mRNA_M-pyrifera_M_contig128541.5730.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128541.5730.1
Unique NamemRNA_M-pyrifera_M_contig128541.5730.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig128541.5730.1 vs. uniprot
Match: A0A7X9KGK6_9ACTN (Nitroreductase family protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X9KGK6_9ACTN)

HSP 1 Score: 174 bits (441), Expect = 8.690e-53
Identity = 84/111 (75.68%), Postives = 96/111 (86.49%), Query Frame = 1
Query:   13 KHPAIIVACAELSETHPTDTDLGRLSIVGGASVYPMVQNLCLALRNEGVATTLTTLLCLFEPQVKELLGIPEEYATAAHIVAGYPSKPFPTKLTRRPVEEIAFMDSFDNPL 345
            +HPAI++  A+L +THPTDTDLGRLSIVGGASVY + QN CLALR++GVATTLTTLLC+FEPQVKEL  IPE  +TAA IVAGYP K FPTKL RRPVEE+AF+DSFD PL
Sbjct:  114 EHPAIVIVLADLEDTHPTDTDLGRLSIVGGASVYTVAQNFCLALRDQGVATTLTTLLCMFEPQVKELFNIPENLSTAAFIVAGYPEKSFPTKLFRRPVEEMAFLDSFDRPL 224          
BLAST of mRNA_M-pyrifera_M_contig128541.5730.1 vs. uniprot
Match: UPI000E312A01 (nitroreductase family protein n=1 Tax=Euzebya tangerina TaxID=591198 RepID=UPI000E312A01)

HSP 1 Score: 171 bits (432), Expect = 1.840e-51
Identity = 84/115 (73.04%), Postives = 96/115 (83.48%), Query Frame = 1
Query:    1 QNLEKHPAIIVACAELSETHPTDTDLGRLSIVGGASVYPMVQNLCLALRNEGVATTLTTLLCLFEPQVKELLGIPEEYATAAHIVAGYPSKPFPTKLTRRPVEEIAFMDSFDNPL 345
            +N+  HPAII+ACA+LSETHPTDTDLGRLS+VGGAS+YP VQNL LALR EGVATT TTLL +FE QVKELL IP+  ATA H+ AGYP   FP+ LTR PVEEIAFM++FD PL
Sbjct:  108 ENIPNHPAIIIACADLSETHPTDTDLGRLSVVGGASIYPTVQNLALALRAEGVATTWTTLLVMFEEQVKELLDIPDHLATACHLFAGYPRDGFPSTLTRLPVEEIAFMENFDTPL 222          
BLAST of mRNA_M-pyrifera_M_contig128541.5730.1 vs. uniprot
Match: A0A7K0JPF6_9ACTN (Oxidoreductase n=1 Tax=Acidiferrimicrobium australe TaxID=2664430 RepID=A0A7K0JPF6_9ACTN)

HSP 1 Score: 167 bits (422), Expect = 8.080e-50
Identity = 80/115 (69.57%), Postives = 94/115 (81.74%), Query Frame = 1
Query:    1 QNLEKHPAIIVACAELSETHPTDTDLGRLSIVGGASVYPMVQNLCLALRNEGVATTLTTLLCLFEPQVKELLGIPEEYATAAHIVAGYPSKPFPTKLTRRPVEEIAFMDSFDNPL 345
            ++  +HP IIV CA+++ THPTDT+LGRLSIVGG SVYP  QNLCLALR  GVATT TTLLC FEPQVKELLGIP E+ATAAHIVAGYP+  FPT+L R PVEE+  +D++  PL
Sbjct:  112 EHFGEHPVIIVVCADIANTHPTDTELGRLSIVGGGSVYPQAQNLCLALRARGVATTFTTLLCAFEPQVKELLGIPAEWATAAHIVAGYPANGFPTRLNRLPVEELVSVDTWGQPL 226          
BLAST of mRNA_M-pyrifera_M_contig128541.5730.1 vs. uniprot
Match: A0A5M3W964_9ACTN (Nitroreductase n=2 Tax=Acrocarpospora corrugata TaxID=35763 RepID=A0A5M3W964_9ACTN)

