mRNA_M-pyrifera_M_contig128019.5641.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128019.5641.1
Unique NamemRNA_M-pyrifera_M_contig128019.5641.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig128019.5641.1 vs. uniprot
Match: A0A518A3K2_9PLAN (ECF RNA polymerase sigma factor SigW n=19 Tax=Planctomycetaceae TaxID=126 RepID=A0A518A3K2_9PLAN)

HSP 1 Score: 209 bits (532), Expect = 7.470e-67
Identity = 114/116 (98.28%), Postives = 115/116 (99.14%), Query Frame = 1
Query:    1 RRHLGAQKRDARREVKQKRRVFSASTSFQIADVLLGDLTSPSQAALKEELARQLHEALESMNEIDREILVLRHFEELSNLEASEVLEIEPKTASMRYFRALTRLRSILVQIPGIIE 348
            RRHLGAQKRD RREVKQKRRVFSASTSFQIADVLLGDLTSPSQAALKEELA+QLHEALESMNEIDREILVLRHFEELSNLEASEVLEIEPKTASMRYFRALTRLRSILVQIPGIIE
Sbjct:   95 RRHLGAQKRDVRREVKQKRRVFSASTSFQIADVLLGDLTSPSQAALKEELAKQLHEALESMNEIDREILVLRHFEELSNLEASEVLEIEPKTASMRYFRALTRLRSILVQIPGIIE 210          
BLAST of mRNA_M-pyrifera_M_contig128019.5641.1 vs. uniprot
Match: A0A517VXS8_9PLAN (ECF RNA polymerase sigma factor SigW n=4 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VXS8_9PLAN)

HSP 1 Score: 195 bits (496), Expect = 2.290e-61
Identity = 104/116 (89.66%), Postives = 113/116 (97.41%), Query Frame = 1
Query:    1 RRHLGAQKRDARREVKQKRRVFSASTSFQIADVLLGDLTSPSQAALKEELARQLHEALESMNEIDREILVLRHFEELSNLEASEVLEIEPKTASMRYFRALTRLRSILVQIPGIIE 348
            RRHLGAQKRD RREVKQKRR+FSASTSFQIAD+LLG+L+SPSQAALKEEL+ QLHEALES+NE+DREILVLRHFEELSNLEA+EVLEIEPK ASMRYFRALTRLRS+LVQIPGIIE
Sbjct:   96 RRHLGAQKRDVRREVKQKRRIFSASTSFQIADMLLGNLSSPSQAALKEELSIQLHEALESLNEMDREILVLRHFEELSNLEAAEVLEIEPKAASMRYFRALTRLRSVLVQIPGIIE 211          
BLAST of mRNA_M-pyrifera_M_contig128019.5641.1 vs. uniprot
Match: A0A350KIX9_9PLAN (RNA polymerase subunit sigma-24 (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A350KIX9_9PLAN)

HSP 1 Score: 184 bits (466), Expect = 3.230e-58
Identity = 101/108 (93.52%), Postives = 104/108 (96.30%), Query Frame = 1
Query:   25 RDARREVKQKRRVFSASTSFQIADVLLGDLTSPSQAALKEELARQLHEALESMNEIDREILVLRHFEELSNLEASEVLEIEPKTASMRYFRALTRLRSILVQIPGIIE 348
            RD RREVK KRRVFSASTSFQIA+VLLGD+TSPSQAALKEELA QL EALES+NEIDREILVLRHFEELSNLEASEVLEIEPKTASMRYFRALTRLRSILVQIPGIIE
Sbjct:    2 RDVRREVKAKRRVFSASTSFQIANVLLGDMTSPSQAALKEELAIQLREALESLNEIDREILVLRHFEELSNLEASEVLEIEPKTASMRYFRALTRLRSILVQIPGIIE 109          
BLAST of mRNA_M-pyrifera_M_contig128019.5641.1 vs. uniprot
Match: A0A1P8WS40_9PLAN (Sigma-W factor n=1 Tax=Fuerstiella marisgermanici TaxID=1891926 RepID=A0A1P8WS40_9PLAN)

