mRNA_M-pyrifera_M_contig128052.5645.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128052.5645.1
Unique NamemRNA_M-pyrifera_M_contig128052.5645.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig128052.5645.1 vs. uniprot
Match: D7G2I1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2I1_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 2.740e-26
Identity = 57/89 (64.04%), Postives = 66/89 (74.16%), Query Frame = 1 
Query:    4 LDGLPRGVIGCCPVYRKFSIVGKGKRKFTINRMQVPLSLGILSSVYRAQGETIPKRVLDIRKPVDGYMDSAAVYVALSRATDASKLFLL 270
            LDGL RGVI   PV RKF+IVG  KRKFT  R Q+PL+ G LSSVYR+QG+T+PK +LDIR+P    +D AAVYVALSRAT    L LL
Sbjct:  202 LDGLQRGVIAVAPVERKFTIVGINKRKFTFKRRQIPLTAGCLSSVYRSQGQTMPKIILDIRRPPGHAVDCAAVYVALSRATGLGDLNLL 290
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BLAST of mRNA_M-pyrifera_M_contig128052.5645.1 vs. uniprot
Match: D7G3U9_ECTSI (ATP-dependent DNA helicase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U9_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 5.900e-26
Identity = 57/89 (64.04%), Postives = 66/89 (74.16%), Query Frame = 1 
Query:    4 LDGLPRGVIGCCPVYRKFSIVGKGKRKFTINRMQVPLSLGILSSVYRAQGETIPKRVLDIRKPVDGYMDSAAVYVALSRATDASKLFLL 270
            LDGL RGVI   PV RKF+IVG  KRKFT  R Q+PL+ G LSSVYR+QG+T+PK +LDIR+P    +D AAVYVALSRAT    L LL
Sbjct: 1909 LDGLQRGVIAVAPVERKFTIVGINKRKFTFKRRQIPLTAGCLSSVYRSQGQTMPKIILDIRRPPGHAVDCAAVYVALSRATGLGDLNLL 1997
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BLAST of mRNA_M-pyrifera_M_contig128052.5645.1 vs. uniprot
Match: A0A6H5KXW4_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXW4_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.680e-11
Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = 1 
Query:    4 LDGLPRGVIGCCPVYRKFSIVGKGKRKFTINRMQVPLSLGILSSVYRAQGETIPKRVLDIRKP 192
            L+GL RGV+   PV ++ +I G GK KF   R Q+PL  G +SSV+R+QG+T+PK +LDI  P
Sbjct:  682 LEGLDRGVVAIAPVEKECTIEGIGKGKFIFKRRQLPLPAGCVSSVFRSQGQTMPKIILDIHPP 744
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BLAST of mRNA_M-pyrifera_M_contig128052.5645.1 vs. uniprot
Match: A0A6H5JCW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCW5_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 3.080e-6
Identity = 28/49 (57.14%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:    1 KLDGLPRGVIGCCPVYRKFSIVGKGKRKFTINRMQVPLSLGILSSVYRA 147
            +LDGLPRGV+   PV + FS+VG GKRKFTI R Q+  + G   SVY A
Sbjct:  104 RLDGLPRGVVAFAPVEKPFSVVGVGKRKFTIQRRQLLPTAG---SVYVA 149
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BLAST of mRNA_M-pyrifera_M_contig128052.5645.1 vs. uniprot
Match: A0A0C2XCC1_AMAMK (Uncharacterized protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2XCC1_AMAMK)

HSP 1 Score: 49.7 bits (117), Expect = 7.520e-6
Identity = 24/61 (39.34%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:   88 TINRMQVPLSLGILSSVYRAQGETIPKRVLDIRKPVDGYMDSAAVYVALSRATDASKLFLL 270
            TI+R Q+PL+     + YRAQG+T+P+ ++D+ +P  G +     YVALSR++    + LL
Sbjct:    3 TISRRQLPLTPAYAFTDYRAQGQTLPRVIVDLGRPPTGKLTPFNAYVALSRSSGRETIKLL 63
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BLAST of mRNA_M-pyrifera_M_contig128052.5645.1 vs. uniprot
Match: A0A0D0D896_9AGAM (Uncharacterized protein n=1 Tax=Paxillus rubicundulus Ve08.2h10 TaxID=930991 RepID=A0A0D0D896_9AGAM)

