mRNA_M-pyrifera_M_contig128545.5732.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128545.5732.1
Unique NamemRNA_M-pyrifera_M_contig128545.5732.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig128545.5732.1 vs. uniprot
Match: A0A225V6K3_9STRA (Dynamin_N domain-containing protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V6K3_9STRA)

HSP 1 Score: 152 bits (383), Expect = 7.660e-44
Identity = 72/106 (67.92%), Postives = 86/106 (81.13%), Query Frame = 1 
Query:   10 PMVLVLGNHSSGKSTFINHLLGRNVQKTGRAPTDASFTILTQGEHAEFLDGHTLTRNRTYGFHRMDRLFGREFISHIEMKVLPDCRILQEHGLMIVDTPGMIDPPG 327
            PMVLVLGNHSSGKSTFINH+LG++VQKTGRAPTD +FT+L  G   E LDG  L R+  YGF  + RLFGREF+S +E+KV+ D ++L E GLMIVD+PGMIDPPG
Sbjct:   46 PMVLVLGNHSSGKSTFINHMLGQSVQKTGRAPTDCTFTVLAGGPREERLDGAALVRHAQYGFGDVQRLFGREFVSQVELKVVADSQLLDEGGLMIVDSPGMIDPPG 151
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BLAST of mRNA_M-pyrifera_M_contig128545.5732.1 vs. uniprot
Match: A0A3R7AF91_9STRA (Dynamin_N domain-containing protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7AF91_9STRA)

HSP 1 Score: 147 bits (370), Expect = 2.750e-42
Identity = 66/107 (61.68%), Postives = 86/107 (80.37%), Query Frame = 1 
Query:   10 PMVLVLGNHSSGKSTFINHLLGRNVQKTGRAPTDASFTILTQGEHAEFLDGHTLTRNRTYGFHRMDRLFGREFISHIEMKVLPDCRILQEHGLMIVDTPGMIDPPGA 330
            PMVLVLGNHSSGKSTFINH+L ++VQKTGRAPTD  FT+L  G+ AE LDGH L+R+  +GF  +  LFG +F+S +E++VL +C +L   G+MI+D+PGMIDPPG+
Sbjct:   47 PMVLVLGNHSSGKSTFINHMLDQDVQKTGRAPTDCMFTVLMGGKRAERLDGHALSRDNKFGFQDIKGLFGADFVSQVELRVLEECTLLDSTGMMIIDSPGMIDPPGS 153
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BLAST of mRNA_M-pyrifera_M_contig128545.5732.1 vs. uniprot
Match: A0A1V9ZSM1_9STRA (Dynamin_N domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZSM1_9STRA)

HSP 1 Score: 152 bits (383), Expect = 2.140e-41
Identity = 69/109 (63.30%), Postives = 88/109 (80.73%), Query Frame = 1 
Query:    1 VFRPMVLVLGNHSSGKSTFINHLLGRNVQKTGRAPTDASFTILTQGEHAEFLDGHTLTRNRTYGFHRMDRLFGREFISHIEMKVLPDCRILQEHGLMIVDTPGMIDPPG 327
            V  PMVLVLGNHSSGKSTFINH+LG++VQKTGRAPTD +FT++  G+ AE LDG+ L+RN  +GF  +  LFG +F+S +E+K+L  C +L E G+MIVD+PGMIDPPG
Sbjct:   45 VHTPMVLVLGNHSSGKSTFINHMLGQDVQKTGRAPTDCTFTVIAGGKRAERLDGYALSRNNKFGFQDVKALFGADFVSQVELKILEHCDLLDETGMMIVDSPGMIDPPG 153
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BLAST of mRNA_M-pyrifera_M_contig128545.5732.1 vs. uniprot
Match: A0A067C0W6_SAPPC (Dynamin_N domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C0W6_SAPPC)

HSP 1 Score: 150 bits (380), Expect = 5.650e-41
Identity = 68/109 (62.39%), Postives = 89/109 (81.65%), Query Frame = 1 
Query:    1 VFRPMVLVLGNHSSGKSTFINHLLGRNVQKTGRAPTDASFTILTQGEHAEFLDGHTLTRNRTYGFHRMDRLFGREFISHIEMKVLPDCRILQEHGLMIVDTPGMIDPPG 327
            V  PMVLVLGNHSSGKSTFINH+LG++VQKTGRAPTD +FT++  G+ AE LDG+ L+RN  +GF  +  LFG +F+S +E+K+L +C +L E G+MI+D+PGMIDPPG
Sbjct:   45 VHTPMVLVLGNHSSGKSTFINHMLGQDVQKTGRAPTDCTFTVIAGGKRAERLDGYALSRNNKFGFQDIRGLFGADFVSQVELKMLENCDLLDETGMMIIDSPGMIDPPG 153
[Close]
BLAST of mRNA_M-pyrifera_M_contig128545.5732.1 vs. uniprot
Match: A0A1V9ZGS8_9STRA (Dynamin_N domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZGS8_9STRA)

