mRNA_M-pyrifera_M_contig128403.5704.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128403.5704.1
Unique NamemRNA_M-pyrifera_M_contig128403.5704.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig128403.5704.1 vs. uniprot
Match: A0A6J2V6Y4_CHACN (saccharopine dehydrogenase-like oxidoreductase isoform X3 n=1 Tax=Chanos chanos TaxID=29144 RepID=A0A6J2V6Y4_CHACN)

HSP 1 Score: 91.3 bits (225), Expect = 3.670e-20
Identity = 38/66 (57.58%), Postives = 50/66 (75.76%), Query Frame = 1 
Query:   10 WGEPVVRACVRNKCDYVDITGEPVFIDSTSLHYHNAARENNVLIVPTCGFDSIPADIGMSYTVDQF 207
            +GEPVV+AC+ N   Y+DI GEP F++   L YH+ A+EN V I+ +CGFDSIPAD+G+ YT DQF
Sbjct:  107 YGEPVVKACIENGAHYIDICGEPQFLEGMQLSYHSKAQENGVYIIGSCGFDSIPADMGILYTRDQF 172
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BLAST of mRNA_M-pyrifera_M_contig128403.5704.1 vs. uniprot
Match: S4RLV1_PETMA (Sacchrp_dh_NADP domain-containing protein n=1 Tax=Petromyzon marinus TaxID=7757 RepID=S4RLV1_PETMA)

HSP 1 Score: 87.4 bits (215), Expect = 4.230e-20
Identity = 38/66 (57.58%), Postives = 48/66 (72.73%), Query Frame = 1 
Query:   10 WGEPVVRACVRNKCDYVDITGEPVFIDSTSLHYHNAARENNVLIVPTCGFDSIPADIGMSYTVDQF 207
            +GEPVV+ACV N C  VD+ GEP F++   L Y  AA EN+V I+ +CGFDSIPAD+G+ YT  QF
Sbjct:  108 YGEPVVKACVENGCSCVDLCGEPQFLEEMQLKYSKAAEENSVYIIGSCGFDSIPADLGVLYTRHQF 173
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BLAST of mRNA_M-pyrifera_M_contig128403.5704.1 vs. uniprot
Match: A0A6J2V3I9_CHACN (saccharopine dehydrogenase-like oxidoreductase isoform X1 n=2 Tax=Chanos chanos TaxID=29144 RepID=A0A6J2V3I9_CHACN)

HSP 1 Score: 91.3 bits (225), Expect = 5.270e-20
Identity = 38/66 (57.58%), Postives = 50/66 (75.76%), Query Frame = 1 
Query:   10 WGEPVVRACVRNKCDYVDITGEPVFIDSTSLHYHNAARENNVLIVPTCGFDSIPADIGMSYTVDQF 207
            +GEPVV+AC+ N   Y+DI GEP F++   L YH+ A+EN V I+ +CGFDSIPAD+G+ YT DQF
Sbjct:  107 YGEPVVKACIENGAHYIDICGEPQFLEGMQLSYHSKAQENGVYIIGSCGFDSIPADMGILYTRDQF 172
[Close]
BLAST of mRNA_M-pyrifera_M_contig128403.5704.1 vs. uniprot
Match: A0A553RC91_9TELE (Sacchrp_dh_NADP domain-containing protein (Fragment) n=1 Tax=Danionella translucida TaxID=623744 RepID=A0A553RC91_9TELE)

