mRNA_M-pyrifera_M_contig12838.5702.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12838.5702.1
Unique NamemRNA_M-pyrifera_M_contig12838.5702.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12838.5702.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12838contigM-pyrifera_M_contig12838:3070..3396 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size329
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815796.9029999-CDS-M-pyrifera_M_contig12838:3069..33961622815796.9029999-CDS-M-pyrifera_M_contig12838:3069..3396Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12838 3070..3396 +
1692277573.8655715-CDS-M-pyrifera_M_contig12838:3069..33961692277573.8655715-CDS-M-pyrifera_M_contig12838:3069..3396Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12838 3070..3396 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12838.5702.1prot_M-pyrifera_M_contig12838.5702.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12838 3070..3396 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12838.5702.1

>prot_M-pyrifera_M_contig12838.5702.1 ID=prot_M-pyrifera_M_contig12838.5702.1|Name=mRNA_M-pyrifera_M_contig12838.5702.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=109bp
PRCVAHARQLVLTTCHAVWLIVSGQSLRCLKISQGYFFVAVRALEEMALV
LVRHAHPQGVNAGSLYAERCLRRLALGSEGCSLLTCMLRNRRRYFIRGGR
TFSVAADAW
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mRNA from alignment at M-pyrifera_M_contig12838:3070..3396+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12838.5702.1 ID=mRNA_M-pyrifera_M_contig12838.5702.1|Name=mRNA_M-pyrifera_M_contig12838.5702.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=327bp|location=Sequence derived from alignment at M-pyrifera_M_contig12838:3070..3396+ (Macrocystis pyrifera P11B4 male)
CCAAGGTGCGTAGCGCACGCCAGACAGTTGGTTCTGACAACATGCCATGC
CGTGTGGCTTATCGTCAGCGGTCAATCCCTGAGATGCCTCAAAATATCGC
AGGGCTACTTTTTTGTTGCGGTGCGGGCTTTAGAAGAGATGGCCCTCGTT
CTCGTACGACACGCTCATCCACAGGGGGTGAATGCGGGTTCTCTCTACGC
CGAGCGATGTCTTAGGCGCCTCGCTTTGGGTTCAGAGGGCTGTTCCTTGC
TGACATGCATGCTGCGCAATCGCCGCCGGTACTTTATCCGCGGGGGGCGC
ACGTTTTCTGTTGCAGCAGACGCCTGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12838:3070..3396+

>mRNA_M-pyrifera_M_contig12838.5702.1 ID=mRNA_M-pyrifera_M_contig12838.5702.1|Name=mRNA_M-pyrifera_M_contig12838.5702.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig12838:3070..3396+ (Macrocystis pyrifera P11B4 male)
CCAAGGTGCGTAGCGCACGCCAGACAGTTGGTTCTGACAACATGCCATGC
CGTGTGGCTTATCGTCAGCGGTCAATCCCTGAGATGCCTCAAAATATCGC
AGGGCTACTTTTTTGTTGCGGTGCGGGCTTTAGAAGAGATGGCCCTCGTT
CTCGTACGACACGCTCATCCACAGGGGGTGAATGCGGGTTCTCTCTACGC
CGAGCGATGTCTTAGGCGCCTCGCTTTGGGTTCAGAGGGCTGTTCCTTGC
TGACATGCATGCTGCGCAATCGCCGCCGGTACTTTATCCGCGGGGGGCGC
ACGTTTTCTGTTGCAGCAGACGCCTGGCCAAGGTGCGTAGCGCACGCCAG
ACAGTTGGTTCTGACAACATGCCATGCCGTGTGGCTTATCGTCAGCGGTC
AATCCCTGAGATGCCTCAAAATATCGCAGGGCTACTTTTTTGTTGCGGTG
CGGGCTTTAGAAGAGATGGCCCTCGTTCTCGTACGACACGCTCATCCACA
GGGGGTGAATGCGGGTTCTCTCTACGCCGAGCGATGTCTTAGGCGCCTCG
CTTTGGGTTCAGAGGGCTGTTCCTTGCTGACATGCATGCTGCGCAATCGC
CGCCGGTACTTTATCCGCGGGGGGCGCACGTTTTCTGTTGCAGCAGACGC
CTGG
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