mRNA_M-pyrifera_M_contig128205.5670.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128205.5670.1
Unique NamemRNA_M-pyrifera_M_contig128205.5670.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig128205.5670.1 vs. uniprot
Match: A0A6B1AWW4_9ACTN (Glycosyltransferase family 4 protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1AWW4_9ACTN)

HSP 1 Score: 139 bits (350), Expect = 1.240e-36
Identity = 79/148 (53.38%), Postives = 100/148 (67.57%), Query Frame = 1
Query:    7 TLDELPTDVRLVIAGPPGNDAATVDAALARHGDR-IVRLPQVSDHDRVALTAGAEALLWPSRYEGFALPPLEALAAGTPIVATAVGALPELVGDIVDLVAPGDDEAFTAAVVTALAARAPVSPQTSARVIQHSWDDAAAQMIEIYTRV 447
            +L  LP DV LV+AGPPGN  +T+ A+    GDR  VRLP V D  + AL  GA  L +PSRYEGF LPPLEAL+ GTP+VATAVGALPEL+GD+V L  PG+DEAF+  +  A++    V  + SAR+   +W  AA QM +IY  +
Sbjct:  271 SLGSLPNDVALVVAGPPGNAESTLRASA---GDRRFVRLPVVDDRQKAALLRGATVLAFPSRYEGFGLPPLEALSVGTPVVATAVGALPELIGDVVSLAPPGNDEAFSDQLRAAISEPGTVPVELSARIKAMTWQTAAQQMADIYRSI 415          
BLAST of mRNA_M-pyrifera_M_contig128205.5670.1 vs. uniprot
Match: UPI001AA059E0 (glycosyltransferase family 4 protein n=1 Tax=Rhabdothermincola sediminis TaxID=2751370 RepID=UPI001AA059E0)

HSP 1 Score: 114 bits (284), Expect = 2.700e-27
Identity = 72/148 (48.65%), Postives = 88/148 (59.46%), Query Frame = 1
Query:   28 DVRLVIAGPPGNDAATVDAAL--ARHGDRIVRLPQVSDHDRVALTAGAEALLWPSRYEGFALPPLEALAAGTPIVATAVGALPELVGDIVDLVAPGDDEAFTAA---VVTALAARAPVSPQTSARVIQHSWDDAAAQMIEIYTRVAAA 456
            +VRLVIAGP G     +DAA+  A H  RIVRL  VS+  R AL  GA  L +PS YEGF LPPLEA+AAGTP+V T  G +PE+VGD    V PGDD+A   A   V+T       +  +  AR    SW D A Q+  +Y R+A A
Sbjct:  227 EVRLVIAGPDGWGTVALDAAIDQAAHRSRIVRLGWVSETQRAALLRGAAVLAYPSVYEGFGLPPLEAMAAGTPVVTTRTGGIPEVVGDAARCVEPGDDQALAHALEEVLTDEELADQLRLRGKARAELFSWQDTAEQLARLYHRIADA 374          
BLAST of mRNA_M-pyrifera_M_contig128205.5670.1 vs. uniprot
Match: A0A3M2G0B1_ACTSX (Glycosyltransferase family 1 protein n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2G0B1_ACTSX)

HSP 1 Score: 111 bits (277), Expect = 7.840e-26
Identity = 75/152 (49.34%), Postives = 96/152 (63.16%), Query Frame = 1
Query:   10 LDELPTDVRLVIAGPPGNDAATVDAALARHG--DRIVRLPQVSDHDRVALTAGAEALLWPSRYEGFALPPLEALAAGTPIVATAVGALPELVGDI-VDLVAPGDDEAFTAAVVTALAARAPVSP--QTSARVIQHSWDDAAAQMIEIYTRVA 450
            LD LP +V LV+AGP G     + A++AR G   R+ RL  + D DRV L   A  L +PSR EG+ LPPLEA+  G P+VATAVGALPELVGD  V LV PGDD+AF AA+  A++   PV+P  +  A V +   D  A ++ + Y RVA
Sbjct:  320 LDHLPPEVGLVVAGPAGAGEGDLAASVARTGVAGRVTRLTGIGDRDRVDLLGAARVLAFPSRDEGYGLPPLEAVWLGRPVVATAVGALPELVGDRGVALVPPGDDDAFVAALAAAVSD--PVAPPDEAVAAVRRLRPDLVAGELADAYRRVA 469          
BLAST of mRNA_M-pyrifera_M_contig128205.5670.1 vs. uniprot
Match: A0A2N5JWU8_9ACTN (Glycosyltransferase family 1 protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A2N5JWU8_9ACTN)