HSP 1 Score: 90.1 bits (222), Expect = 1.440e-19
Identity = 37/66 (56.06%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:   10 WGEPVVRACVRNKCDYVDITGEPVFIDSTSLHYHNAARENNVLIVPTCGFDSIPADIGMSYTVDQF 207
            +GEPVV+AC+ N   Y+DI GEP F++   L+YH+AA+EN V I+ +CGFDSIPAD+G+ YT + F
Sbjct:  146 YGEPVVKACIENGAHYIDICGEPQFLEGIQLNYHSAAQENAVFIIGSCGFDSIPADMGIIYTQNHF 211
[Close]
BLAST of mRNA_M-pyrifera_M_contig128403.5704.1 vs. uniprot
Match: A0A3B4EMN5_PYGNA (Saccharopine dehydrogenase-like oxidoreductase n=4 Tax=Serrasalmidae TaxID=42495 RepID=A0A3B4EMN5_PYGNA)

HSP 1 Score: 89.7 bits (221), Expect = 1.820e-19
Identity = 37/66 (56.06%), Postives = 49/66 (74.24%), Query Frame = 1 
Query:   10 WGEPVVRACVRNKCDYVDITGEPVFIDSTSLHYHNAARENNVLIVPTCGFDSIPADIGMSYTVDQF 207
            +GEPVV+AC+ N   Y+DI GEP F++   L YH+ A+E  V ++ +CGFDSIPADIG+ YT DQF
Sbjct:  109 YGEPVVKACIENGAHYIDICGEPQFLEGMQLKYHSKAQEKRVYVIGSCGFDSIPADIGILYTRDQF 174
[Close]
BLAST of mRNA_M-pyrifera_M_contig128403.5704.1 vs. uniprot
Match: UPI000A2A6EC5 (saccharopine dehydrogenase-like oxidoreductase n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A6EC5)

HSP 1 Score: 89.4 bits (220), Expect = 2.410e-19
Identity = 38/66 (57.58%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:   10 WGEPVVRACVRNKCDYVDITGEPVFIDSTSLHYHNAARENNVLIVPTCGFDSIPADIGMSYTVDQF 207
            +GE VV+A V+NKC ++DI+GEP F++S  L YH+ A +NNV IV TCGFDSIPAD+G  + ++QF
Sbjct:   98 YGEAVVKAAVQNKCHHIDISGEPEFLESMQLKYHDQAVQNNVHIVGTCGFDSIPADMGTVFAIEQF 163
[Close]
BLAST of mRNA_M-pyrifera_M_contig128403.5704.1 vs. uniprot
Match: A0A5A9NEN4_9TELE (Saccharopine dehydrogenase-like oxidoreductase n=1 Tax=Triplophysa tibetana TaxID=1572043 RepID=A0A5A9NEN4_9TELE)

HSP 1 Score: 89.4 bits (220), Expect = 2.520e-19
Identity = 37/66 (56.06%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:   10 WGEPVVRACVRNKCDYVDITGEPVFIDSTSLHYHNAARENNVLIVPTCGFDSIPADIGMSYTVDQF 207
            +GEPVV+AC+ N    +DI GEP F++   L+YH+AA+EN V I+ +CGFDS+PAD+G+ YT DQF
Sbjct:  107 YGEPVVKACLENGAHCIDICGEPQFLEGIQLNYHSAAQENGVYIIGSCGFDSVPADMGILYTRDQF 172
[Close]
BLAST of mRNA_M-pyrifera_M_contig128403.5704.1 vs. uniprot
Match: UPI0001CB9D11 (saccharopine dehydrogenase-like oxidoreductase-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0001CB9D11)

HSP 1 Score: 89.0 bits (219), Expect = 3.320e-19
Identity = 35/66 (53.03%), Postives = 50/66 (75.76%), Query Frame = 1 
Query:   10 WGEPVVRACVRNKCDYVDITGEPVFIDSTSLHYHNAARENNVLIVPTCGFDSIPADIGMSYTVDQF 207
            WGE VV++CV N C ++DI+GEP F+++  L Y + AREN+V ++ TCGFDS+PADIG ++   QF
Sbjct:  103 WGEQVVKSCVENGCHHIDISGEPQFLETMQLKYDSKARENSVFVIGTCGFDSVPADIGTNFIQQQF 168
[Close]
BLAST of mRNA_M-pyrifera_M_contig128403.5704.1 vs. uniprot
Match: A0A5N5N7B6_PANHP (Sacchrp_dh_NADP domain-containing protein (Fragment) n=2 Tax=Pangasianodon hypophthalmus TaxID=310915 RepID=A0A5N5N7B6_PANHP)