HSP 1 Score: 150 bits (379), Expect = 8.180e-41
Identity = 68/109 (62.39%), Postives = 88/109 (80.73%), Query Frame = 1 
Query:    1 VFRPMVLVLGNHSSGKSTFINHLLGRNVQKTGRAPTDASFTILTQGEHAEFLDGHTLTRNRTYGFHRMDRLFGREFISHIEMKVLPDCRILQEHGLMIVDTPGMIDPPG 327
            V  P+VLVLGNHSSGKSTFINH+LG+++QKTGRAPTD +FT++  G+ AE LDG+ L+RN  +GF  +  LFG +F+S IE+K+L  C +L E G+MIVD+PGMIDPPG
Sbjct:   46 VHTPLVLVLGNHSSGKSTFINHMLGQDIQKTGRAPTDCTFTVIAGGQRAERLDGYALSRNSKFGFQDIKGLFGMDFVSQIELKILDKCPLLDETGMMIVDSPGMIDPPG 154
[Close]
BLAST of mRNA_M-pyrifera_M_contig128545.5732.1 vs. uniprot
Match: A0A3R7JC15_9STRA (Dynamin_N domain-containing protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JC15_9STRA)

HSP 1 Score: 148 bits (374), Expect = 2.400e-40
Identity = 70/106 (66.04%), Postives = 84/106 (79.25%), Query Frame = 1 
Query:   10 PMVLVLGNHSSGKSTFINHLLGRNVQKTGRAPTDASFTILTQGEHAEFLDGHTLTRNRTYGFHRMDRLFGREFISHIEMKVLPDCRILQEHGLMIVDTPGMIDPPG 327
            PMVLVLGNHSSGKSTFINH+LG+NVQKTGRAPTD +FT+L  G   E LDG  L R+  YGF  + RLFGRE +S +E+KV+   ++L E GLM+VD+PGMIDPPG
Sbjct:   51 PMVLVLGNHSSGKSTFINHMLGQNVQKTGRAPTDCTFTVLAGGPREERLDGAALVRHAQYGFGDVQRLFGRELVSQVELKVVAGSQLLDEGGLMVVDSPGMIDPPG 156
[Close]
BLAST of mRNA_M-pyrifera_M_contig128545.5732.1 vs. uniprot
Match: A0A3R6YD63_9STRA (Dynamin_N domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6YD63_9STRA)

HSP 1 Score: 149 bits (377), Expect = 2.730e-40
Identity = 68/107 (63.55%), Postives = 85/107 (79.44%), Query Frame = 1 
Query:   10 PMVLVLGNHSSGKSTFINHLLGRNVQKTGRAPTDASFTILTQGEHAEFLDGHTLTRNRTYGFHRMDRLFGREFISHIEMKVLPDCRILQEHGLMIVDTPGMIDPPGA 330
            PMVLVLGNHSSGKSTFINH+L + VQKTGRAPTD  FT+L  G+ AE LDGH L+R+  +GF  +  LFG +F+S +E+KVL DC +L   G+MI+D+PGMIDPPG+
Sbjct:  155 PMVLVLGNHSSGKSTFINHMLNQEVQKTGRAPTDCMFTVLMGGKRAERLDGHALSRDNKFGFQDIKGLFGADFVSQVELKVLEDCALLDSTGMMIIDSPGMIDPPGS 261
[Close]
BLAST of mRNA_M-pyrifera_M_contig128545.5732.1 vs. uniprot
Match: A0A397DFR0_9STRA (Dynamin_N domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DFR0_9STRA)

