mRNA_M-pyrifera_M_contig128406.5705.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128406.5705.1
Unique NamemRNA_M-pyrifera_M_contig128406.5705.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig128406.5705.1 vs. uniprot
Match: A0A7S4M724_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4M724_9EUKA)

HSP 1 Score: 106 bits (264), Expect = 5.550e-25
Identity = 46/83 (55.42%), Postives = 64/83 (77.11%), Query Frame = 1
Query:    1 LADLASEMMSPTDGVPVKTRKYLLKSYPSSFLGSEAVSWLAKRKDCSKPAALALGNQLFKAGLIHHSVDKSKPLLDGFFFYRF 249
            L +LA++M++   G+ +K R+Y L++Y   F+GS+ + WL K K CS+P ALALGN+L KAGLIHH+VD +KPLLDG+FFY F
Sbjct:   14 LEELATQMLAYDSGLEIKNRRYFLRTYQDCFIGSQLLDWLIKYKQCSRPTALALGNELVKAGLIHHTVDLTKPLLDGYFFYVF 96          
BLAST of mRNA_M-pyrifera_M_contig128406.5705.1 vs. uniprot
Match: UPI001CEC968A (hypothetical protein n=1 Tax=Leptolyngbya sp. PCC 7375 TaxID=102129 RepID=UPI001CEC968A)

HSP 1 Score: 70.1 bits (170), Expect = 4.250e-14
Identity = 32/75 (42.67%), Postives = 48/75 (64.00%), Query Frame = 1
Query:   25 MSPTDGVPVKTRKYLLKSYPSSFLGSEAVSWLAKRKDCSKPAALALGNQLFKAGLIHHSVDKSKPLLDGFFFYRF 249
            M   DG+ ++ R++ L  YP+ F+GSEAV+WLAK ++ ++ AA  +G  L + GL HH  D+  P  D + FYRF
Sbjct:    1 MRSEDGLDIQNRRFRLTVYPNCFVGSEAVTWLAKTQNATREAAARIGQALVEQGLFHHVTDEH-PFKDEYLFYRF 74          
BLAST of mRNA_M-pyrifera_M_contig128406.5705.1 vs. uniprot
Match: A0A6I5PMY4_9CYAN (Mechanosensitive ion channel n=1 Tax=Leptolyngbya sp. SIO3F4 TaxID=2607780 RepID=A0A6I5PMY4_9CYAN)

HSP 1 Score: 73.9 bits (180), Expect = 1.550e-13
Identity = 33/77 (42.86%), Postives = 51/77 (66.23%), Query Frame = 1
Query:   19 EMMSPTDGVPVKTRKYLLKSYPSSFLGSEAVSWLAKRKDCSKPAALALGNQLFKAGLIHHSVDKSKPLLDGFFFYRF 249
            + M  +DGV +K R++ L  YP  F+GSEAV+WLAK ++ ++ AA+ +G  L + G++HH  D+  P  D + FYRF
Sbjct:  572 QQMRSSDGVAIKDRRFRLTVYPHCFVGSEAVTWLAKTQNATREAAVRIGQALVEQGILHHVTDEH-PFKDEYLFYRF 647          
BLAST of mRNA_M-pyrifera_M_contig128406.5705.1 vs. uniprot
Match: A0A8J7BQM4_9CYAN (Mechanosensitive ion channel n=3 Tax=unclassified Trichocoleus TaxID=2628910 RepID=A0A8J7BQM4_9CYAN)