HSP 1 Score: 87.0 bits (214), Expect = 6.280e-19
Identity = 40/66 (60.61%), Postives = 49/66 (74.24%), Query Frame = 1 
Query:   10 WGEPVVRACVRNKCDYVDITGEPVFIDSTSLHYHNAARENNVLIVPTCGFDSIPADIGMSYTVDQF 207
            +GEPVV+ACV N    VDI+GEP F++S  L+Y  AA E  V IV +CGFDSIPAD+G+ YT DQF
Sbjct:  113 YGEPVVKACVENGAHCVDISGEPQFLESMQLNYDGAAAEGGVYIVGSCGFDSIPADMGVIYTRDQF 178
[Close]
BLAST of mRNA_M-pyrifera_M_contig128403.5704.1 vs. uniprot
Match: A0A397V4P0_9GLOM (Putative saccharopine dehydrogenase-like protein n=3 Tax=Gigaspora TaxID=4873 RepID=A0A397V4P0_9GLOM)

HSP 1 Score: 88.2 bits (217), Expect = 7.170e-19
Identity = 37/65 (56.92%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:   10 WGEPVVRACVRNKCDYVDITGEPVFIDSTSLHYHNAARENNVLIVPTCGFDSIPADIGMSYTVDQ 204
            +GEPVV+ACV N CDY+DI+GEP FI+   L Y  AA+ NN  +V  CG+DSIPA++G  YT  Q
Sbjct:  101 YGEPVVKACVENFCDYIDISGEPDFIERMQLTYDQAAKNNNTTVVSACGYDSIPAELGFLYTKQQ 165
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128403.5704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6J2V6Y4_CHACN3.670e-2057.58saccharopine dehydrogenase-like oxidoreductase iso... [more]
S4RLV1_PETMA4.230e-2057.58Sacchrp_dh_NADP domain-containing protein n=1 Tax=... [more]
A0A6J2V3I9_CHACN5.270e-2057.58saccharopine dehydrogenase-like oxidoreductase iso... [more]
A0A553RC91_9TELE1.440e-1956.06Sacchrp_dh_NADP domain-containing protein (Fragmen... [more]
A0A3B4EMN5_PYGNA1.820e-1956.06Saccharopine dehydrogenase-like oxidoreductase n=4... [more]
UPI000A2A6EC52.410e-1957.58saccharopine dehydrogenase-like oxidoreductase n=1... [more]
A0A5A9NEN4_9TELE2.520e-1956.06Saccharopine dehydrogenase-like oxidoreductase n=1... [more]
UPI0001CB9D113.320e-1953.03saccharopine dehydrogenase-like oxidoreductase-lik... [more]
A0A5N5N7B6_PANHP6.280e-1960.61Sacchrp_dh_NADP domain-containing protein (Fragmen... [more]
A0A397V4P0_9GLOM7.170e-1956.92Putative saccharopine dehydrogenase-like protein n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128403contigM-pyrifera_M_contig128403:2..282 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score89.4
Seed ortholog evalue7.3e-16
Seed eggNOG ortholog10224.XP_002732534.1
Preferred nameSCCPDH
Hectar predicted targeting categoryother localisation
GOsGO:0002576,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005811,GO:0006810,GO:0006887,GO:0007275,GO:0007423,GO:0007444,GO:0008150,GO:0009888,GO:0009987,GO:0012505,GO:0016192,GO:0022416,GO:0030141,GO:0030496,GO:0031091,GO:0031093,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032501,GO:0032502,GO:0032940,GO:0034774,GO:0035220,GO:0035295,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0046903,GO:0048513,GO:0048731,GO:0048856,GO:0051179,GO:0051234,GO:0060205,GO:0060429,GO:0070013,GO:0097708,GO:0099503
EggNOG free text desc.oxidoreductase activity
EggNOG OGs38D2K@33154,3BE3X@33208,3CZIP@33213,COG3268@1,KOG2733@2759
COG Functional cat.H
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons2
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815796.990939-CDS-M-pyrifera_M_contig128403:1..1361622815796.990939-CDS-M-pyrifera_M_contig128403:1..136Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128403 2..136 +
1692277573.912354-CDS-M-pyrifera_M_contig128403:1..1361692277573.912354-CDS-M-pyrifera_M_contig128403:1..136Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128403 2..136 +
1622815797.0083349-CDS-M-pyrifera_M_contig128403:210..2821622815797.0083349-CDS-M-pyrifera_M_contig128403:210..282Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128403 211..282 +
1692277573.9304297-CDS-M-pyrifera_M_contig128403:210..2821692277573.9304297-CDS-M-pyrifera_M_contig128403:210..282Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128403 211..282 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128403.5704.1prot_M-pyrifera_M_contig128403.5704.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128403 2..282 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128403.5704.1