HSP 1 Score: 147 bits (370), Expect = 3.640e-40
Identity = 66/107 (61.68%), Postives = 86/107 (80.37%), Query Frame = 1 
Query:   10 PMVLVLGNHSSGKSTFINHLLGRNVQKTGRAPTDASFTILTQGEHAEFLDGHTLTRNRTYGFHRMDRLFGREFISHIEMKVLPDCRILQEHGLMIVDTPGMIDPPGA 330
            PMVLVLGNHSSGKSTFINH+L ++VQKTGRAPTD  FT+L  G+ AE LDGH L+R+  +GF  +  LFG +F+S +E++VL +C +L   G+MI+D+PGMIDPPG+
Sbjct:   47 PMVLVLGNHSSGKSTFINHMLDQDVQKTGRAPTDCMFTVLMGGKRAERLDGHALSRDNKFGFQDIKGLFGADFVSQVELRVLEECSLLDSTGMMIIDSPGMIDPPGS 153
[Close]
BLAST of mRNA_M-pyrifera_M_contig128545.5732.1 vs. uniprot
Match: H3H1T7_PHYRM (Dynamin_N domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H1T7_PHYRM)

HSP 1 Score: 149 bits (375), Expect = 5.050e-40
Identity = 71/106 (66.98%), Postives = 85/106 (80.19%), Query Frame = 1 
Query:   10 PMVLVLGNHSSGKSTFINHLLGRNVQKTGRAPTDASFTILTQGEHAEFLDGHTLTRNRTYGFHRMDRLFGREFISHIEMKVLPDCRILQEHGLMIVDTPGMIDPPG 327
            PMVLVLGNHSSGKSTFINH+LG++VQKTGRAPTD +FT+L  G   E LDG  L R+  YGF  + RLFGREF+S +E+KV+   ++L E GLMIVD+PGMIDPPG
Sbjct:   49 PMVLVLGNHSSGKSTFINHMLGQSVQKTGRAPTDCTFTVLAGGARDERLDGAALVRHAQYGFGDVQRLFGREFVSQVELKVVAGSQLLDEGGLMIVDSPGMIDPPG 154
[Close]
BLAST of mRNA_M-pyrifera_M_contig128545.5732.1 vs. uniprot
Match: A0A6A4ZVS2_9STRA (Dynamin_N domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZVS2_9STRA)

HSP 1 Score: 147 bits (370), Expect = 7.340e-40
Identity = 66/107 (61.68%), Postives = 86/107 (80.37%), Query Frame = 1 
Query:   10 PMVLVLGNHSSGKSTFINHLLGRNVQKTGRAPTDASFTILTQGEHAEFLDGHTLTRNRTYGFHRMDRLFGREFISHIEMKVLPDCRILQEHGLMIVDTPGMIDPPGA 330
            PMVLVLGNHSSGKSTFINH+L ++VQKTGRAPTD  FT+L  G+ AE LDGH L+R+  +GF  +  LFG +F+S +E++VL +C +L   G+MI+D+PGMIDPPG+
Sbjct:   47 PMVLVLGNHSSGKSTFINHMLDQDVQKTGRAPTDCMFTVLMGGKRAERLDGHALSRDNKFGFQDIKGLFGADFVSQVELRVLEECTLLDSTGMMIIDSPGMIDPPGS 153
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128545.5732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A225V6K3_9STRA7.660e-4467.92Dynamin_N domain-containing protein (Fragment) n=1... [more]
A0A3R7AF91_9STRA2.750e-4261.68Dynamin_N domain-containing protein (Fragment) n=2... [more]
A0A1V9ZSM1_9STRA2.140e-4163.30Dynamin_N domain-containing protein n=1 Tax=Achlya... [more]
A0A067C0W6_SAPPC5.650e-4162.39Dynamin_N domain-containing protein n=2 Tax=Saprol... [more]
A0A1V9ZGS8_9STRA8.180e-4162.39Dynamin_N domain-containing protein n=1 Tax=Thraus... [more]
A0A3R7JC15_9STRA2.400e-4066.04Dynamin_N domain-containing protein n=4 Tax=Phytop... [more]
A0A3R6YD63_9STRA2.730e-4063.55Dynamin_N domain-containing protein n=1 Tax=Aphano... [more]
A0A397DFR0_9STRA3.640e-4061.68Dynamin_N domain-containing protein n=2 Tax=Aphano... [more]
H3H1T7_PHYRM5.050e-4066.98Dynamin_N domain-containing protein n=1 Tax=Phytop... [more]
A0A6A4ZVS2_9STRA7.340e-4061.68Dynamin_N domain-containing protein n=1 Tax=Aphano... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128545contigM-pyrifera_M_contig128545:111..499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score148.3
Seed ortholog evalue2e-33
Seed eggNOG ortholog112098.XP_008620887.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.endocytic recycling
EggNOG OGsKOG1954@1,KOG1954@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size330
Cds size318
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128545.5732.1prot_M-pyrifera_M_contig128545.5732.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128545 123..499 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815798.1748292-UTR-M-pyrifera_M_contig128545:110..1221622815798.1748292-UTR-M-pyrifera_M_contig128545:110..122Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig128545 111..122 +
1692277574.381055-UTR-M-pyrifera_M_contig128545:110..1221692277574.381055-UTR-M-pyrifera_M_contig128545:110..122Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig128545 111..122 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815798.1888936-CDS-M-pyrifera_M_contig128545:122..3631622815798.1888936-CDS-M-pyrifera_M_contig128545:122..363Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128545 123..363 +
1692277574.3925111-CDS-M-pyrifera_M_contig128545:122..3631692277574.3925111-CDS-M-pyrifera_M_contig128545:122..363Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128545 123..363 +
1622815798.1995223-CDS-M-pyrifera_M_contig128545:422..4991622815798.1995223-CDS-M-pyrifera_M_contig128545:422..499Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128545 423..499 +
1692277574.40259-CDS-M-pyrifera_M_contig128545:422..4991692277574.40259-CDS-M-pyrifera_M_contig128545:422..499Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128545 423..499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128545.5732.1