HSP 1 Score: 122 bits (305), Expect = 1.840e-32
Identity = 66/116 (56.90%), Postives = 86/116 (74.14%), Query Frame = 1
Query:    1 RRHLGAQKRDARREVKQKRRVFSASTSFQIADVLLGDLTSPSQAALKEELARQLHEALESMNEIDREILVLRHFEELSNLEASEVLEIEPKTASMRYFRALTRLRSILVQIPGIIE 348
            RRHLG QKRDA +E    +   S STSF ++  LLG LTSP+QAAL+EEL++QL  AL+SMNEIDRE+L LRHFE+L+N E +++L I  + AS RY RAL RL+ +L  +PG +E
Sbjct:   94 RRHLGTQKRDAAKEFSIHKGWSSESTSFSLSFHLLGHLTSPTQAALREELSQQLKTALDSMNEIDREVLALRHFEQLTNRETAQILSISDQAASDRYMRALGRLKGVLKALPGFVE 209          
BLAST of mRNA_M-pyrifera_M_contig128019.5641.1 vs. uniprot
Match: A0A2E8D913_9PLAN (RNA polymerase subunit sigma-24 n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E8D913_9PLAN)

HSP 1 Score: 119 bits (298), Expect = 2.570e-31
Identity = 63/116 (54.31%), Postives = 83/116 (71.55%), Query Frame = 1
Query:    1 RRHLGAQKRDARREVKQKRRVFSASTSFQIADVLLGDLTSPSQAALKEELARQLHEALESMNEIDREILVLRHFEELSNLEASEVLEIEPKTASMRYFRALTRLRSILVQIPGIIE 348
            RRHLGAQ RD  REV   R  ++ +TS  +A  LLG +TSPSQA  K E+AR L E+LE M+ ID+E+L LRHFEEL+N E +EVL I+ K AS+RY RA+ RL+ +L ++PG  +
Sbjct:   95 RRHLGAQMRDINREVSMHRPAYTQATSVCLAAQLLGSMTSPSQAVQKAEMARLLEESLEGMDPIDQEVLALRHFEELTNSEVAEVLSIQQKAASIRYVRAIARLKDVLKRVPGFFD 210          
BLAST of mRNA_M-pyrifera_M_contig128019.5641.1 vs. uniprot
Match: A0A3E0PW74_9BACT (RNA polymerase subunit sigma-24 n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3E0PW74_9BACT)

HSP 1 Score: 118 bits (296), Expect = 4.180e-31
Identity = 64/113 (56.64%), Postives = 83/113 (73.45%), Query Frame = 1
Query:    1 RRHLGAQKRDARREVKQKRRVFSASTSFQIADVLLGDLTSPSQAALKEELARQLHEALESMNEIDREILVLRHFEELSNLEASEVLEIEPKTASMRYFRALTRLRSILVQIPG 339
            RRHLGAQ RDARRE + +      STS  +   L+G LTSPSQAAL+EEL+ ++ +AL +M+E+D+E+L +RHFEELSN E +  LEI  + A+MRY RAL R+R ILV IPG
Sbjct:   93 RRHLGAQIRDARREARSRPASMGDSTSLSLTVHLIGHLTSPSQAALREELSEKIDDALSTMSELDQEVLAMRHFEELSNSEIAAALEISEQAAAMRYIRALGRIRDILVTIPG 205          
BLAST of mRNA_M-pyrifera_M_contig128019.5641.1 vs. uniprot
Match: A0A518B2U1_9BACT (RNA polymerase sigma factor n=1 Tax=Planctomycetes bacterium Pan216 TaxID=2527975 RepID=A0A518B2U1_9BACT)