>prot_M-pyrifera_M_contig128403.5704.1 ID=prot_M-pyrifera_M_contig128403.5704.1|Name=mRNA_M-pyrifera_M_contig128403.5704.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=69bp
FFKWGEPVVRACVRNKCDYVDITGEPVFIDSTSLHYHNAARENNVLIVPT
CGFDSIPADIGMSYTVDQF
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mRNA from alignment at M-pyrifera_M_contig128403:2..282+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128403.5704.1 ID=mRNA_M-pyrifera_M_contig128403.5704.1|Name=mRNA_M-pyrifera_M_contig128403.5704.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=281bp|location=Sequence derived from alignment at M-pyrifera_M_contig128403:2..282+ (Macrocystis pyrifera P11B4 male)
TTCTTCAAGTGGGGCGAGCCGGTGGTGCGAGCTTGCGTGCGCAACAAGTG
CGACTACGTGGATATCACCGGCGAGCCGGTGTTCATCGACTCCACCTCGC
TGCACTACCACAACGCGGCACGCGAGAACAACGTGGTGCGTGCTCGGGCG
CACGCGGAGCGCCACGCCCGCCCGTTTCATCTGACCGCTGCCTCTCGTGT
CCGGTGCAGCTCATCGTGCCCACCTGCGGGTTCGACAGCATCCCCGCTGA
CATTGGGATGAGCTACACGGTGGACCAGTTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig128403:2..282+

>mRNA_M-pyrifera_M_contig128403.5704.1 ID=mRNA_M-pyrifera_M_contig128403.5704.1|Name=mRNA_M-pyrifera_M_contig128403.5704.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig128403:2..282+ (Macrocystis pyrifera P11B4 male)
TTCTTCAAGTGGGGCGAGCCGGTGGTGCGAGCTTGCGTGCGCAACAAGTG
CGACTACGTGGATATCACCGGCGAGCCGGTGTTCATCGACTCCACCTCGC
TGCACTACCACAACGCGGCACGCGAGAACAACGTGTTCTTCAAGTGGGGC
GAGCCGGTGGTGCGAGCTTGCGTGCGCAACAAGTGCGACTACGTGGATAT
CACCGGCGAGCCGGTGTTCATCGACTCCACCTCGCTGCACTACCACAACG
CGGCACGCGAGAACAACGTGCTCATCGTGCCCACCTGCGGGTTCGACAGC
ATCCCCGCTGACATTGGGATGAGCTACACGGTGGACCAGTTTCTCATCGT
GCCCACCTGCGGGTTCGACAGCATCCCCGCTGACATTGGGATGAGCTACA
CGGTGGACCAGTTT
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