HSP 1 Score: 104 bits (260), Expect = 7.430e-24
Identity = 68/146 (46.58%), Postives = 85/146 (58.22%), Query Frame = 1
Query:   28 DVRLVIAGPPGNDAATVDAALAR--HGDRIVRLPQVSDHDRVALTAGAEALLWPSRYEGFALPPLEALAAGTPIVATAVGALPELVGDIVDLVAPGDDEAFTAAVVTAL---AARAPVSPQTSARVIQHSWDDAAAQMIEIYTRVA 450
            D+RLVIAGP G     VDAA+ R  HG R+ RL  V+   R AL  GA A  +PS YEGF  PPLEA+ AG P+VAT  GAL E++GD   LVA GD EA   A+   L   + RA +  +  A   + SW+   A + E+Y R A
Sbjct:  222 DLRLVIAGPDGWGTEAVDAAIDRAVHGRRVARLGYVTAGQRAALLRGAAAFAFPSVYEGFGFPPLEAMVAGVPVVATTAGALREVLGDGALLVAAGDHEALAEALALVLDDESFRASLVGRGRAHAARFSWERCGAGLSELYRRAA 367          
BLAST of mRNA_M-pyrifera_M_contig128205.5670.1 vs. uniprot
Match: A0A6I3EZ72_9ACTN (Glycosyltransferase n=2 Tax=root TaxID=1 RepID=A0A6I3EZ72_9ACTN)

HSP 1 Score: 103 bits (258), Expect = 1.480e-23
Identity = 67/144 (46.53%), Postives = 88/144 (61.11%), Query Frame = 1
Query:   28 DVRLVIAGPPGNDAATVDAALA--RHGDRIVRLPQVSDHDRVALTAGAEALLWPSRYEGFALPPLEALAAGTPIVATAVGALPELVGDIVDLVAPGDDEAFTAAVVTALAARAPVSPQTSA---RVIQHSWDDAAAQMIEIYTR 444
            D+RLVIAGP G  A  V  A+A  +H DRIVRL  VSD DR AL AGA+   +PS YEGF LPPLEALA  TP+VAT+ GALPE++G        G+ E+  AA+ + L   +  +   +A   R+ + SWD     + ++Y R
Sbjct:  225 DLRLVIAGPEGWGAEAVAEAVAAAQHSDRIVRLGWVSDDDRDALLAGADVFAYPSLYEGFGLPPLEALAHRTPVVATSTGALPEVLGAAAAWADVGNIESLAAAISSVLDNESVATDIVAAGLDRLARFSWDATVDSLADLYRR 368          
BLAST of mRNA_M-pyrifera_M_contig128205.5670.1 vs. uniprot
Match: UPI001C630866 (glycosyltransferase family 4 protein n=1 Tax=Iamia sp. SCSIO 61187 TaxID=2722752 RepID=UPI001C630866)

HSP 1 Score: 103 bits (258), Expect = 1.600e-23
Identity = 69/160 (43.12%), Postives = 90/160 (56.25%), Query Frame = 1
Query:    1 IATLDELPTD---VRLVIAGPPG--NDAATVDAALARHGDRIVRLPQVSDHDRVALTAGAEALLWPSRYEGFALPPLEALAAGTPIVATAVGALPELVGDIVDLVAPGDDEAFTAAVVTALA---ARAPVSPQTSARVIQHSWDDAAAQMIEIYTRVAAA 456
            +A  D +  D   VRLV+AGP G   DA       ARH DRIVRL  V D +R  L  GA  + +PS YEGF L PLEA+AAG P+V+T  GA+PE+VGD  +LV  GD +A   A+   L+    RA +      R  +  WD    +++ +Y R AAA
Sbjct:  220 VAAFDAVADDDAEVRLVLAGPDGWGVDALAEAVNQARHRDRIVRLGWVDDDERAGLLRGATVVAYPSVYEGFGLVPLEAMAAGVPVVSTRAGAIPEVVGDAAELVDVGDVDALAEALARLLSDEGRRAELVAAGHLRRARFRWDTTVEEIVALYRRAAAA 379          
BLAST of mRNA_M-pyrifera_M_contig128205.5670.1 vs. uniprot
Match: A0A2W6CMX1_9ACTN (Glycosyltransferase family 1 protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A2W6CMX1_9ACTN)