HSP 1 Score: 162 bits (409), Expect = 1.800e-48
Identity = 75/115 (65.22%), Postives = 96/115 (83.48%), Query Frame = 1
Query:    1 QNLEKHPAIIVACAELSETHPTDTDLGRLSIVGGASVYPMVQNLCLALRNEGVATTLTTLLCLFEPQVKELLGIPEEYATAAHIVAGYPSKPFPTKLTRRPVEEIAFMDSFDNPL 345
            ++L++ PAI+V CA+L   HPTDT+LGRLS+VGGAS+YP  QN CLALR+ GVA+ +TTLLC +EPQVKELLGIP+   TAAHI  GYP++PFPT+L+R PVEEIAF +++ NPL
Sbjct:   72 EHLDEAPAIVVCCAQLDGLHPTDTELGRLSVVGGASIYPTAQNFCLALRSHGVASAITTLLCHYEPQVKELLGIPDGVITAAHIAVGYPAEPFPTRLSRIPVEEIAFSNAYGNPL 186          
BLAST of mRNA_M-pyrifera_M_contig128541.5730.1 vs. uniprot
Match: A0A6M6JH30_9PSEU (Nitroreductase family protein n=2 Tax=Pseudonocardia TaxID=1847 RepID=A0A6M6JH30_9PSEU)

HSP 1 Score: 162 bits (411), Expect = 1.960e-48
Identity = 77/115 (66.96%), Postives = 93/115 (80.87%), Query Frame = 1
Query:    1 QNLEKHPAIIVACAELSETHPTDTDLGRLSIVGGASVYPMVQNLCLALRNEGVATTLTTLLCLFEPQVKELLGIPEEYATAAHIVAGYPSKPFPTKLTRRPVEEIAFMDSFDNPL 345
            ++L + PAI+VACAEL   HPTDT+LGRLS+VGG S+YP VQNLCLALR++GV T  TTLLC+ EP+V+ELL IPE + TAAHI  GYP KPFPTKLTR PV+EI + +SF  PL
Sbjct:   96 EHLAEVPAIVVACAELDGLHPTDTELGRLSVVGGGSIYPTVQNLCLALRDQGVGTAFTTLLCIEEPKVRELLAIPEGFITAAHIAVGYPEKPFPTKLTRTPVDEIVYAESFAKPL 210          
BLAST of mRNA_M-pyrifera_M_contig128541.5730.1 vs. uniprot
Match: A0A7G7MAY7_9PSEU (Nitroreductase family protein n=2 Tax=Pseudonocardia TaxID=1847 RepID=A0A7G7MAY7_9PSEU)

HSP 1 Score: 160 bits (406), Expect = 1.160e-47
Identity = 78/115 (67.83%), Postives = 88/115 (76.52%), Query Frame = 1
Query:    1 QNLEKHPAIIVACAELSETHPTDTDLGRLSIVGGASVYPMVQNLCLALRNEGVATTLTTLLCLFEPQVKELLGIPEEYATAAHIVAGYPSKPFPTKLTRRPVEEIAFMDSFDNPL 345
            +NL   PAI+VACAEL   HPTDT L RLS+VGG S+YP VQNLCLALRNEGV T  TTLLC+ EP V+ELL IPE + TA HI  GYP +PFPTKLTR PVEEI + +SF  PL
Sbjct:   96 ENLATVPAIVVACAELDGLHPTDTGLDRLSVVGGGSIYPTVQNLCLALRNEGVGTAFTTLLCITEPAVRELLSIPEGFITAGHIAIGYPERPFPTKLTRMPVEEIVYAESFARPL 210          
BLAST of mRNA_M-pyrifera_M_contig128541.5730.1 vs. uniprot
Match: A0A1Q4DWE9_9PSEU (Oxidoreductase n=1 Tax=Pseudonocardia sp. 73-21 TaxID=1895809 RepID=A0A1Q4DWE9_9PSEU)

HSP 1 Score: 160 bits (404), Expect = 2.260e-47
Identity = 75/114 (65.79%), Postives = 92/114 (80.70%), Query Frame = 1
Query:    1 QNLEKHPAIIVACAELSETHPTDTDLGRLSIVGGASVYPMVQNLCLALRNEGVATTLTTLLCLFEPQVKELLGIPEEYATAAHIVAGYPSKPFPTKLTRRPVEEIAFMDSFDNP 342
            +NL   PAI+VACAEL+  HPTD +LGRLS+VGG S+YP VQNLCLALR++GVAT  TTLLC+ EP V+ELL IP+++ TA HI  GYP++ FPTKLTR PVEEI F ++FD P
Sbjct:   96 ENLATVPAIVVACAELAGLHPTDNELGRLSVVGGGSIYPTVQNLCLALRDQGVATAFTTLLCITEPAVRELLHIPDDFITAGHIAVGYPARGFPTKLTRSPVEEIVFSETFDRP 209          
BLAST of mRNA_M-pyrifera_M_contig128541.5730.1 vs. uniprot
Match: UPI000B4BD122 (nitroreductase family protein n=2 Tax=unclassified Kineosporia TaxID=2626061 RepID=UPI000B4BD122)

