mRNA_M-pyrifera_M_contig128580.5740.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128580.5740.1
Unique NamemRNA_M-pyrifera_M_contig128580.5740.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig128580.5740.1 vs. uniprot
Match: A0A024UG05_9STRA (EF-hand domain-containing protein n=9 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UG05_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.600e-21
Identity = 53/125 (42.40%), Postives = 77/125 (61.60%), Query Frame = 1
Query:    1 HSDEVTCVVLVGDLDAVVSGSRDGTVAVADVARGHVRLRFRGHRGCSVNDVVWCPTDRVLASCAAERTVLVWTPFSDTGSSTRLEGATAPVVKLTYVPWARQLVALSADS-TLRAWDLQTCTCVQ 372
            H+D VT +  V DL++VVS SRDG+V V DV RG ++  F  HRG +V D VWCP  +  ASC  ER +L+W+PFSD+    RL G +  +  + +    + L++L  D  T+R WD++   C+Q
Sbjct:  297 HTDHVTRLAFVADLNSVVSSSRDGSVKVVDVHRGVLKRHFALHRG-AVYDFVWCPRPKFFASCGVEREILLWSPFSDSLLG-RLRGHSCSIKSVVWNEEGQNLISLGLDDGTIRVWDVRQLKCLQ 419          
BLAST of mRNA_M-pyrifera_M_contig128580.5740.1 vs. uniprot
Match: T0Q8K2_SAPDV (EF-hand domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0Q8K2_SAPDV)

HSP 1 Score: 94.0 bits (232), Expect = 8.990e-20
Identity = 48/129 (37.21%), Postives = 75/129 (58.14%), Query Frame = 1
Query:    1 HSDEVTCVVLVGDLDAVVSGSRDGTVAVADVARGHVRLRFRGHRGCSVNDVVWCPTDRVLASCAAERTVLVWTPFSDTGSSTRLEGATAPVVKLTYVPWARQLVALSADSTLRAWDLQTCTCVQAFNTA 387
            H+D +TC+  V DL+ +VS S DG++ V D+ RG ++  FR HRG +V    WC   +++ASC  ER VL+W+P+S      RL G T  + ++ +   +  L++L  D  +R WD++ C C Q    A
Sbjct:  291 HTDYITCLEFVADLNCLVSASHDGSIKVVDITRGTLKRDFRQHRG-AVYSFAWCKEPKLIASCGLERQVLLWSPYSIRLVG-RLVGHTCSIKQVIWNTASYSLLSLGFDGLVRVWDVKNCKCNQVIEDA 417          
BLAST of mRNA_M-pyrifera_M_contig128580.5740.1 vs. uniprot
Match: W4GG08_9STRA (EF-hand domain-containing protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GG08_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.230e-19
Identity = 52/131 (39.69%), Postives = 79/131 (60.31%), Query Frame = 1
Query:    1 HSDEVTCVVLVGDLDAVVSGSRDGTVAVADVARGHVRLRFRGHRGCSVNDVVWCPTDRVLASCAAERTVLVWTPFSDTGSSTRLEGATAPVVKLTYVPWARQLVALSADS-TLRAWDLQTCTCVQAFNTAT 390
            H+D VT +  V DL++VVS SRDG+V V DV RG ++  F  HRG +V D VWC   +  ASC  ER +L+W+PFS++    RL G +  +  + +    + L++L  D  ++R WD++   C+Q  + AT
Sbjct:  304 HTDHVTRLAFVTDLNSVVSASRDGSVKVVDVHRGVLKRHFAFHRG-AVYDFVWCGRPKFFASCGVEREILLWSPFSESLLG-RLRGHSCSIKGVVWNEEGQNLISLGLDDGSIRVWDVRQLKCLQTIHDAT 432          
BLAST of mRNA_M-pyrifera_M_contig128580.5740.1 vs. uniprot
Match: A0A067BVH7_SAPPC (EF-hand domain-containing protein (Fragment) n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BVH7_SAPPC)

