mRNA_M-pyrifera_M_contig128227.5678.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128227.5678.1
Unique NamemRNA_M-pyrifera_M_contig128227.5678.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig128227.5678.1 vs. uniprot
Match: A0A257VPN3_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetales bacterium 12-60-4 TaxID=1970541 RepID=A0A257VPN3_9BACT)

HSP 1 Score: 58.2 bits (139), Expect = 6.350e-7
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 1 
Query:   43 FCGAACYNNCPTTCCQPTACYTACRVERQT 132
            +CGA CY+NCPTT CQPTACYT CRVER+T
Sbjct:    2 YCGAGCYSNCPTTACQPTACYTTCRVERET 31
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BLAST of mRNA_M-pyrifera_M_contig128227.5678.1 vs. uniprot
Match: A0A3L7Q222_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7Q222_9BACT)

HSP 1 Score: 57.4 bits (137), Expect = 1.370e-6
Identity = 28/37 (75.68%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:   22 NTATAGGFCGAACYNNCPTTCCQPTACYTACRVERQT 132
            ++A  G FCGAA YN CP T CQPTACYTACRVERQT
Sbjct:   17 SSAQGGWFCGAARYNCCPVTVCQPTACYTACRVERQT 53
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BLAST of mRNA_M-pyrifera_M_contig128227.5678.1 vs. uniprot
Match: A0A5C9CJ00_9BACT (YTV domain-containing protein (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A5C9CJ00_9BACT)

HSP 1 Score: 56.2 bits (134), Expect = 1.710e-6
Identity = 25/38 (65.79%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:   19 ANTATAGGFCGAACYNNCPTTCCQPTACYTACRVERQT 132
            A+TA AGG+CG+  Y  CPT  CQP+ACYT+C+VERQT
Sbjct:   17 ASTAQAGGYCGSCNYGGCPTNACQPSACYTSCKVERQT 54
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BLAST of mRNA_M-pyrifera_M_contig128227.5678.1 vs. uniprot
Match: A0A5C5WZS1_9PLAN (Uncharacterized protein n=1 Tax=Thalassoglobus neptunius TaxID=1938619 RepID=A0A5C5WZS1_9PLAN)

HSP 1 Score: 55.5 bits (132), Expect = 6.190e-6
Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:   25 TATAGGFCGAACYNNCPTTCCQPTACYTACRVERQT 132
            TA AG F G   YN+CP TCCQPT+CYTAC+VER+T
Sbjct:   20 TANAGWFTGTVGYNSCPVTCCQPTSCYTACKVERET 55
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BLAST of mRNA_M-pyrifera_M_contig128227.5678.1 vs. uniprot
Match: UPI00029A2869 (YTV domain-containing protein n=1 Tax=Schlesneria paludicola TaxID=360056 RepID=UPI00029A2869)

HSP 1 Score: 55.5 bits (132), Expect = 6.200e-6
Identity = 26/39 (66.67%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:   16 SANTATAGGFCGAACYNNCPTTCCQPTACYTACRVERQT 132
            S ++A+AG +CGAA Y  CPT  CQPT CYT CRVERQT
Sbjct:   19 SPDSASAGCYCGAASYRGCPTAACQPTGCYTTCRVERQT 57
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BLAST of mRNA_M-pyrifera_M_contig128227.5678.1 vs. uniprot
Match: A0A3L7NVE6_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7NVE6_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 8.500e-6
Identity = 27/42 (64.29%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:    7 ISLSANTATAGGFCGAACYNNCPTTCCQPTACYTACRVERQT 132
            I+  A+TA AG FCGAA Y+ CP + CQP++CYTAC+VERQT
Sbjct:   12 IAAMASTAQAGWFCGAANYSCCPVSACQPSSCYTACKVERQT 53
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BLAST of mRNA_M-pyrifera_M_contig128227.5678.1 vs. uniprot
Match: A0A7C2K299_9PLAN (Uncharacterized protein n=1 Tax=Schlesneria paludicola TaxID=360056 RepID=A0A7C2K299_9PLAN)