HSP 1 Score: 159 bits (403), Expect = 3.600e-47
Identity = 76/115 (66.09%), Postives = 94/115 (81.74%), Query Frame = 1
Query:    1 QNLEKHPAIIVACAELSETHPTDTDLGRLSIVGGASVYPMVQNLCLALRNEGVATTLTTLLCLFEPQVKELLGIPEEYATAAHIVAGYPSKPFPTKLTRRPVEEIAFMDSFDNPL 345
            +NL K PAIIV CAE++  HPTDT+LGRLS+VGG S+YP +QNLCLALR++GVAT +TTLLCL EP V ELL IPE + TAAHI  GYP+K FPTKLTR PVE+I  +++F +P+
Sbjct:   96 ENLHKVPAIIVVCAEMAGLHPTDTELGRLSVVGGCSIYPTMQNLCLALRDQGVATAVTTLLCLSEPAVTELLEIPEGFITAAHIAVGYPAKGFPTKLTRSPVEDIVHLETFGSPM 210          
BLAST of mRNA_M-pyrifera_M_contig128541.5730.1 vs. uniprot
Match: A0A7J9XTJ2_9PSEU (Oxidoreductase n=1 Tax=Pseudonocardiaceae bacterium TaxID=1873463 RepID=A0A7J9XTJ2_9PSEU)

HSP 1 Score: 159 bits (401), Expect = 7.440e-47
Identity = 73/115 (63.48%), Postives = 95/115 (82.61%), Query Frame = 1
Query:    1 QNLEKHPAIIVACAELSETHPTDTDLGRLSIVGGASVYPMVQNLCLALRNEGVATTLTTLLCLFEPQVKELLGIPEEYATAAHIVAGYPSKPFPTKLTRRPVEEIAFMDSFDNPL 345
            +NL   PAI+V CAEL+  HPTDT+LGRLS+VGGAS+YP +QN+CLALR +GVA+ +TTLLC  EPQV+ELLG+P+ + TAAH+V GYP + FPT+LTRRPVE+I  ++ FD P+
Sbjct:   96 ENLATVPAILVLCAELAGLHPTDTELGRLSVVGGASIYPTMQNVCLALREQGVASAITTLLCHQEPQVRELLGLPDGFITAAHVVVGYPERGFPTRLTRRPVEDIVSLEHFDTPM 210          
BLAST of mRNA_M-pyrifera_M_contig128541.5730.1 vs. uniprot
Match: A1SET7_NOCSJ (Nitroreductase n=1 Tax=Nocardioides sp. (strain ATCC BAA-499 / JS614) TaxID=196162 RepID=A1SET7_NOCSJ)

HSP 1 Score: 159 bits (402), Expect = 7.660e-47
Identity = 74/115 (64.35%), Postives = 90/115 (78.26%), Query Frame = 1
Query:    1 QNLEKHPAIIVACAELSETHPTDTDLGRLSIVGGASVYPMVQNLCLALRNEGVATTLTTLLCLFEPQVKELLGIPEEYATAAHIVAGYPSKPFPTKLTRRPVEEIAFMDSFDNPL 345
            ++   HP I V C +L  THPTDT+L RLS+VGGAS+YP  QN CLALR+ G+ATT TTLL  +EPQVKELL IPEE+ TA HIVAGYP+KPFPTKL R   EE+A++D+F NP+
Sbjct:  112 EHFADHPVIAVVCGDLGATHPTDTELDRLSVVGGASIYPTAQNFCLALRDAGIATTFTTLLVAYEPQVKELLNIPEEFITACHIVAGYPAKPFPTKLNRLAPEEMAYIDTFGNPI 226          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128541.5730.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X9KGK6_9ACTN8.690e-5375.68Nitroreductase family protein n=1 Tax=Actinomyceti... [more]
UPI000E312A011.840e-5173.04nitroreductase family protein n=1 Tax=Euzebya tang... [more]
A0A7K0JPF6_9ACTN8.080e-5069.57Oxidoreductase n=1 Tax=Acidiferrimicrobium austral... [more]
A0A5M3W964_9ACTN1.800e-4865.22Nitroreductase n=2 Tax=Acrocarpospora corrugata Ta... [more]
A0A6M6JH30_9PSEU1.960e-4866.96Nitroreductase family protein n=2 Tax=Pseudonocard... [more]
A0A7G7MAY7_9PSEU1.160e-4767.83Nitroreductase family protein n=2 Tax=Pseudonocard... [more]
A0A1Q4DWE9_9PSEU2.260e-4765.79Oxidoreductase n=1 Tax=Pseudonocardia sp. 73-21 Ta... [more]
UPI000B4BD1223.600e-4766.09nitroreductase family protein n=2 Tax=unclassified... [more]
A0A7J9XTJ2_9PSEU7.440e-4763.48Oxidoreductase n=1 Tax=Pseudonocardiaceae bacteriu... [more]
A1SET7_NOCSJ7.660e-4764.35Nitroreductase n=1 Tax=Nocardioides sp. (strain AT... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128541contigM-pyrifera_M_contig128541:3..356 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score162.9
Seed ortholog evalue8.9e-38
Seed eggNOG ortholog196162.Noca_0797
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Nitroreductase
EggNOG OGs2GKG5@201174,COG0778@1,COG0778@2
COG Functional cat.C
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size354
Cds size354
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815798.112038-CDS-M-pyrifera_M_contig128541:2..3561622815798.112038-CDS-M-pyrifera_M_contig128541:2..356Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128541 3..356 +
1692277574.351862-CDS-M-pyrifera_M_contig128541:2..3561692277574.351862-CDS-M-pyrifera_M_contig128541:2..356Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128541 3..356 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128541.5730.1prot_M-pyrifera_M_contig128541.5730.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128541 3..356 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128541.5730.1