>prot_M-pyrifera_M_contig128545.5732.1 ID=prot_M-pyrifera_M_contig128545.5732.1|Name=mRNA_M-pyrifera_M_contig128545.5732.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
MVLVLGNHSSGKSTFINHLLGRNVQKTGRAPTDASFTILTQGEHAEFLDG
HTLTRNRTYGFHRMDRLFGREFISHIEMKVLPDCRILQEHGLMIVDTPGM
IDPPGA
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mRNA from alignment at M-pyrifera_M_contig128545:111..499+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128545.5732.1 ID=mRNA_M-pyrifera_M_contig128545.5732.1|Name=mRNA_M-pyrifera_M_contig128545.5732.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=389bp|location=Sequence derived from alignment at M-pyrifera_M_contig128545:111..499+ (Macrocystis pyrifera P11B4 male)
GTGTTTCGGCCCATGGTGCTGGTGCTGGGCAACCACTCGAGCGGGAAGAG
CACGTTCATCAACCATCTGTTGGGTCGGAACGTACAGAAGACTGGGCGTG
CGCCCACGGATGCGTCGTTCACCATCCTCACGCAGGGCGAGCACGCCGAG
TTCCTGGACGGACACACGCTCACTCGCAACCGCACGTACGGCTTCCACCG
CATGGACCGCCTGTTCGGCCGCGAGTTCATCTCGCACATCGAGATGAAGG
TGCGTCTCTGCCGCCCGGCGTGCTCACAGCGAACGTTCCTCTCACGCGTT
GCTCGCAGCAAGTGCCGGACTGTCGAATCCTGCAGGAGCACGGCCTGATG
ATCGTGGACACGCCTGGGATGATCGACCCGCCCGGCGCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig128545:111..499+

>mRNA_M-pyrifera_M_contig128545.5732.1 ID=mRNA_M-pyrifera_M_contig128545.5732.1|Name=mRNA_M-pyrifera_M_contig128545.5732.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig128545:111..499+ (Macrocystis pyrifera P11B4 male)
ATGGTGCTGGTGCTGGGCAACCACTCGAGCGGGAAGAGCACGTTCATCAA
CCATCTGTTGGGTCGGAACGTACAGAAGACTGGGCGTGCGCCCACGGATG
CGTCGTTCACCATCCTCACGCAGGGCGAGCACGCCGAGTTCCTGGACGGA
CACACGCTCACTCGCAACCGCACGTACGGCTTCCACCGCATGGACCGCCT
GTTCGGCCGCGAGTTCATCTCGCACATCGAGATGAAGGTGCATGGTGCTG
GTGCTGGGCAACCACTCGAGCGGGAAGAGCACGTTCATCAACCATCTGTT
GGGTCGGAACGTACAGAAGACTGGGCGTGCGCCCACGGATGCGTCGTTCA
CCATCCTCACGCAGGGCGAGCACGCCGAGTTCCTGGACGGACACACGCTC
ACTCGCAACCGCACGTACGGCTTCCACCGCATGGACCGCCTGTTCGGCCG
CGAGTTCATCTCGCACATCGAGATGAAGGTGCTGCCGGACTGTCGAATCC
TGCAGGAGCACGGCCTGATGATCGTGGACACGCCTGGGATGATCGACCCG
CCCGGCGCTTGCCGGACTGTCGAATCCTGCAGGAGCACGGCCTGATGATC
GTGGACACGCCTGGGATGATCGACCCGCCCGGCGCT
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