HSP 1 Score: 54.7 bits (130), Expect = 1.140e-5
Identity = 23/30 (76.67%), Postives = 27/30 (90.00%), Query Frame = 1 
Query:   43 FCGAACYNNCPTTCCQPTACYTACRVERQT 132
            +CGAACY+ CPTT C+PTACYT CRVER+T
Sbjct:   27 YCGAACYSCCPTTACRPTACYTTCRVERET 56
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BLAST of mRNA_M-pyrifera_M_contig128227.5678.1 vs. uniprot
Match: D5SU36_PLAL2 (YTV domain protein n=4 Tax=Planctopirus TaxID=1649480 RepID=D5SU36_PLAL2)

HSP 1 Score: 54.7 bits (130), Expect = 1.140e-5
Identity = 26/35 (74.29%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:   28 ATAGGFCGAACYNNCPTTCCQPTACYTACRVERQT 132
            A A  +CGAA Y+ CPTT CQPTACYT CRVERQT
Sbjct:   21 AEAARYCGAASYSCCPTTACQPTACYTTCRVERQT 55
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BLAST of mRNA_M-pyrifera_M_contig128227.5678.1 vs. uniprot
Match: A0A517ZGD3_9PLAN (Uncharacterized protein n=1 Tax=Maioricimonas rarisocia TaxID=2528026 RepID=A0A517ZGD3_9PLAN)

HSP 1 Score: 53.5 bits (127), Expect = 2.850e-5
Identity = 25/33 (75.76%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:   34 AGGFCGAACYNNCPTTCCQPTACYTACRVERQT 132
            AG FCGAA Y+ CP T CQPTACYTACRV+R+T
Sbjct:   23 AGWFCGAARYSCCPVTSCQPTACYTACRVQRET 55
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BLAST of mRNA_M-pyrifera_M_contig128227.5678.1 vs. uniprot
Match: F0SGL0_RUBBR (YTV repeat-containing protein n=2 Tax=Rubinisphaera TaxID=1649490 RepID=F0SGL0_RUBBR)

HSP 1 Score: 53.1 bits (126), Expect = 3.830e-5
Identity = 26/43 (60.47%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:    4 LISLSANTATAGGFCGAACYNNCPTTCCQPTACYTACRVERQT 132
            L   +A  A+A GFCGA  YN CP   CQPT+CYT C+VERQT
Sbjct:   12 LAGFTAAEASAAGFCGACNYNCCPPVACQPTSCYTTCKVERQT 54
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128227.5678.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A257VPN3_9BACT6.350e-780.00Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]
A0A3L7Q222_9BACT1.370e-675.68Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A5C9CJ00_9BACT1.710e-665.79YTV domain-containing protein (Fragment) n=1 Tax=P... [more]
A0A5C5WZS1_9PLAN6.190e-669.44Uncharacterized protein n=1 Tax=Thalassoglobus nep... [more]
UPI00029A28696.200e-666.67YTV domain-containing protein n=1 Tax=Schlesneria ... [more]
A0A3L7NVE6_9BACT8.500e-664.29Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A7C2K299_9PLAN1.140e-576.67Uncharacterized protein n=1 Tax=Schlesneria paludi... [more]
D5SU36_PLAL21.140e-574.29YTV domain protein n=4 Tax=Planctopirus TaxID=1649... [more]
A0A517ZGD3_9PLAN2.850e-575.76Uncharacterized protein n=1 Tax=Maioricimonas rari... [more]
F0SGL0_RUBBR3.830e-560.47YTV repeat-containing protein n=2 Tax=Rubinisphaer... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128227contigM-pyrifera_M_contig128227:3..500 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size498
Cds size498
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815795.7529256-CDS-M-pyrifera_M_contig128227:2..5001622815795.7529256-CDS-M-pyrifera_M_contig128227:2..500Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128227 3..500 -
1692277573.4148173-CDS-M-pyrifera_M_contig128227:2..5001692277573.4148173-CDS-M-pyrifera_M_contig128227:2..500Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128227 3..500 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128227.5678.1prot_M-pyrifera_M_contig128227.5678.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128227 3..500 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128227.5678.1

