mRNA_M-pyrifera_M_contig128364.5699.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128364.5699.1
Unique NamemRNA_M-pyrifera_M_contig128364.5699.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig128364.5699.1 vs. uniprot
Match: A0A1B6E691_9HEMI (EGF-like domain-containing protein (Fragment) n=1 Tax=Clastoptera arizonana TaxID=38151 RepID=A0A1B6E691_9HEMI)

HSP 1 Score: 52.8 bits (125), Expect = 2.210e-7
Identity = 23/59 (38.98%), Postives = 33/59 (55.93%), Query Frame = 1 
Query:    1 HGECRNGTCWCEDGWSGHGCHVKVCPSGCSGHGVC---RPSGHCEXEAGYGGGDCATRV 168
            HG+C+NGTC C  GW+G  C +  C + C+ HG C       HC+    + G DC+ R+
Sbjct:    8 HGQCKNGTCVCSQGWNGRHCTLSGCLNACNRHGSCVLVDGEYHCQCNDDWAGVDCSVRL 66
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BLAST of mRNA_M-pyrifera_M_contig128364.5699.1 vs. uniprot
Match: A0A182SGF2_9DIPT (EGF-like domain-containing protein n=1 Tax=Anopheles maculatus TaxID=74869 RepID=A0A182SGF2_9DIPT)

HSP 1 Score: 50.8 bits (120), Expect = 2.610e-6
Identity = 19/35 (54.29%), Postives = 24/35 (68.57%), Query Frame = 1 
Query:    1 HGECRNGTCWCEDGWSGHGCHVKVCPSGCSGHGVC 105
            HG+C+NGTC C  GW+G  C +  C +GCS HG C
Sbjct:   14 HGQCKNGTCVCSQGWNGRHCTLPGCVNGCSRHGQC 48
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BLAST of mRNA_M-pyrifera_M_contig128364.5699.1 vs. uniprot
Match: A0A813AXU2_9DINO (TNXB protein n=5 Tax=Sar TaxID=2698737 RepID=A0A813AXU2_9DINO)

HSP 1 Score: 48.9 bits (115), Expect = 3.450e-5
Identity = 18/30 (60.00%), Postives = 22/30 (73.33%), Query Frame = 1 
Query:   22 TCWCEDGWSGHGCHVKVCPSGCSGHGVCRP 111
            TC C+ GW+G  C  ++CP GCSGHGVC P
Sbjct: 1889 TCECDLGWAGVSCERRICPEGCSGHGVCDP 1918
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128364.5699.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A1B6E691_9HEMI2.210e-738.98EGF-like domain-containing protein (Fragment) n=1 ... [more]
A0A182SGF2_9DIPT2.610e-654.29EGF-like domain-containing protein n=1 Tax=Anophel... [more]
A0A813AXU2_9DINO3.450e-560.00TNXB protein n=5 Tax=Sar TaxID=2698737 RepID=A0A81... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128364contigM-pyrifera_M_contig128364:330..497 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size168
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815796.782371-CDS-M-pyrifera_M_contig128364:329..4971622815796.782371-CDS-M-pyrifera_M_contig128364:329..497Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128364 330..497 -
1692277573.8298347-CDS-M-pyrifera_M_contig128364:329..4971692277573.8298347-CDS-M-pyrifera_M_contig128364:329..497Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128364 330..497 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128364.5699.1prot_M-pyrifera_M_contig128364.5699.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128364 330..497 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128364.5699.1

>prot_M-pyrifera_M_contig128364.5699.1 ID=prot_M-pyrifera_M_contig128364.5699.1|Name=mRNA_M-pyrifera_M_contig128364.5699.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=56bp
HGECRNGTCWCEDGWSGHGCHVKVCPSGCSGHGVCRPSGHCECEAGYGGG
DCATRV
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mRNA from alignment at M-pyrifera_M_contig128364:330..497-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128364.5699.1 ID=mRNA_M-pyrifera_M_contig128364.5699.1|Name=mRNA_M-pyrifera_M_contig128364.5699.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=168bp|location=Sequence derived from alignment at M-pyrifera_M_contig128364:330..497- (Macrocystis pyrifera P11B4 male)
CACGGCGAGTGCCGCAACGGCACGTGCTGGTGCGAGGACGGCTGGTCCGG
CCACGGCTGCCACGTGAAGGTGTGCCCGTCTGGGTGCAGCGGCCACGGTG
TGTGCCGCCCGTCCGGTCACTGCGAATGCGAGGCTGGCTACGGCGGTGGC
GATTGCGCGACGCGCGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig128364:330..497-

>mRNA_M-pyrifera_M_contig128364.5699.1 ID=mRNA_M-pyrifera_M_contig128364.5699.1|Name=mRNA_M-pyrifera_M_contig128364.5699.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig128364:330..497- (Macrocystis pyrifera P11B4 male)
CACGGCGAGTGCCGCAACGGCACGTGCTGGTGCGAGGACGGCTGGTCCGG
CCACGGCTGCCACGTGAAGGTGTGCCCGTCTGGGTGCAGCGGCCACGGTG
TGTGCCGCCCGTCCGGTCACTGCGAATGCGAGGCTGGCTACGGCGGTGGC
GATTGCGCGACGCGCGTGCACGGCGAGTGCCGCAACGGCACGTGCTGGTG
CGAGGACGGCTGGTCCGGCCACGGCTGCCACGTGAAGGTGTGCCCGTCTG
GGTGCAGCGGCCACGGTGTGTGCCGCCCGTCCGGTCACTGCGAATGCGAG
GCTGGCTACGGCGGTGGCGATTGCGCGACGCGCGTG
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