HSP 1 Score: 72.0 bits (175), Expect = 7.380e-13
Identity = 30/70 (42.86%), Postives = 48/70 (68.57%), Query Frame = 1
Query:   40 GVPVKTRKYLLKSYPSSFLGSEAVSWLAKRKDCSKPAALALGNQLFKAGLIHHSVDKSKPLLDGFFFYRF 249
            G+ ++ R+Y L  YP+ F G+EAV W  + ++C++ AA+ LG  L + G+IHH +D+ +P  DG+ FYRF
Sbjct:  617 GLKIQDRRYRLNLYPACFTGAEAVEWFVQTQNCTREAAIRLGQSLIEQGVIHHVLDE-RPFEDGYVFYRF 685          
BLAST of mRNA_M-pyrifera_M_contig128406.5705.1 vs. uniprot
Match: A0A2N2TXN8_9PROT (DEP domain-containing protein n=1 Tax=Betaproteobacteria bacterium HGW-Betaproteobacteria-14 TaxID=2013705 RepID=A0A2N2TXN8_9PROT)

HSP 1 Score: 71.2 bits (173), Expect = 1.120e-12
Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = 1
Query:    4 ADLASEMMSPTDGVPVKTRKYLLKSYPSSFLGSEAVSWLAKRKDCSKPAALALGNQLFKAGLIHHSVDKSKPLLDGFFFYR 246
            A+LA+ + +   GV V  R+Y LK YP  F+G EAV WL  R    +  A+ALG  L +AGL+HH+V++ +P  DG FFYR
Sbjct:  177 AELAAALAA---GVKVADRRYRLKKYPECFVGGEAVDWLIGRYRVGRDDAVALGEALRRAGLLHHAVNE-QPFRDGEFFYR 253          
BLAST of mRNA_M-pyrifera_M_contig128406.5705.1 vs. uniprot
Match: UPI0019E42144 (Protein kinase n=1 Tax=Gloeomargaritaceae cyanobacterium C42_A2020_066 TaxID=2747801 RepID=UPI0019E42144)

HSP 1 Score: 71.2 bits (173), Expect = 1.320e-12
Identity = 35/81 (43.21%), Postives = 49/81 (60.49%), Query Frame = 1
Query:    7 DLASEMMSPTDGVPVKTRKYLLKSYPSSFLGSEAVSWLAKRKDCSKPAALALGNQLFKAGLIHHSVDKSKPLLDGFFFYRF 249
            DL + +  P  G  ++ R+YLLK YP +F+GSEA +W+ +     +  A+ LG  L   GLIHH VD +    DGF+FYRF
Sbjct:  326 DLITRLRGP-QGFGIRDRRYLLKVYPRTFVGSEATTWMVRNLGLDRIEAVTLGQALLTRGLIHHVVD-AHSFRDGFYFYRF 404          
BLAST of mRNA_M-pyrifera_M_contig128406.5705.1 vs. uniprot
Match: A0A1X6NPT4_PORUM (Aurora kinase n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NPT4_PORUM)

HSP 1 Score: 68.6 bits (166), Expect = 1.240e-11
Identity = 37/85 (43.53%), Postives = 48/85 (56.47%), Query Frame = 1
Query:    1 LADLA---SEMMSPTDGVPVKTRKYLLKSYPSSFLGSEAVSWLAKRKDCSKPAALALGNQLFKAGLIHHSVDKSKPLLDGFFFYR 246
            +AD A     M     GVPV  R+Y LK+YP +F+GSEAVSW+ K    S  AA+ LG  +  AG+ HH V  +    D + FYR
Sbjct:  638 IADFARVYEAMRDKRSGVPVADRRYRLKTYPRTFVGSEAVSWMVKNLHLSHSAAMELGQDMVNAGVFHH-VCHAHNFKDEYLFYR 721          
BLAST of mRNA_M-pyrifera_M_contig128406.5705.1 vs. uniprot
Match: L8GFA4_ACACA (Protein kinase 2, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GFA4_ACACA)

