mRNA_M-pyrifera_M_contig1282.5667.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1282.5667.1
Unique NamemRNA_M-pyrifera_M_contig1282.5667.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig1282.5667.1 vs. uniprot
Match: D8LSW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW7_ECTSI)

HSP 1 Score: 207 bits (528), Expect = 2.400e-65
Identity = 114/172 (66.28%), Postives = 137/172 (79.65%), Query Frame = 1 
Query:   10 VNLDDLEKQWEDGDHQEELKTEQQAKFERLEKRRKEAKASTGTFDPRQACGPMMDAAEIGAMAAGQADAAGPTMMFAQV---GLGLEASAPAGEGGVISKGETDDVGGRLQHLAQLGGLELAIYAIDPGSVLVSTQRGWEGKEILDFLLSRPEVSKVTWNSKDFLPPPDRDE 516
            ++L++LEKQWEDGD  EELKTE+QAKFE LE+RRK+A+A+ G FDP       M AA++GAMAAGQ DA GPTM+FAQV   GLG E       GG ISK ET+ VGGRLQ LAQLG LE+++YA+D GSVLVS+QRGWEG++ILDFLLSRPEVSKVTWNS+DF PP + +E
Sbjct:   34 MDLNELEKQWEDGDEDEELKTEEQAKFENLERRRKQAQANAGKFDPSSLGS--MTAAQVGAMAAGQKDATGPTMLFAQVRSGGLG-ETGGSGDNGGSISKEETEKVGGRLQQLAQLGSLEVSVYALDAGSVLVSSQRGWEGQQILDFLLSRPEVSKVTWNSRDFYPPKEGEE 202
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BLAST of mRNA_M-pyrifera_M_contig1282.5667.1 vs. uniprot
Match: A0A7S2RHB1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RHB1_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 6.980e-13
Identity = 54/175 (30.86%), Postives = 93/175 (53.14%), Query Frame = 1 
Query:   10 VNLDDLEKQWEDGDHQEELKTEQQAKFERLEKRRKEAKASTGTFDPRQACGPMMDAAEIGAMAAGQADAAGPTMMFAQVGLGLEASAPAGEGGVISKGETDDVGGRLQHLAQLGGLELAIYAIDPGSVLVSTQRGWEGKEILDFLLSRPEVSKVTWNSKDFLP------PPDRDE 516
            V+ D LE++W+ GD ++EL T+ +  F  +++RR++        D +      +D   +      Q   AGPTMMF ++           EGG   + E  ++ G  + L   GGL +  + I+   VL S Q+GW+G ++ +FLL++ +V+KVTW+++D++P      PP R E
Sbjct:   29 VDFDALEEEWKYGDEEDELITDDELLFREMQRRREQG------IDIKN-----LDVERV----KHQQSMAGPTMMFIEL--------RPREGGYAEE-ELYNITGIWKDLMYTGGLTVTFFNIENDKVLCSMQKGWDGIQVKEFLLTQSQVAKVTWDNQDYVPEGYDSSPPPRGE 179
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BLAST of mRNA_M-pyrifera_M_contig1282.5667.1 vs. uniprot
Match: A0A7S2FR55_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FR55_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.790e-12
Identity = 37/102 (36.27%), Postives = 58/102 (56.86%), Query Frame = 1 
Query:  205 QADAAGPTMMFAQVGLGLEASAPAGEGGVISKGETDDVGGRLQHLAQLGGLELAIYAIDPGSVLVSTQRGWEGKEILDFLLSRPEVSKVTWNSKDFLPPPDR 510
            Q   AGP MMF +    L  + P  +G    + +   + G  + L   GGLE+ +Y ++    L+S ++GW+G +   FLL +PEV+KVTW+S ++ P PDR
Sbjct:   20 QQSMAGPAMMFVE----LRPTKP--DGSAFVEEDYKWLAGSWRELMFTGGLEVQVYNVEESKFLISLKKGWDGHQAKKFLLQQPEVAKVTWDSHEYAPEPDR 115
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BLAST of mRNA_M-pyrifera_M_contig1282.5667.1 vs. uniprot
Match: A0A2R5GJ56_9STRA (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GJ56_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.150e-7
Identity = 30/86 (34.88%), Postives = 48/86 (55.81%), Query Frame = 1 
