mRNA_M-pyrifera_M_contig12842.5708.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12842.5708.1
Unique NamemRNA_M-pyrifera_M_contig12842.5708.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12842.5708.1 vs. uniprot
Match: A0A6H5L508_9PHAE (BTB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L508_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 2.260e-12
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    1 QVEGLSGVTVVAVACGAFHSLAVTSSGRLYEWGLIHTEPDVVAEQ 135
            +V  LS VTV  VACGAFHSLAVTSSG LYEWGLIH++PD  AE+
Sbjct:  119 KVGSLSNVTVTRVACGAFHSLAVTSSGTLYEWGLIHSDPDWTAEK 163
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BLAST of mRNA_M-pyrifera_M_contig12842.5708.1 vs. uniprot
Match: UPI0020263D5F (E3 ISG15--protein ligase Herc6-like n=1 Tax=Sphaerodactylus townsendi TaxID=933632 RepID=UPI0020263D5F)

HSP 1 Score: 48.5 bits (114), Expect = 4.590e-5
Identity = 30/81 (37.04%), Postives = 46/81 (56.79%), Query Frame = 1 
Query:    1 QVEGLSGVTVVAVACGAFHSLAVTSSGRLYEWGL-IHTEPDVVAEQVGYLRP---VRLDGIHLA-------HDKSLAVLQV 210
            +++GLS   V+ VACG +HS+A+T  GR++ WG  I+ +  +  E   + RP     LDGI LA       H  +L++L V
Sbjct:   44 KIDGLSTFKVIQVACGHYHSIALTKDGRVFSWGQNIYGQLGIGKEVSSHGRPQHVTALDGIPLAQVAAGGAHSFALSLLGV 124
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BLAST of mRNA_M-pyrifera_M_contig12842.5708.1 vs. uniprot
Match: W4FMF9_9STRA (VPS9 domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FMF9_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 6.660e-5
Identity = 21/32 (65.62%), Postives = 26/32 (81.25%), Query Frame = 1 
Query:    4 VEGLSGVTVVAVACGAFHSLAVTSSGRLYEWG 99
            ++ L GV + AVACGA HSLAVTSSG++Y WG
Sbjct:  569 IDALCGVYISAVACGAVHSLAVTSSGQVYSWG 600
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12842.5708.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L508_9PHAE2.260e-1273.33BTB domain-containing protein n=2 Tax=Ectocarpus T... [more]
UPI0020263D5F4.590e-537.04E3 ISG15--protein ligase Herc6-like n=1 Tax=Sphaer... [more]
W4FMF9_9STRA6.660e-565.63VPS9 domain-containing protein n=2 Tax=Aphanomyces... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12842contigM-pyrifera_M_contig12842:1235..1450 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.8
Seed ortholog evalue7.4e-11
Seed eggNOG ortholog2880.D8LSA5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size216
Cds size216
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815797.1588433-CDS-M-pyrifera_M_contig12842:1234..14501622815797.1588433-CDS-M-pyrifera_M_contig12842:1234..1450Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12842 1235..1450 -
1692277573.9865508-CDS-M-pyrifera_M_contig12842:1234..14501692277573.9865508-CDS-M-pyrifera_M_contig12842:1234..1450Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12842 1235..1450 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12842.5708.1prot_M-pyrifera_M_contig12842.5708.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12842 1235..1450 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12842.5708.1

>prot_M-pyrifera_M_contig12842.5708.1 ID=prot_M-pyrifera_M_contig12842.5708.1|Name=mRNA_M-pyrifera_M_contig12842.5708.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=72bp
QVEGLSGVTVVAVACGAFHSLAVTSSGRLYEWGLIHTEPDVVAEQVGYLR
PVRLDGIHLAHDKSLAVLQVL*
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mRNA from alignment at M-pyrifera_M_contig12842:1235..1450-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12842.5708.1 ID=mRNA_M-pyrifera_M_contig12842.5708.1|Name=mRNA_M-pyrifera_M_contig12842.5708.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=216bp|location=Sequence derived from alignment at M-pyrifera_M_contig12842:1235..1450- (Macrocystis pyrifera P11B4 male)
CAGGTCGAAGGACTCTCGGGTGTGACGGTGGTCGCCGTGGCCTGCGGGGC
CTTCCACTCCCTGGCGGTGACATCGTCCGGCCGGCTGTACGAGTGGGGAT
TGATCCACACGGAACCCGACGTGGTCGCAGAGCAGGTAGGTTATCTCCGC
CCAGTGAGATTGGACGGGATCCACCTCGCACATGATAAAAGCTTAGCGGT
GTTACAAGTATTATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12842:1235..1450-

>mRNA_M-pyrifera_M_contig12842.5708.1 ID=mRNA_M-pyrifera_M_contig12842.5708.1|Name=mRNA_M-pyrifera_M_contig12842.5708.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig12842:1235..1450- (Macrocystis pyrifera P11B4 male)
CAGGTCGAAGGACTCTCGGGTGTGACGGTGGTCGCCGTGGCCTGCGGGGC
CTTCCACTCCCTGGCGGTGACATCGTCCGGCCGGCTGTACGAGTGGGGAT
TGATCCACACGGAACCCGACGTGGTCGCAGAGCAGGTAGGTTATCTCCGC
CCAGTGAGATTGGACGGGATCCACCTCGCACATGATAAAAGCTTAGCGGT
GTTACAAGTATTATGACAGGTCGAAGGACTCTCGGGTGTGACGGTGGTCG
CCGTGGCCTGCGGGGCCTTCCACTCCCTGGCGGTGACATCGTCCGGCCGG
CTGTACGAGTGGGGATTGATCCACACGGAACCCGACGTGGTCGCAGAGCA
GGTAGGTTATCTCCGCCCAGTGAGATTGGACGGGATCCACCTCGCACATG
ATAAAAGCTTAGCGGTGTTACAAGTATTATGA
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