HSP 1 Score: 67.0 bits (162), Expect = 4.270e-11
Identity = 33/82 (40.24%), Postives = 49/82 (59.76%), Query Frame = 1
Query:    7 DLASEMMSPTDGVPVKTRKYLLKSYPSSFLGSEAVSWLA-KRKDCSKPAALALGNQLFKAGLIHHSVDKSKPLLDGFFFYRF 249
            +L ++M  P  GVPV+ RK+ L++Y   F+GSEAV WL  K K   +  AL++G ++ +     H VD ++   DGF FY F
Sbjct:  177 ELVADMCHPATGVPVRDRKWRLRTYRKCFVGSEAVDWLMLKLKLDDRSDALSVGQEIMRLQYFRHVVDDTRQFEDGFLFYAF 258          
BLAST of mRNA_M-pyrifera_M_contig128406.5705.1 vs. uniprot
Match: UPI001C014D8D (mechanosensitive ion channel n=1 Tax=Leptothoe spongobia TaxID=2651728 RepID=UPI001C014D8D)

HSP 1 Score: 66.2 bits (160), Expect = 7.920e-11
Identity = 29/77 (37.66%), Postives = 50/77 (64.94%), Query Frame = 1
Query:   19 EMMSPTDGVPVKTRKYLLKSYPSSFLGSEAVSWLAKRKDCSKPAALALGNQLFKAGLIHHSVDKSKPLLDGFFFYRF 249
            + M  T G+ ++ R++ L  Y + F+GSEAV+WLA+ ++ ++ AA+ +G  L + G++HH  D+  P  D + FYRF
Sbjct:  584 QQMRTTGGLEIQDRRFRLTVYANCFVGSEAVTWLARTQNATREAAVRIGQALVEKGVLHHVTDEH-PFKDEYLFYRF 659          
BLAST of mRNA_M-pyrifera_M_contig128406.5705.1 vs. uniprot
Match: UPI0019E2F9F0 (Mechanosensitive ion channel protein n=1 Tax=Oscillatoriales cyanobacterium LEGE 11467 TaxID=1828826 RepID=UPI0019E2F9F0)

HSP 1 Score: 63.2 bits (152), Expect = 2.280e-10
Identity = 33/81 (40.74%), Postives = 48/81 (59.26%), Query Frame = 1
Query:    7 DLASEMMSPTDGVPVKTRKYLLKSYPSSFLGSEAVSWLAKRKDCSKPAALALGNQLFKAGLIHHSVDKSKPLLDGFFFYRF 249
            +L ++M  P  GV ++ R+Y LK+YPS F+G EAVSW+ +    S   A+ LG +L     +HH  D+  P  D + FYRF
Sbjct:  105 NLVNQMRQP-GGVAIEDRRYNLKTYPSCFVGREAVSWMMQTLQISHEDAIDLGQKLIDDKWMHHVTDEH-PFRDEYLFYRF 183          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128406.5705.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4M724_9EUKA5.550e-2555.42Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
UPI001CEC968A4.250e-1442.67hypothetical protein n=1 Tax=Leptolyngbya sp. PCC ... [more]
A0A6I5PMY4_9CYAN1.550e-1342.86Mechanosensitive ion channel n=1 Tax=Leptolyngbya ... [more]
A0A8J7BQM4_9CYAN7.380e-1342.86Mechanosensitive ion channel n=3 Tax=unclassified ... [more]
A0A2N2TXN8_9PROT1.120e-1246.91DEP domain-containing protein n=1 Tax=Betaproteoba... [more]
UPI0019E421441.320e-1243.21Protein kinase n=1 Tax=Gloeomargaritaceae cyanobac... [more]
A0A1X6NPT4_PORUM1.240e-1143.53Aurora kinase n=1 Tax=Porphyra umbilicalis TaxID=2... [more]
L8GFA4_ACACA4.270e-1140.24Protein kinase 2, putative n=1 Tax=Acanthamoeba ca... [more]
UPI001C014D8D7.920e-1137.66mechanosensitive ion channel n=1 Tax=Leptothoe spo... [more]
UPI0019E2F9F02.280e-1040.74Mechanosensitive ion channel protein n=1 Tax=Oscil... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128406contigM-pyrifera_M_contig128406:251..499 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score70.9
Seed ortholog evalue3e-10
Seed eggNOG ortholog1173025.GEI7407_2672
KEGG koko:K05802,ko:K22051
KEGG TC1.A.23.1.1,1.A.23.1.2,1.A.23.1.3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.mechanosensitive ion channel
EggNOG OGs1G2UD@1117,1H8A1@1150,COG3264@1,COG3264@2
COG Functional cat.M
Best tax levelOscillatoriales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons1
Model size249
Cds size228
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815797.0442202-CDS-M-pyrifera_M_contig128406:250..4781622815797.0442202-CDS-M-pyrifera_M_contig128406:250..478Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128406 251..478 -
1692277573.9407184-CDS-M-pyrifera_M_contig128406:250..4781692277573.9407184-CDS-M-pyrifera_M_contig128406:250..478Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128406 251..478 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815797.0539725-UTR-M-pyrifera_M_contig128406:478..4991622815797.0539725-UTR-M-pyrifera_M_contig128406:478..499Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig128406 479..499 -
1692277573.9527645-UTR-M-pyrifera_M_contig128406:478..4991692277573.9527645-UTR-M-pyrifera_M_contig128406:478..499Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig128406 479..499 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128406.5705.1prot_M-pyrifera_M_contig128406.5705.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128406 251..478 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128406.5705.1