Query:  220 GPTMMFAQVGLGLEASAPAGEGGVISKGETDDVGGRLQHLAQLGGLELAIYAIDPGSVLVSTQRGWEGKEILDFLLSRPEVSKVTW 477
            G TMMF Q+             G + + ET   G RL+ LA+ GG+++++Y ++PG ++V+ Q+GW    I D +  +PEV  V W
Sbjct:   94 GATMMFVQLR------------GKLDEQETIGFGDRLKRLAKTGGVDVSVYKLEPGKLVVTLQKGWVATGIYDLISDQPEVDNVHW 167
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1282.5667.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LSW7_ECTSI2.400e-6566.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2RHB1_9STRA6.980e-1330.86Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2FR55_9STRA1.790e-1236.27Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A2R5GJ56_9STRA1.150e-734.88Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1282contigM-pyrifera_M_contig1282:20423..23716 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_001680.1
Exons5
Model size522
Cds size522
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1282.5667.1prot_M-pyrifera_M_contig1282.5667.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1282 20423..23716 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815795.2425718-CDS-M-pyrifera_M_contig1282:20422..205151622815795.2425718-CDS-M-pyrifera_M_contig1282:20422..20515Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1282 20423..20515 -
1692277573.1565247-CDS-M-pyrifera_M_contig1282:20422..205151692277573.1565247-CDS-M-pyrifera_M_contig1282:20422..20515Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1282 20423..20515 -
1622815795.2541108-CDS-M-pyrifera_M_contig1282:21260..213531622815795.2541108-CDS-M-pyrifera_M_contig1282:21260..21353Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1282 21261..21353 -
1692277573.166304-CDS-M-pyrifera_M_contig1282:21260..213531692277573.166304-CDS-M-pyrifera_M_contig1282:21260..21353Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1282 21261..21353 -
1622815795.263125-CDS-M-pyrifera_M_contig1282:21698..218661622815795.263125-CDS-M-pyrifera_M_contig1282:21698..21866Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1282 21699..21866 -
1692277573.1788235-CDS-M-pyrifera_M_contig1282:21698..218661692277573.1788235-CDS-M-pyrifera_M_contig1282:21698..21866Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1282 21699..21866 -
1622815795.2719355-CDS-M-pyrifera_M_contig1282:22976..229871622815795.2719355-CDS-M-pyrifera_M_contig1282:22976..22987Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1282 22977..22987 -
1692277573.186951-CDS-M-pyrifera_M_contig1282:22976..229871692277573.186951-CDS-M-pyrifera_M_contig1282:22976..22987Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1282 22977..22987 -
1622815795.2811065-CDS-M-pyrifera_M_contig1282:23559..237161622815795.2811065-CDS-M-pyrifera_M_contig1282:23559..23716Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1282 23560..23716 -