HSP 1 Score: 103 bits (256), Expect = 3.510e-23
Identity = 65/146 (44.52%), Postives = 86/146 (58.90%), Query Frame = 1
Query:   28 DVRLVIAGPPGNDAATVDAALAR--HGDRIVRLPQVSDHDRVALTAGAEALLWPSRYEGFALPPLEALAAGTPIVATAVGALPELVGDIVDLVAPGDDEAFTAAVVTAL---AARAPVSPQTSARVIQHSWDDAAAQMIEIYTRVA 450
            D+ LV+AGP G   A  +AA+A   H +R++R+  V    R  L AGA    +PSRYEGF  PPLEA+AAG P+VAT  GALPE+VGD  +LV  GD E    A+   L   AAR  +  + +ARV   SW+   A + ++Y   A
Sbjct:  240 DLCLVVAGPDGWGTAAFEAAVAAATHRERVIRVGYVDPATRDLLLAGAAVFAYPSRYEGFGFPPLEAMAAGVPVVATTAGALPEVVGDGAELVGVGDIEGLAGAIDRLLSDGAAREALVARGTARVRTFSWEACGAGLAQLYRDAA 385          
BLAST of mRNA_M-pyrifera_M_contig128205.5670.1 vs. uniprot
Match: A0A7V8YMH1_9ACTN (Glycosyltransferase family 4 protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V8YMH1_9ACTN)

HSP 1 Score: 102 bits (254), Expect = 5.720e-23
Identity = 66/148 (44.59%), Postives = 85/148 (57.43%), Query Frame = 1
Query:   25 TDVRLVIAGPPG--NDAATVDAALARHGDRIVRLPQVSDHDRVALTAGAEALLWPSRYEGFALPPLEALAAGTPIVATAVGALPELVGDIVDLVAPGDDEAFT---AAVVTALAARAPVSPQTSARVIQHSWDDAAAQMIEIYTRVAA 453
            +D+RLV+AGP G   DA     A ARHG RI R+  +S+ DR  L AGA    +PS YEGF  PPLEA+AA  P+VA   GALPE++GD   LV P D E      AAV+     R  +  +   RV + SWD A  ++  +Y R+ A
Sbjct:  225 SDLRLVVAGPDGWDQDALLAACAAARHGSRIRRMSYLSETDRRDLLAGAAVFAYPSLYEGFGHPPLEAMAADIPVVAARAGALPEVLGDAAVLVDPRDHEQLAQGLAAVLDDADLRTKLLERGRDRVARFSWDRAGEELSRLYHRLRA 372          
BLAST of mRNA_M-pyrifera_M_contig128205.5670.1 vs. uniprot
Match: A0A537ZDW8_9ACTN (Glycosyltransferase family 4 protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A537ZDW8_9ACTN)

HSP 1 Score: 102 bits (254), Expect = 6.130e-23
Identity = 65/145 (44.83%), Postives = 88/145 (60.69%), Query Frame = 1
Query:   28 DVRLVIAGPPGNDAATVDAALA--RHGDRIVRLPQVSDHDRVALTAGAEALLWPSRYEGFALPPLEALAAGTPIVATAVGALPELVGDIVDLVAPGDDEAFTAAVVTAL---AARAPVSPQTSARVIQHSWDDAAAQMIEIYTRV 447
            ++RLVIAGP G +  T + A+A  RHGDR+  L  V+D DR  L AG     +PS YEGF  PPLEA+  G PIVA+  GALPE++GD   LV P D  A   A+  AL     RA ++ + SARV +  W  AA++  ++Y ++
Sbjct:  230 ELRLVIAGPDGWERPTFERAVANTRHGDRVAWLGYVNDADRRDLLAGCRVFAYPSLYEGFGHPPLEAMQCGVPIVASNTGALPEVLGDAALLVDPLDVAALAEALQRALDDEELRAQLTARGSARVARFDWTTAASEFTDLYAQL 374          
BLAST of mRNA_M-pyrifera_M_contig128205.5670.1 vs. uniprot
Match: A0A8F4FXV1_9ACTN (Glycosyltransferase family 4 protein n=1 Tax=Aquihabitans sp. G128 TaxID=2849779 RepID=A0A8F4FXV1_9ACTN)

