domain-containing protein n=17 Tax=Stre... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128582contigM-pyrifera_M_contig128582:123..479 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size357
Cds size357
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815798.7441828-CDS-M-pyrifera_M_contig128582:122..4791622815798.7441828-CDS-M-pyrifera_M_contig128582:122..479Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128582 123..479 +
1692277574.5420523-CDS-M-pyrifera_M_contig128582:122..4791692277574.5420523-CDS-M-pyrifera_M_contig128582:122..479Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128582 123..479 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128582.5741.1prot_M-pyrifera_M_contig128582.5741.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128582 123..479 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128582.5741.1

>prot_M-pyrifera_M_contig128582.5741.1 ID=prot_M-pyrifera_M_contig128582.5741.1|Name=mRNA_M-pyrifera_M_contig128582.5741.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=119bp
MLLIRTPSSGLLAVLLLALVAGACADYYISPIGSDSNSGTSAQDPFLTLS
KALAASASNDTINAAAGVYKGDANVGLSISDRSVRGSDESSCVFQGSNST
LFQLSGSVLLSGLTLEGGE
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mRNA from alignment at M-pyrifera_M_contig128582:123..479+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128582.5741.1 ID=mRNA_M-pyrifera_M_contig128582.5741.1|Name=mRNA_M-pyrifera_M_contig128582.5741.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=357bp|location=Sequence derived from alignment at M-pyrifera_M_contig128582:123..479+ (Macrocystis pyrifera P11B4 male)
ATGCTCTTGATCCGCACGCCAAGCAGCGGACTGCTCGCCGTCCTCCTCCT
GGCCCTCGTGGCAGGTGCCTGCGCCGACTACTACATCTCCCCCATCGGAA
GTGACAGCAACAGCGGCACTTCTGCCCAGGACCCCTTCCTCACCCTCTCC
AAGGCCCTCGCCGCCTCCGCCTCGAACGACACAATCAACGCCGCCGCGGG
AGTCTACAAGGGCGACGCCAACGTCGGCCTCTCGATCAGCGACAGGAGCG
TCCGGGGAAGCGACGAGAGCAGCTGCGTGTTCCAGGGCAGCAACAGCACT
CTCTTCCAGCTCTCTGGCTCTGTGCTGCTGTCGGGCCTTACGCTGGAAGG
CGGCGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig128582:123..479+

>mRNA_M-pyrifera_M_contig128582.5741.1 ID=mRNA_M-pyrifera_M_contig128582.5741.1|Name=mRNA_M-pyrifera_M_contig128582.5741.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=714bp|location=Sequence derived from alignment at M-pyrifera_M_contig128582:123..479+ (Macrocystis pyrifera P11B4 male)
ATGCTCTTGATCCGCACGCCAAGCAGCGGACTGCTCGCCGTCCTCCTCCT
GGCCCTCGTGGCAGGTGCCTGCGCCGACTACTACATCTCCCCCATCGGAA
GTGACAGCAACAGCGGCACTTCTGCCCAGGACCCCTTCCTCACCCTCTCC
AAGGCCCTCGCCGCCTCCGCCTCGAACGACACAATCAACGCCGCCGCGGG
AGTCTACAAGGGCGACGCCAACGTCGGCCTCTCGATCAGCGACAGGAGCG
TCCGGGGAAGCGACGAGAGCAGCTGCGTGTTCCAGGGCAGCAACAGCACT
CTCTTCCAGCTCTCTGGCTCTGTGCTGCTGTCGGGCCTTACGCTGGAAGG
CGGCGAGATGCTCTTGATCCGCACGCCAAGCAGCGGACTGCTCGCCGTCC
TCCTCCTGGCCCTCGTGGCAGGTGCCTGCGCCGACTACTACATCTCCCCC
ATCGGAAGTGACAGCAACAGCGGCACTTCTGCCCAGGACCCCTTCCTCAC
CCTCTCCAAGGCCCTCGCCGCCTCCGCCTCGAACGACACAATCAACGCCG
CCGCGGGAGTCTACAAGGGCGACGCCAACGTCGGCCTCTCGATCAGCGAC
AGGAGCGTCCGGGGAAGCGACGAGAGCAGCTGCGTGTTCCAGGGCAGCAA
CAGCACTCTCTTCCAGCTCTCTGGCTCTGTGCTGCTGTCGGGCCTTACGC
TGGAAGGCGGCGAG
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