1692277573.1950636-CDS-M-pyrifera_M_contig1282:23559..237161692277573.1950636-CDS-M-pyrifera_M_contig1282:23559..23716Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1282 23560..23716 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1282.5667.1

>prot_M-pyrifera_M_contig1282.5667.1 ID=prot_M-pyrifera_M_contig1282.5667.1|Name=mRNA_M-pyrifera_M_contig1282.5667.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=174bp
MIQVNLDDLEKQWEDGDHQEELKTEQQAKFERLEKRRKEAKASTGTFDPR
QACGPMMDAAEIGAMAAGQADAAGPTMMFAQVGLGLEASAPAGEGGVISK
GETDDVGGRLQHLAQLGGLELAIYAIDPGSVLVSTQRGWEGKEILDFLLS
RPEVSKVTWNSKDFLPPPDRDEL*
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mRNA from alignment at M-pyrifera_M_contig1282:20423..23716-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1282.5667.1 ID=mRNA_M-pyrifera_M_contig1282.5667.1|Name=mRNA_M-pyrifera_M_contig1282.5667.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3294bp|location=Sequence derived from alignment at M-pyrifera_M_contig1282:20423..23716- (Macrocystis pyrifera P11B4 male)
ATGATCCAGGTGAACCTGGACGATCTGGAGAAGCAGTGGGAAGATGGGGA
CCACCAAGAGGAGCTCAAGACAGAACAGCAGGCGAAGTTCGAGAGGCTAG
AGAAACGGCGGAAAGAAGCGAAGGCATCCACTGGAACCTTCGACCCTAGG
CAAGCATGTCGATTCAATCGTAGGCGTACACACGAGACTCGTTACGTGTG
CCTCAAAGTGGTGGCGTTGATGTACTCGGTTCGGGACCACGTGCTGCCTG
TGGTTACTAAGACCCGTGACAACGGGAACGGGAAGTCAAAAAGTATTTGT
TTCAACAATATTGCTTTCAAAGAACAGCCGAAATACATCCCTTTTTTTGC
GCGCCGGAGAGCGAGAGGAAACCCCTGTCCACACTAATTTCTCTAGTTTT
CGTGTACCGGTTCGAACTTTCTTCCACCTTTGTCGGGCCTGTCTCTGACC
GTCATCAAAGTGTGGCGTGCTCCGAGCTCCGAGGACGTAGCCGAAGATAT
CCTCGTACCGCCGATGTGGGAGAAAAGGGAAAACATGTTGGTTTTTCTCT
TCCTTTTTTTTTAACGGCTGCAGGCAAAGCAATTTGTTTTTTCTTGTTGC
TAATTGTCAACACGCTGATAAAAAATTAGCTCGTTCGACGATAGACGCTT
GATCTCGACATAGACTCAGCCCACCCGCTTGGTGTCGGCCAAGGACAACG
AGTATAGATGACGGCCTCGAATATATCAGGTGGACCCATGGTCTAGGGGG
CGAGAGCTTACCGGCGGCGTCCTACGGTCTTTTCCCAAACTTGAAAAAAA
ACATTTTTTTTGCCATTCGAGCCGGATCGAGAAATTTTGTCATCTGTTTT
GTGCATACCAGGGGGCAATTGTTTTTGTCATGCGCCTGGCCAGCGCCCGC
CACATGTCACCGGTCATTGTTTGCAAACGGTGACCTCATTGTTTGAAAAC
GGTAACCCTAGGGTGGGTCGGAGCCCCTTACTAGCGCACTCCGTTCAGAA
TACATGACGCAGTCGTTGGTTTTGTAGATCGATGTCTGTCGAGGACTCGA
AATCTCGCCGCTTCGAACTAAACATCCGCCTGAGTTTTCTGAAGCCAGGT
TGGCCCAACATCGGCCCCGGAAATGTTTTTGTTCCGGCCTTTCCCAAAGT
TTGGGGCTTTCCGTTTTGAAAATCGTGCTCATAGCAAGCTGTATCTGGAA
AATTCTGGCGAGTTTCTTGGGAATTCAAACTTTTAAGGTAAACTTGCGTT
TCCATTGGCATAGGCCTAAGCGGGCGCTGCAGCCTTCAAGGAAGACACCG
CAGTAGCGGTGGCCCATTTCGAATAGGCTTAGATTCAGCCGCGATTGACC
AAGAAATATTCCATCTTCGGGCATTGCTATTGAAATAGTAATCCGCGAGG
AGTCGGAGGAGGAGGACAGTACGATAACGTAAACGAGTGGATCGGACCGG
ACATCCATGTTCAGTCGGCCTCCTTCCCTTAACCAGTCAACAGCACCGAT
TGCAGCCCCACAGGAACATTTAGGGCGTCATGTTAAGGGTAGAGCCCTGC
GTACTCAGTGTTGACAGTGGTTGTCTAAACACGAAGTGCCCATACTGTTG
CAGCCGAGCTCCTCCTCCTCCTCCTCCTCCATATCCCCTGCTCTGGTTTC
CCGTCGCCGTTTGTCAACACCCCACCCTTGCTATCGTCTCCTGTCGCCCG
TTGTCATCACCCCGCTCCACGTCGCACGTTCATGACACCATGTCGGGGGG
GCTCCGCACTTCCACACCACCGCCCGCCACCGAAAACAATAAACTGGCCA
CAACCAACAAAAACAACTGGCAATAACCCACAAACAGCATGTTTAACAAG
ATGGACGCCGCCGAGATCGGGGCCATGGCTGCAGGACAGGCGGATGCTGC