HSP 1 Score: 48.5 bits (114), Expect = 2.630e-5
Identity = 28/80 (35.00%), Postives = 44/80 (55.00%), Query Frame = 1 
Query:   25 VIGCCPVYRKFSIVGKGKRKFT--INRMQVPLSLGILSSVYRAQGETIPKRVLDIRKPVDGYMDSAAVYVALSRATDASK 258
            VI   P+ + F I  +  +  T  + + Q+P++       YRAQG+T+P  ++DIR P  G      +YVALSR+T  S+
Sbjct:    1 VIPIKPISKSFRITVQEGKTVTCAMTQKQLPITAAYTCMGYRAQGQTLPAVIIDIRTPPTGGRSLFNLYVALSRSTGPSE 80
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128052.5645.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G2I1_ECTSI2.740e-2664.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3U9_ECTSI5.900e-2664.04ATP-dependent DNA helicase n=2 Tax=Ectocarpus sili... [more]
A0A6H5KXW4_9PHAE1.680e-1150.79ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5JCW5_9PHAE3.080e-657.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0C2XCC1_AMAMK7.520e-639.34Uncharacterized protein (Fragment) n=1 Tax=Amanita... [more]
A0A0D0D896_9AGAM2.630e-535.00Uncharacterized protein n=1 Tax=Paxillus rubicundu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128052contigM-pyrifera_M_contig128052:66..338 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.8
Seed ortholog evalue6.9e-22
Seed eggNOG ortholog2880.D7G3U9
KEGG koko:K15255,ko:K20647
Hectar predicted targeting categoryother localisation
EggNOG free text desc.G-quadruplex DNA unwinding
EggNOG OGsCOG0507@1,KOG0987@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029,ko03032,ko04131
Exons1
Model size273
Cds size273
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815794.2341158-CDS-M-pyrifera_M_contig128052:65..3381622815794.2341158-CDS-M-pyrifera_M_contig128052:65..338Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128052 66..338 +
1692277572.6600893-CDS-M-pyrifera_M_contig128052:65..3381692277572.6600893-CDS-M-pyrifera_M_contig128052:65..338Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128052 66..338 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128052.5645.1prot_M-pyrifera_M_contig128052.5645.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128052 66..338 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128052.5645.1

>prot_M-pyrifera_M_contig128052.5645.1 ID=prot_M-pyrifera_M_contig128052.5645.1|Name=mRNA_M-pyrifera_M_contig128052.5645.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=91bp
KLDGLPRGVIGCCPVYRKFSIVGKGKRKFTINRMQVPLSLGILSSVYRAQ
GETIPKRVLDIRKPVDGYMDSAAVYVALSRATDASKLFLL*
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mRNA from alignment at M-pyrifera_M_contig128052:66..338+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128052.5645.1 ID=mRNA_M-pyrifera_M_contig128052.5645.1|Name=mRNA_M-pyrifera_M_contig128052.5645.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=273bp|location=Sequence derived from alignment at M-pyrifera_M_contig128052:66..338+ (Macrocystis pyrifera P11B4 male)
AAGCTGGACGGGCTCCCTCGAGGTGTCATCGGCTGCTGTCCGGTTTACAG
GAAGTTCTCCATTGTTGGTAAAGGCAAGCGTAAATTCACCATCAACAGAA
TGCAGGTGCCTCTGTCTCTTGGTATTCTTTCCTCAGTCTATCGAGCACAA
GGCGAAACCATCCCTAAACGTGTGCTCGACATTCGTAAGCCAGTAGACGG
CTATATGGACAGCGCGGCTGTCTACGTTGCTCTGTCCCGAGCGACCGATG
CCAGCAAGCTCTTCTTGCTGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig128052:66..338+

>mRNA_M-pyrifera_M_contig128052.5645.1 ID=mRNA_M-pyrifera_M_contig128052.5645.1|Name=mRNA_M-pyrifera_M_contig128052.5645.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=546bp|location=Sequence derived from alignment at M-pyrifera_M_contig128052:66..338+ (Macrocystis pyrifera P11B4 male)
AAGCTGGACGGGCTCCCTCGAGGTGTCATCGGCTGCTGTCCGGTTTACAG
GAAGTTCTCCATTGTTGGTAAAGGCAAGCGTAAATTCACCATCAACAGAA
TGCAGGTGCCTCTGTCTCTTGGTATTCTTTCCTCAGTCTATCGAGCACAA
GGCGAAACCATCCCTAAACGTGTGCTCGACATTCGTAAGCCAGTAGACGG
CTATATGGACAGCGCGGCTGTCTACGTTGCTCTGTCCCGAGCGACCGATG
CCAGCAAGCTCTTCTTGCTGTAGAAGCTGGACGGGCTCCCTCGAGGTGTC
ATCGGCTGCTGTCCGGTTTACAGGAAGTTCTCCATTGTTGGTAAAGGCAA
GCGTAAATTCACCATCAACAGAATGCAGGTGCCTCTGTCTCTTGGTATTC
TTTCCTCAGTCTATCGAGCACAAGGCGAAACCATCCCTAAACGTGTGCTC
GACATTCGTAAGCCAGTAGACGGCTATATGGACAGCGCGGCTGTCTACGT
TGCTCTGTCCCGAGCGACCGATGCCAGCAAGCTCTTCTTGCTGTAG
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