HSP 1 Score: 118 bits (296), Expect = 4.400e-31
Identity = 65/116 (56.03%), Postives = 83/116 (71.55%), Query Frame = 1
Query:    1 RRHLGAQKRDARREVKQKRRVFSASTSFQIADVLLGDLTSPSQAALKEELARQLHEALESMNEIDREILVLRHFEELSNLEASEVLEIEPKTASMRYFRALTRLRSILVQIPGIIE 348
            RRHLG++KRDA REV  +    +A++S  I  + +G LTSPSQAA+K EL   L EALE MN IDRE+L LRH EEL+N E +EVL IEPK AS+RY RA+ RL+ +L + PG  +
Sbjct:   94 RRHLGSKKRDAGREVSIRGGRQAAASSLSIVGMFVGQLTSPSQAAIKAELTGLLEEALEQMNPIDREVLSLRHLEELTNSEVAEVLNIEPKAASIRYIRAIGRLKGVLKRFPGFFD 209          
BLAST of mRNA_M-pyrifera_M_contig128019.5641.1 vs. uniprot
Match: A0A7C2JZG7_9PLAN (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Schlesneria paludicola TaxID=360056 RepID=A0A7C2JZG7_9PLAN)

HSP 1 Score: 119 bits (299), Expect = 5.920e-31
Identity = 67/116 (57.76%), Postives = 86/116 (74.14%), Query Frame = 1
Query:    1 RRHLGAQKRDARREVKQKRRVFSASTSFQIADVLLGDLTSPSQAALKEELARQLHEALESMNEIDREILVLRHFEELSNLEASEVLEIEPKTASMRYFRALTRLRSILVQIPGIIE 348
            RR+  A+ RDA RE          STSF I+  LLG LTSPSQAALK+EL++QL  ALESM+E+DRE+L+LRHFEEL+N E + VL+I  + AS+RY RAL RL+ IL+ IPG+I+
Sbjct:  127 RRYFEAKSRDATRERSTHSPWGGESTSFSISSHLLGHLTSPSQAALKQELSQQLQVALESMSELDREVLMLRHFEELTNQETARVLQISQQAASLRYVRALARLKQILLSIPGLID 242          
BLAST of mRNA_M-pyrifera_M_contig128019.5641.1 vs. uniprot
Match: A0A2E7LBZ6_9PLAN (RNA polymerase subunit sigma-24 n=2 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E7LBZ6_9PLAN)

HSP 1 Score: 118 bits (295), Expect = 6.390e-31
Identity = 62/116 (53.45%), Postives = 85/116 (73.28%), Query Frame = 1
Query:    1 RRHLGAQKRDARREVKQKRRVFSASTSFQIADVLLGDLTSPSQAALKEELARQLHEALESMNEIDREILVLRHFEELSNLEASEVLEIEPKTASMRYFRALTRLRSILVQIPGIIE 348
            RRHLGAQKR AR+EV+  R+ +   TS  +A  L+G L++PSQA ++ EL   + +AL+ M+EIDRE+L LRHFEEL+N E +EVL ++   AS RY RALTRLR+IL ++PG  +
Sbjct:   95 RRHLGAQKRSARQEVRSVRQAWGQGTSVSLARYLVGQLSTPSQAVIRAELLDHVQKALDRMDEIDREVLALRHFEELTNNEVAEVLGLQKSAASNRYVRALTRLRTILSEVPGFFD 210          
BLAST of mRNA_M-pyrifera_M_contig128019.5641.1 vs. uniprot
Match: A0A836RKV5_9PLAN (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A836RKV5_9PLAN)