HSP 1 Score: 100 bits (248), Expect = 3.140e-22
Identity = 69/160 (43.12%), Postives = 91/160 (56.88%), Query Frame = 1
Query:    1 IATLDELPTD---VRLVIAGPPGNDAATVDAAL--ARHGDRIVRLPQVSDHDRVALTAGAEALLWPSRYEGFALPPLEALAAGTPIVATAVGALPELVGDIVDLVAPGDDEAFTAAVVTALAARAPVSP---QTSARVIQHSWDDAAAQMIEIYTRVAAA 456
            +A  D L  D   +RLV+AGP G     + AA   ARH  RIVRL  VSD  R+AL  GA  + + S YEGF   PLEA+ AGTP+VATAVGALPE++ D   LV PGD +A    +   L   A V+    +   R+  ++WD     ++++Y R A A
Sbjct:  193 VAAFDVLAADDPELRLVLAGPDGLGVEALTAARERARHRRRIVRLGWVSDDQRLALLRGAAVVAYASTYEGFGFVPLEAIGAGTPVVATAVGALPEVLADGGLLVPPGDVDALAEGLARVLGDDALVADLLARGQRRLDAYTWDATVGGLVDLYRRAADA 352          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128205.5670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6B1AWW4_9ACTN1.240e-3653.38Glycosyltransferase family 4 protein n=1 Tax=Acidi... [more]
UPI001AA059E02.700e-2748.65glycosyltransferase family 4 protein n=1 Tax=Rhabd... [more]
A0A3M2G0B1_ACTSX7.840e-2649.34Glycosyltransferase family 1 protein n=1 Tax=Actin... [more]
A0A2N5JWU8_9ACTN7.430e-2446.58Glycosyltransferase family 1 protein n=1 Tax=Actin... [more]
A0A6I3EZ72_9ACTN1.480e-2346.53Glycosyltransferase n=2 Tax=root TaxID=1 RepID=A0A... [more]
UPI001C6308661.600e-2343.13glycosyltransferase family 4 protein n=1 Tax=Iamia... [more]
A0A2W6CMX1_9ACTN3.510e-2344.52Glycosyltransferase family 1 protein n=1 Tax=Acidi... [more]
A0A7V8YMH1_9ACTN5.720e-2344.59Glycosyltransferase family 4 protein n=1 Tax=Actin... [more]
A0A537ZDW8_9ACTN6.130e-2344.83Glycosyltransferase family 4 protein n=1 Tax=Actin... [more]
A0A8F4FXV1_9ACTN3.140e-2243.13Glycosyltransferase family 4 protein n=1 Tax=Aquih... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128205contigM-pyrifera_M_contig128205:42..500 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score86.3
Seed ortholog evalue1.4e-14
Seed eggNOG ortholog525909.Afer_0489
Preferred namegt4G
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Glycosyl transferase 4-like domain
EggNOG OGs2GMXE@201174,4CMVF@84992,COG0438@1,COG0438@2
COG Functional cat.M
Best tax levelAcidimicrobiia
Best eggNOG OGNA|NA|NA
Exons1
Model size459
Cds size459
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815795.3783214-CDS-M-pyrifera_M_contig128205:41..5001622815795.3783214-CDS-M-pyrifera_M_contig128205:41..500Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128205 42..500 -
1692277573.230211-CDS-M-pyrifera_M_contig128205:41..5001692277573.230211-CDS-M-pyrifera_M_contig128205:41..500Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128205 42..500 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128205.5670.1prot_M-pyrifera_M_contig128205.5670.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128205 42..500 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128205.5670.1