>prot_M-pyrifera_M_contig128406.5705.1 ID=prot_M-pyrifera_M_contig128406.5705.1|Name=mRNA_M-pyrifera_M_contig128406.5705.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=76bp
MMSPTDGVPVKTRKYLLKSYPSSFLGSEAVSWLAKRKDCSKPAALALGNQ
LFKAGLIHHSVDKSKPLLDGFFFYRF
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mRNA from alignment at M-pyrifera_M_contig128406:251..499-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128406.5705.1 ID=mRNA_M-pyrifera_M_contig128406.5705.1|Name=mRNA_M-pyrifera_M_contig128406.5705.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=249bp|location=Sequence derived from alignment at M-pyrifera_M_contig128406:251..499- (Macrocystis pyrifera P11B4 male)
CTGGCCGATCTGGCTTCGGAGATGATGTCTCCTACAGATGGGGTGCCGGT CAAGACGCGCAAGTACCTCCTGAAGAGCTACCCTTCCAGCTTCTTGGGAT CGGAAGCTGTCTCGTGGTTGGCGAAGCGGAAGGACTGCTCCAAGCCCGCT GCTCTGGCTCTGGGCAACCAGCTGTTCAAGGCGGGCCTCATCCACCATTC AGTCGACAAGTCGAAGCCGCTGTTGGACGGCTTCTTCTTCTATCGCTTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig128406:251..499-

>mRNA_M-pyrifera_M_contig128406.5705.1 ID=mRNA_M-pyrifera_M_contig128406.5705.1|Name=mRNA_M-pyrifera_M_contig128406.5705.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig128406:251..499- (Macrocystis pyrifera P11B4 male)
ATGATGTCTCCTACAGATGGGGTGCCGGTCAAGACGCGCAAGTACCTCCT
GAAGAGCTACCCTTCCAGCTTCTTGGGATCGGAAGCTGTCTCGTGGTTGG
CGAAGCGGAAGGACTGCTCCAAGCCCGCTGCTCTGGCTCTGGGCAACCAG
CTGTTCAAGGCGGGCCTCATCCACCATTCAGTCGACAAGTCGAAGCCGCT
GTTGGACGGCTTCTTCTTCTATCGCTTCATGATGTCTCCTACAGATGGGG
TGCCGGTCAAGACGCGCAAGTACCTCCTGAAGAGCTACCCTTCCAGCTTC
TTGGGATCGGAAGCTGTCTCGTGGTTGGCGAAGCGGAAGGACTGCTCCAA
GCCCGCTGCTCTGGCTCTGGGCAACCAGCTGTTCAAGGCGGGCCTCATCC
ACCATTCAGTCGACAAGTCGAAGCCGCTGTTGGACGGCTTCTTCTTCTAT
CGCTTC
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