>prot_M-pyrifera_M_contig128227.5678.1 ID=prot_M-pyrifera_M_contig128227.5678.1|Name=mRNA_M-pyrifera_M_contig128227.5678.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=166bp
SLISLSANTATAGGFCGAACYNNCPTTCCQPTACYTACRVERQTCQRTVY
KTCYEPQQYTTYRNVYQTVCEEQPVTCYRTVVEQACREEQYQVQRQVTET
AYREQSYQVQRPVWETQYRENSYQVRRPVWEESTRECRNVVYRPVTETCE
REVCRTVMRQVTETVN
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mRNA from alignment at M-pyrifera_M_contig128227:3..500-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128227.5678.1 ID=mRNA_M-pyrifera_M_contig128227.5678.1|Name=mRNA_M-pyrifera_M_contig128227.5678.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=498bp|location=Sequence derived from alignment at M-pyrifera_M_contig128227:3..500- (Macrocystis pyrifera P11B4 male)
AGTCTCATCTCACTGTCAGCGAACACCGCCACCGCCGGCGGCTTCTGCGG
AGCTGCCTGTTACAACAACTGTCCCACGACATGTTGTCAGCCGACAGCCT
GCTACACCGCTTGCCGTGTCGAACGTCAGACGTGCCAACGCACTGTCTAC
AAAACGTGTTATGAGCCACAGCAGTACACGACCTATCGCAATGTCTATCA
GACGGTTTGCGAAGAACAGCCGGTGACGTGCTACCGCACGGTCGTCGAGC
AAGCATGTCGTGAGGAGCAGTACCAGGTCCAGCGTCAGGTGACCGAAACC
GCTTACCGCGAGCAGAGCTATCAAGTCCAGCGACCCGTATGGGAAACGCA
GTACCGGGAGAATTCCTATCAGGTGCGACGACCTGTCTGGGAAGAGTCGA
CACGCGAATGCCGCAACGTCGTCTATCGTCCGGTGACCGAAACCTGCGAG
CGTGAAGTCTGTCGTACTGTCATGCGTCAAGTGACGGAAACAGTCAAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig128227:3..500-

>mRNA_M-pyrifera_M_contig128227.5678.1 ID=mRNA_M-pyrifera_M_contig128227.5678.1|Name=mRNA_M-pyrifera_M_contig128227.5678.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=996bp|location=Sequence derived from alignment at M-pyrifera_M_contig128227:3..500- (Macrocystis pyrifera P11B4 male)
AGTCTCATCTCACTGTCAGCGAACACCGCCACCGCCGGCGGCTTCTGCGG
AGCTGCCTGTTACAACAACTGTCCCACGACATGTTGTCAGCCGACAGCCT
GCTACACCGCTTGCCGTGTCGAACGTCAGACGTGCCAACGCACTGTCTAC
AAAACGTGTTATGAGCCACAGCAGTACACGACCTATCGCAATGTCTATCA
GACGGTTTGCGAAGAACAGCCGGTGACGTGCTACCGCACGGTCGTCGAGC
AAGCATGTCGTGAGGAGCAGTACCAGGTCCAGCGTCAGGTGACCGAAACC
GCTTACCGCGAGCAGAGCTATCAAGTCCAGCGACCCGTATGGGAAACGCA
GTACCGGGAGAATTCCTATCAGGTGCGACGACCTGTCTGGGAAGAGTCGA
CACGCGAATGCCGCAACGTCGTCTATCGTCCGGTGACCGAAACCTGCGAG
CGTGAAGTCTGTCGTACTGTCATGCGTCAAGTGACGGAAACAGTCAATAG
TCTCATCTCACTGTCAGCGAACACCGCCACCGCCGGCGGCTTCTGCGGAG
CTGCCTGTTACAACAACTGTCCCACGACATGTTGTCAGCCGACAGCCTGC
TACACCGCTTGCCGTGTCGAACGTCAGACGTGCCAACGCACTGTCTACAA
AACGTGTTATGAGCCACAGCAGTACACGACCTATCGCAATGTCTATCAGA
CGGTTTGCGAAGAACAGCCGGTGACGTGCTACCGCACGGTCGTCGAGCAA
GCATGTCGTGAGGAGCAGTACCAGGTCCAGCGTCAGGTGACCGAAACCGC
TTACCGCGAGCAGAGCTATCAAGTCCAGCGACCCGTATGGGAAACGCAGT
ACCGGGAGAATTCCTATCAGGTGCGACGACCTGTCTGGGAAGAGTCGACA
CGCGAATGCCGCAACGTCGTCTATCGTCCGGTGACCGAAACCTGCGAGCG
TGAAGTCTGTCGTACTGTCATGCGTCAAGTGACGGAAACAGTCAAT
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