>prot_M-pyrifera_M_contig128205.5670.1 ID=prot_M-pyrifera_M_contig128205.5670.1|Name=mRNA_M-pyrifera_M_contig128205.5670.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=153bp
IATLDELPTDVRLVIAGPPGNDAATVDAALARHGDRIVRLPQVSDHDRVA
LTAGAEALLWPSRYEGFALPPLEALAAGTPIVATAVGALPELVGDIVDLV
APGDDEAFTAAVVTALAARAPVSPQTSARVIQHSWDDAAAQMIEIYTRVA
AA*
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mRNA from alignment at M-pyrifera_M_contig128205:42..500-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128205.5670.1 ID=mRNA_M-pyrifera_M_contig128205.5670.1|Name=mRNA_M-pyrifera_M_contig128205.5670.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=459bp|location=Sequence derived from alignment at M-pyrifera_M_contig128205:42..500- (Macrocystis pyrifera P11B4 male)
ATCGCCACACTCGACGAACTGCCGACCGACGTCAGGCTGGTCATCGCCGG CCCTCCCGGTAACGACGCCGCCACTGTCGACGCCGCCCTCGCCCGACACG GCGACCGCATCGTCCGCCTGCCCCAGGTGAGCGACCACGATCGCGTGGCG CTGACGGCCGGCGCCGAGGCCCTGCTGTGGCCGTCGCGCTACGAAGGATT CGCCCTACCCCCGCTCGAAGCCCTGGCCGCGGGAACTCCGATCGTGGCCA CCGCAGTCGGTGCGTTGCCCGAGTTGGTGGGCGACATCGTCGATCTCGTG GCTCCCGGCGACGACGAGGCCTTCACCGCCGCCGTGGTGACCGCGCTCGC CGCTCGGGCACCGGTGTCTCCGCAGACGAGCGCCCGCGTCATCCAACACT CGTGGGACGACGCCGCCGCGCAGATGATCGAGATCTACACCCGGGTCGCG GCGGCCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig128205:42..500-

>mRNA_M-pyrifera_M_contig128205.5670.1 ID=mRNA_M-pyrifera_M_contig128205.5670.1|Name=mRNA_M-pyrifera_M_contig128205.5670.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=918bp|location=Sequence derived from alignment at M-pyrifera_M_contig128205:42..500- (Macrocystis pyrifera P11B4 male)
ATCGCCACACTCGACGAACTGCCGACCGACGTCAGGCTGGTCATCGCCGG
CCCTCCCGGTAACGACGCCGCCACTGTCGACGCCGCCCTCGCCCGACACG
GCGACCGCATCGTCCGCCTGCCCCAGGTGAGCGACCACGATCGCGTGGCG
CTGACGGCCGGCGCCGAGGCCCTGCTGTGGCCGTCGCGCTACGAAGGATT
CGCCCTACCCCCGCTCGAAGCCCTGGCCGCGGGAACTCCGATCGTGGCCA
CCGCAGTCGGTGCGTTGCCCGAGTTGGTGGGCGACATCGTCGATCTCGTG
GCTCCCGGCGACGACGAGGCCTTCACCGCCGCCGTGGTGACCGCGCTCGC
CGCTCGGGCACCGGTGTCTCCGCAGACGAGCGCCCGCGTCATCCAACACT
CGTGGGACGACGCCGCCGCGCAGATGATCGAGATCTACACCCGGGTCGCG
GCGGCCTGAATCGCCACACTCGACGAACTGCCGACCGACGTCAGGCTGGT
CATCGCCGGCCCTCCCGGTAACGACGCCGCCACTGTCGACGCCGCCCTCG
CCCGACACGGCGACCGCATCGTCCGCCTGCCCCAGGTGAGCGACCACGAT
CGCGTGGCGCTGACGGCCGGCGCCGAGGCCCTGCTGTGGCCGTCGCGCTA
CGAAGGATTCGCCCTACCCCCGCTCGAAGCCCTGGCCGCGGGAACTCCGA
TCGTGGCCACCGCAGTCGGTGCGTTGCCCGAGTTGGTGGGCGACATCGTC
GATCTCGTGGCTCCCGGCGACGACGAGGCCTTCACCGCCGCCGTGGTGAC
CGCGCTCGCCGCTCGGGCACCGGTGTCTCCGCAGACGAGCGCCCGCGTCA
TCCAACACTCGTGGGACGACGCCGCCGCGCAGATGATCGAGATCTACACC
CGGGTCGCGGCGGCCTGA
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