HSP 1 Score: 92.8 bits (229), Expect = 2.210e-19
Identity = 48/129 (37.21%), Postives = 75/129 (58.14%), Query Frame = 1
Query:    1 HSDEVTCVVLVGDLDAVVSGSRDGTVAVADVARGHVRLRFRGHRGCSVNDVVWCPTDRVLASCAAERTVLVWTPFSDTGSSTRLEGATAPVVKLTYVPWARQLVALSADSTLRAWDLQTCTCVQAFNTA 387
            H+D ++C+  V DL+ +VS S DG+V V D+ RG ++  FR HRG +V    WC   +++ASC  ER VL+W+P+S      RL G T  + ++ +   +  L++L  D  +R WD++ C C Q    A
Sbjct:  287 HTDYISCLEFVSDLNCLVSASHDGSVKVVDITRGALKRDFRQHRG-AVYSFAWCKEPKLIASCGLERQVLLWSPYSIRLVG-RLVGHTCSIKQVIWNAASYSLLSLGFDGLVRVWDVKNCKCNQVIEDA 413          
BLAST of mRNA_M-pyrifera_M_contig128580.5740.1 vs. uniprot
Match: A0A1V9YFR6_9STRA (EF-hand domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YFR6_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 7.880e-19
Identity = 49/129 (37.98%), Postives = 73/129 (56.59%), Query Frame = 1
Query:    1 HSDEVTCVVLVGDLDAVVSGSRDGTVAVADVARGHVRLRFRGHRGCSVNDVVWCPTDRVLASCAAERTVLVWTPFSDTGSSTRLEGATAPVVKLTYVPWARQLVALSADSTLRAWDLQTCTCVQAFNTA 387
            HSD V+CV  V DL+ VVS S DG+V V D+ RG ++  FR H+G +V+   WC   +++ASC  ER +L+W+P+S      RL G T  +  + +      L++L  D  +R WD++   C Q    A
Sbjct:  291 HSDHVSCVAYVADLNCVVSASHDGSVKVVDLTRGTLKRDFRQHKG-AVHAFAWCKEAKLIASCGLERQILLWSPYSIRLVG-RLAGHTGSIKLVLWSSPCASLLSLGFDGLVRVWDIKNGKCCQVIEDA 417          
BLAST of mRNA_M-pyrifera_M_contig128580.5740.1 vs. uniprot
Match: F0WDE1_9STRA (Uncharacterized protein AlNc14C66G4661 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WDE1_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.030e-18
Identity = 44/126 (34.92%), Postives = 75/126 (59.52%), Query Frame = 1
Query:    1 HSDEVTCVVLVGDLDAVVSGSRDGTVAVADVARGHVRLRFRGHRGCSVNDVVWCPTDRVLASCAAERTVLVWTPFSDTGSSTRLEGATAPVVKLTYVPWARQLVALSADSTLRAWDLQTCTCVQAF 378
            HSD +T +  VG++ A+V+GS D T+++ DV R   +  +  H+  SV D++WC + R++ASC  ER + +W P+S   +   L G    V  L      +QL+++S+++  + WDL+T  C+Q F
Sbjct:  349 HSDWITSIKWVGEIQAIVAGSLDSTISIVDVDRMVTKFEYTQHKK-SVFDLIWCSSARLVASCGLERDISIWNPYSCQRAVGMLRGHNTSVSHLASDDTNQQLISVSSENVFKIWDLRTQRCLQTF 473          
BLAST of mRNA_M-pyrifera_M_contig128580.5740.1 vs. uniprot
Match: A0A024G5E2_9STRA (EF-hand domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G5E2_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 3.780e-18
Identity = 43/126 (34.13%), Postives = 75/126 (59.52%), Query Frame = 1
Query:    1 HSDEVTCVVLVGDLDAVVSGSRDGTVAVADVARGHVRLRFRGHRGCSVNDVVWCPTDRVLASCAAERTVLVWTPFSDTGSSTRLEGATAPVVKLTYVPWARQLVALSADSTLRAWDLQTCTCVQAF 378
            HSD +T +  VG++ A+++GS D T+++ DV R   +  +  H+  SV D++WCP+ R++ASC  ER + +W P+S   +   L G    V  L      +QL+++S+++  + WDL+   C+Q F
Sbjct:  361 HSDWITRIKWVGEIQAIIAGSLDSTISIVDVDRMVTKFEYTQHKK-SVYDLIWCPSARLVASCGQERDISIWNPYSCQRAVGILRGHNTSVCHLASDDINQQLISVSSENVFKIWDLRMQRCLQTF 485          
BLAST of mRNA_M-pyrifera_M_contig128580.5740.1 vs. uniprot
Match: A0A250X3I4_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X3I4_9CHLO)