>prot_M-pyrifera_M_contig128541.5730.1 ID=prot_M-pyrifera_M_contig128541.5730.1|Name=mRNA_M-pyrifera_M_contig128541.5730.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=118bp
QNLEKHPAIIVACAELSETHPTDTDLGRLSIVGGASVYPMVQNLCLALRN
EGVATTLTTLLCLFEPQVKELLGIPEEYATAAHIVAGYPSKPFPTKLTRR
PVEEIAFMDSFDNPLVG*
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mRNA from alignment at M-pyrifera_M_contig128541:3..356+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128541.5730.1 ID=mRNA_M-pyrifera_M_contig128541.5730.1|Name=mRNA_M-pyrifera_M_contig128541.5730.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig128541:3..356+ (Macrocystis pyrifera P11B4 male)
CAGAACTTGGAGAAGCACCCGGCGATCATCGTCGCCTGCGCCGAACTCTC CGAGACCCATCCGACCGACACCGATCTCGGCCGTCTCTCGATCGTCGGCG GTGCATCGGTGTATCCGATGGTGCAGAACCTCTGCCTGGCCTTGCGGAAC GAGGGGGTGGCAACGACGCTGACCACCCTGCTCTGCTTGTTCGAGCCGCA GGTGAAGGAGCTTCTGGGAATCCCCGAGGAGTACGCGACGGCGGCCCACA TCGTCGCCGGCTACCCGTCGAAGCCGTTCCCGACCAAGCTGACTCGTCGC CCGGTCGAGGAGATCGCCTTCATGGACAGCTTCGACAACCCACTCGTCGG CTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig128541:3..356+

>mRNA_M-pyrifera_M_contig128541.5730.1 ID=mRNA_M-pyrifera_M_contig128541.5730.1|Name=mRNA_M-pyrifera_M_contig128541.5730.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=708bp|location=Sequence derived from alignment at M-pyrifera_M_contig128541:3..356+ (Macrocystis pyrifera P11B4 male)
CAGAACTTGGAGAAGCACCCGGCGATCATCGTCGCCTGCGCCGAACTCTC
CGAGACCCATCCGACCGACACCGATCTCGGCCGTCTCTCGATCGTCGGCG
GTGCATCGGTGTATCCGATGGTGCAGAACCTCTGCCTGGCCTTGCGGAAC
GAGGGGGTGGCAACGACGCTGACCACCCTGCTCTGCTTGTTCGAGCCGCA
GGTGAAGGAGCTTCTGGGAATCCCCGAGGAGTACGCGACGGCGGCCCACA
TCGTCGCCGGCTACCCGTCGAAGCCGTTCCCGACCAAGCTGACTCGTCGC
CCGGTCGAGGAGATCGCCTTCATGGACAGCTTCGACAACCCACTCGTCGG
CTGACAGAACTTGGAGAAGCACCCGGCGATCATCGTCGCCTGCGCCGAAC
TCTCCGAGACCCATCCGACCGACACCGATCTCGGCCGTCTCTCGATCGTC
GGCGGTGCATCGGTGTATCCGATGGTGCAGAACCTCTGCCTGGCCTTGCG
GAACGAGGGGGTGGCAACGACGCTGACCACCCTGCTCTGCTTGTTCGAGC
CGCAGGTGAAGGAGCTTCTGGGAATCCCCGAGGAGTACGCGACGGCGGCC
CACATCGTCGCCGGCTACCCGTCGAAGCCGTTCCCGACCAAGCTGACTCG
TCGCCCGGTCGAGGAGATCGCCTTCATGGACAGCTTCGACAACCCACTCG
TCGGCTGA
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