GGGTCCCACGATGATGTTCGCGCAGGTTGGATTGGGGTTGGAAGCGTCGG
CGCCTGCGGGCGAGGGTGGGGTGATATCAAAGGGAGAGACGGATGATGTC
GGCGGTCGTCTCCAGCACGTGAGTGGTTGTTGAACGCGCTTTCATGCAGT
ACTTGTATCATCTGGCGGACGAGTAAACAGTTAACTCAAGCTCACCACAC
TCGGCCCAACACAGCTCGGTGCCATGATTTCAGCAGCCCAGCCGCATCTT
GGTCAATTTTCGCTCGGTTGTAGACCACAACCGTACTGACGTTGCGTACG
GCTGCGGCGTCAGCGGCATGTACTGAGCACTGGTGGCGCCGCGCGTTGAC
CGACGTTTCACCACCTGCAATCACGAGCTGCGTCAAATCAGCTCACGCTC
CCTGGATTCAGCCGTTGCTTTTTTTTTGCCGTTTCTCGTTATCCGTTGCT
CTTTCGCTGCCAGCTCGCGCAACTCGGTGGACTAGAATTGGCGATCTACG
CGATCGATCCCGGCTCCGTGCTGGTGTCAACGCAGAGAGGGTGGGAGGGC
AAGGAGGTGCGAAGTCCTTGTCACACTGATCATTGGGTTCGTCCATCGAC
TTTATGCCACATTGATCTAATACCTCGTTTTTTGCGAGCTCATGACACAA
TGGGCCATTTTGTTCGTGCATCGCGGCTTTTGTCGATAATTCGTACCTCG
AAGGATAAGTACGTATAGCGTCACGACTGTATGATGGTATGCCGTTGGCC
TATGGTTTACATCAGAATTCCACGGAGACACGCGATGCAAGCACTCACAG
ATTATACTGTACGGGGATTGGTAGAAGCGCTGTTCAGACAGCAAAAGCAT
GAGCTGAGGAGAAGTCGTTCTCGCGCATCTGCCCCTTCCAGTCTTCCGCC
CGAAGTTGCTATCAATATTGGGTGCGTGCTCAGGGAGAGGATCGCGATTA
CTTGCTAAAGCAGAAAAACTTCAAGCCAGTTTGGAGAGGGAGCTCATAAT
AATGGCTTTGCTTTCGGGAGCTCCTCTCGGGAGGAGGCCTTTTTTTCTCC
GTGTTCCAACACCCATCGAACAGTGTTCTCTGTGCTCCAACACCCATCGA
ACAGTTAACCCTTCCCACTCTGTTGGCGTACCGGTATTTCCCTCGCTTGC
ATGCATGCCTGCCGCACTTCTACTCAAGTCGCTTGTGCTTCCTATAATGT
GTTTTTTTGTGTCGAGTATGCAAAATACACTTTTGCTTATTCGTAGGTTC
TGCCTTGTCCCTTCTGATCGCCGACGAATATGAAAAAAAATGCCGACGCA
GATCTTGGACTTCTTGCTGTCGCGCCCCGAAGTATCGAAGGTCACGTGGA
ACTCGAAGGATTTTCTTCCTCCGCCGGACAGAGATGAGCTGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1282:20423..23716-

>mRNA_M-pyrifera_M_contig1282.5667.1 ID=mRNA_M-pyrifera_M_contig1282.5667.1|Name=mRNA_M-pyrifera_M_contig1282.5667.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1044bp|location=Sequence derived from alignment at M-pyrifera_M_contig1282:20423..23716- (Macrocystis pyrifera P11B4 male)
ATGATCCAGGTGAACCTGGACGATCTGGAGAAGCAGTGGGAAGATGGGGA
CCACCAAGAGGAGCTCAAGACAGAACAGCAGGCGAAGTTCGAGAGGCTAG
AGAAACGGCGGAAAGAAGCGAAGGCATCCACTGGAACCTTCGACCCTAGG
CAAGCATATGATCCAGGTGAACCTGGACGATCTGGAGAAGCAGTGGGAAG
ATGGGGACCACCAAGAGGAGCTCAAGACAGAACAGCAGGCGAAGTTCGAG
AGGCTAGAGAAACGGCGGAAAGAAGCGAAGGCATCCACTGGAACCTTCGA
CCCTAGGCAAGCATGTGGACCCATGGTGGACCCATGATGGACGCCGCCGA
GATCGGGGCCATGGCTGCAGGACAGGCGGATGCTGCGGGTCCCACGATGA
TGTTCGCGCAGGTTGGATTGGGGTTGGAAGCGTCGGCGCCTGCGGGCGAG
GGTGGGGTGATATCAAAGGGAGAGACGGATGATGTCGGCGGTCGTCTCCA
GCACATGGACGCCGCCGAGATCGGGGCCATGGCTGCAGGACAGGCGGATG
CTGCGGGTCCCACGATGATGTTCGCGCAGGTTGGATTGGGGTTGGAAGCG
TCGGCGCCTGCGGGCGAGGGTGGGGTGATATCAAAGGGAGAGACGGATGA
TGTCGGCGGTCGTCTCCAGCACCTCGCGCAACTCGGTGGACTAGAATTGG
CGATCTACGCGATCGATCCCGGCTCCGTGCTGGTGTCAACGCAGAGAGGG
TGGGAGGGCAAGGAGCTCGCGCAACTCGGTGGACTAGAATTGGCGATCTA
CGCGATCGATCCCGGCTCCGTGCTGGTGTCAACGCAGAGAGGGTGGGAGG
GCAAGGAGATCTTGGACTTCTTGCTGTCGCGCCCCGAAGTATCGAAGGTC
ACGTGGAACTCGAAGGATTTTCTTCCTCCGCCGGACAGAGATGAGCTGTA
AATCTTGGACTTCTTGCTGTCGCGCCCCGAAGTATCGAAGGTCACGTGGA
ACTCGAAGGATTTTCTTCCTCCGCCGGACAGAGATGAGCTGTAA
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