HSP 1 Score: 70.5 bits (171), Expect = 1.480e-11
Identity = 41/124 (33.06%), Postives = 67/124 (54.03%), Query Frame = 1
Query:    1 HSDEVTCVVLVGDLDAVVSGSRDGTVAVADVARGHVRLRFRGHRGCSVNDVVWCPTDRVLASCAAERTVLVWTPFSDTGSSTRLEGATAPVVKLTYVPWARQLVALSADSTLRAWDLQTCTCVQ 372
            HSD VTCV  V DL+ V++GS D  +++ D A   VRL+        V  V W P  + + S A +R +++W PFS    + +L G    V ++       Q+++L +D T++ WD++   C+Q
Sbjct:  366 HSDWVTCVRYVEDLNCVIAGSLDKLISITD-AEERVRLKVLDGHLKGVTSVDWSPIYKFVCSGAQDRKIILWNPFSQRPLA-QLTGHATSVQQVLVNDKDNQIISLGSDKTVKVWDIRNHKCLQ 487          
BLAST of mRNA_M-pyrifera_M_contig128580.5740.1 vs. uniprot
Match: A0A813LVR8_POLGL (Calmodulin n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813LVR8_POLGL)

HSP 1 Score: 70.1 bits (170), Expect = 1.930e-11
Identity = 42/135 (31.11%), Postives = 71/135 (52.59%), Query Frame = 1
Query:    1 HSDEVTCVVLVGDLDAVVSGSRDGTVAVADVARGHVRLRFRGHRGCS-----VNDVVWCPTDRVLASCAAERTVLVWTPFSDTGSSTRLEGATAPVVKLTYVPWARQLVALSADSTLRAWDLQTCTCVQAFNTAT 390
            H+D VT V  V +L A+V+ S DG + + DV   HV  R  G +  S     V+   WC + +  AS  ++R +++W P++    ++ L+G  APV+ +       QL+++S D  ++ WD+    C+Q F   T
Sbjct:  311 HTDWVTKVGFVSELQAMVTCSLDGEINLCDV---HVNQRKEGRQPVSLHKKGVHTWCWCRSYKFFASGGSDRQIIIWNPYTQKAMNS-LQGHNAPVMDVLVNEAQHQLISMSVDKVVKVWDILNYQCIQTFTDKT 441          
BLAST of mRNA_M-pyrifera_M_contig128580.5740.1 vs. uniprot
Match: C1MUU0_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MUU0_MICPC)

HSP 1 Score: 68.2 bits (165), Expect = 9.410e-11
Identity = 47/135 (34.81%), Postives = 69/135 (51.11%), Query Frame = 1
Query:    1 HSDEVTCVVLVGDLDAVVSGSRDGTVAVADVARGH-----VRLRFRGHRGCSVNDVVWCPTDRVLASCAAERTVLVWTPFSDTGSSTR-LEGATAPVVKLTYVPWARQLVALSADSTLRAWDLQTCTCVQAFNTA 387
            H+D    ++ V +L+ VVS S DGT+ V DV+        V++    H    V D  +CP   V ASC   R V++W     TGS    L+G  + V K+      +Q+V++SAD T++ WDL+   CVQ    A
Sbjct:  297 HTDACVKLMHVPELECVVSASNDGTIVVVDVSTVRLNSFRVKMTLEAHPK-GVLDFDYCPAHNVFASCGIGRDVMLW--HGSTGSRLGILKGHVSTVCKVCVDVNLQQVVSVSADKTIKVWDLRNNRCVQTMEDA 428          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128580.5740.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A024UG05_9STRA1.600e-2142.40EF-hand domain-containing protein n=9 Tax=Aphanomy... [more]
T0Q8K2_SAPDV8.990e-2037.21EF-hand domain-containing protein n=2 Tax=Saproleg... [more]
W4GG08_9STRA1.230e-1939.69EF-hand domain-containing protein n=6 Tax=Aphanomy... [more]
A0A067BVH7_SAPPC2.210e-1937.21EF-hand domain-containing protein (Fragment) n=1 T... [more]
A0A1V9YFR6_9STRA7.880e-1937.98EF-hand domain-containing protein n=1 Tax=Achlya h... [more]
F0WDE1_9STRA2.030e-1834.92Uncharacterized protein AlNc14C66G4661 n=1 Tax=Alb... [more]
A0A024G5E2_9STRA3.780e-1834.13EF-hand domain-containing protein n=1 Tax=Albugo c... [more]
A0A250X3I4_9CHLO1.480e-1133.06Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
A0A813LVR8_POLGL1.930e-1131.11Calmodulin n=2 Tax=Polarella glacialis TaxID=89957... [more]
C1MUU0_MICPC9.410e-1134.81Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128580contigM-pyrifera_M_contig128580:105..494 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.6
Seed ortholog evalue2.3e-18
Seed eggNOG ortholog157072.XP_008866773.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.WD repeat-containing protein
EggNOG OGsKOG0266@1,KOG0266@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size390
Cds size390
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815798.7080033-CDS-M-pyrifera_M_contig128580:104..4941622815798.7080033-CDS-M-pyrifera_M_contig128580:104..494Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128580 105..494 +
1692277574.530683-CDS-M-pyrifera_M_contig128580:104..4941692277574.530683-CDS-M-pyrifera_M_contig128580:104..494Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128580 105..494 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128580.5740.1prot_M-pyrifera_M_contig128580.5740.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128580 105..494 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128580.5740.1

>prot_M-pyrifera_M_contig128580.5740.1 ID=prot_M-pyrifera_M_contig128580.5740.1|Name=mRNA_M-pyrifera_M_contig128580.5740.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=130bp
HSDEVTCVVLVGDLDAVVSGSRDGTVAVADVARGHVRLRFRGHRGCSVND
VVWCPTDRVLASCAAERTVLVWTPFSDTGSSTRLEGATAPVVKLTYVPWA
RQLVALSADSTLRAWDLQTCTCVQAFNTAT
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mRNA from alignment at M-pyrifera_M_contig128580:105..494+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128580.5740.1 ID=mRNA_M-pyrifera_M_contig128580.5740.1|Name=mRNA_M-pyrifera_M_contig128580.5740.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig128580:105..494+ (Macrocystis pyrifera P11B4 male)
CACTCCGACGAAGTCACCTGCGTCGTCCTCGTCGGCGATCTAGATGCCGT CGTCAGCGGGTCCAGAGACGGCACCGTCGCCGTCGCCGACGTTGCAAGGG GCCACGTCCGGCTGCGCTTCCGCGGCCACCGCGGCTGCTCCGTCAACGAC GTGGTGTGGTGCCCCACCGACCGGGTGCTGGCCAGCTGCGCCGCAGAGCG CACCGTGCTAGTATGGACACCCTTCTCCGACACGGGCAGCTCGACCCGCC TGGAGGGCGCGACGGCGCCGGTGGTGAAGCTGACGTACGTGCCGTGGGCT CGCCAACTGGTCGCGCTGTCCGCAGACTCCACCCTGCGCGCGTGGGACCT GCAGACCTGCACTTGCGTGCAGGCGTTCAACACCGCCACC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig128580:105..494+

>mRNA_M-pyrifera_M_contig128580.5740.1 ID=mRNA_M-pyrifera_M_contig128580.5740.1|Name=mRNA_M-pyrifera_M_contig128580.5740.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=780bp|location=Sequence derived from alignment at M-pyrifera_M_contig128580:105..494+ (Macrocystis pyrifera P11B4 male)
CACTCCGACGAAGTCACCTGCGTCGTCCTCGTCGGCGATCTAGATGCCGT
CGTCAGCGGGTCCAGAGACGGCACCGTCGCCGTCGCCGACGTTGCAAGGG
GCCACGTCCGGCTGCGCTTCCGCGGCCACCGCGGCTGCTCCGTCAACGAC
GTGGTGTGGTGCCCCACCGACCGGGTGCTGGCCAGCTGCGCCGCAGAGCG
CACCGTGCTAGTATGGACACCCTTCTCCGACACGGGCAGCTCGACCCGCC
TGGAGGGCGCGACGGCGCCGGTGGTGAAGCTGACGTACGTGCCGTGGGCT
CGCCAACTGGTCGCGCTGTCCGCAGACTCCACCCTGCGCGCGTGGGACCT
GCAGACCTGCACTTGCGTGCAGGCGTTCAACACCGCCACCCACTCCGACG
AAGTCACCTGCGTCGTCCTCGTCGGCGATCTAGATGCCGTCGTCAGCGGG
TCCAGAGACGGCACCGTCGCCGTCGCCGACGTTGCAAGGGGCCACGTCCG
GCTGCGCTTCCGCGGCCACCGCGGCTGCTCCGTCAACGACGTGGTGTGGT
GCCCCACCGACCGGGTGCTGGCCAGCTGCGCCGCAGAGCGCACCGTGCTA
GTATGGACACCCTTCTCCGACACGGGCAGCTCGACCCGCCTGGAGGGCGC
GACGGCGCCGGTGGTGAAGCTGACGTACGTGCCGTGGGCTCGCCAACTGG
TCGCGCTGTCCGCAGACTCCACCCTGCGCGCGTGGGACCTGCAGACCTGC
ACTTGCGTGCAGGCGTTCAACACCGCCACC
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