HSP 1 Score: 115 bits (287), Expect = 7.190e-31
Identity = 67/110 (60.91%), Postives = 80/110 (72.73%), Query Frame = 1
Query:   13 GAQKRDARREVKQKRRVFSASTSFQIADVLLGDLTSPSQAALKEELARQLHEALESMNEIDREILVLRHFEELSNLEASEVLEIEPKTASMRYFRALTRLRSILVQIPGI 342
            GAQ R A RE+       S +TS  +A  LLG LTSPSQAA++ ELARQL EALE MN IDRE+L LRHFEEL+N E +EVL I+ K AS+RY RAL RL+ IL Q+PG+
Sbjct:    1 GAQMRAADREIPI-HNALSNTTSVSLAAQLLGHLTSPSQAAMRHELARQLEEALERMNPIDREVLALRHFEELTNSEVAEVLGIQQKAASIRYVRALKRLKEILSQVPGM 109          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128019.5641.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A518A3K2_9PLAN7.470e-6798.28ECF RNA polymerase sigma factor SigW n=19 Tax=Plan... [more]
A0A517VXS8_9PLAN2.290e-6189.66ECF RNA polymerase sigma factor SigW n=4 Tax=Gimes... [more]
A0A350KIX9_9PLAN3.230e-5893.52RNA polymerase subunit sigma-24 (Fragment) n=1 Tax... [more]
A0A1P8WS40_9PLAN1.840e-3256.90Sigma-W factor n=1 Tax=Fuerstiella marisgermanici ... [more]
A0A2E8D913_9PLAN2.570e-3154.31RNA polymerase subunit sigma-24 n=1 Tax=Planctomyc... [more]
A0A3E0PW74_9BACT4.180e-3156.64RNA polymerase subunit sigma-24 n=1 Tax=Planctomyc... [more]
A0A518B2U1_9BACT4.400e-3156.03RNA polymerase sigma factor n=1 Tax=Planctomycetes... [more]
A0A7C2JZG7_9PLAN5.920e-3157.76Sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]
A0A2E7LBZ6_9PLAN6.390e-3153.45RNA polymerase subunit sigma-24 n=2 Tax=Planctomyc... [more]
A0A836RKV5_9PLAN7.190e-3160.91Sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128019contigM-pyrifera_M_contig128019:2..352 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score200.7
Seed ortholog evalue3.8e-49
Seed eggNOG ortholog344747.PM8797T_15646
KEGG koko:K03088
Hectar predicted targeting categoryother localisation
EggNOG free text desc.RNA polymerase sigma-70 factor, Planctomycetaceae-specific subfamily 1
EggNOG OGs2IZS9@203682,COG1595@1,COG1595@2
COG Functional cat.K
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021
Exons1
Model size351
Cds size351
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815794.076564-CDS-M-pyrifera_M_contig128019:1..3521622815794.076564-CDS-M-pyrifera_M_contig128019:1..352Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128019 2..352 +
1692277572.6168656-CDS-M-pyrifera_M_contig128019:1..3521692277572.6168656-CDS-M-pyrifera_M_contig128019:1..352Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128019 2..352 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128019.5641.1prot_M-pyrifera_M_contig128019.5641.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128019 2..352 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128019.5641.1

>prot_M-pyrifera_M_contig128019.5641.1 ID=prot_M-pyrifera_M_contig128019.5641.1|Name=mRNA_M-pyrifera_M_contig128019.5641.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=117bp
RRHLGAQKRDARREVKQKRRVFSASTSFQIADVLLGDLTSPSQAALKEEL
ARQLHEALESMNEIDREILVLRHFEELSNLEASEVLEIEPKTASMRYFRA
LTRLRSILVQIPGIIE*
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mRNA from alignment at M-pyrifera_M_contig128019:2..352+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128019.5641.1 ID=mRNA_M-pyrifera_M_contig128019.5641.1|Name=mRNA_M-pyrifera_M_contig128019.5641.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=351bp|location=Sequence derived from alignment at M-pyrifera_M_contig128019:2..352+ (Macrocystis pyrifera P11B4 male)
CGTCGGCATCTTGGTGCACAAAAGCGTGATGCCCGCCGCGAGGTGAAACA AAAACGAAGGGTCTTTTCGGCTTCGACCTCGTTTCAGATCGCTGATGTTC TCCTGGGAGATTTAACTTCCCCCAGTCAGGCGGCCCTTAAAGAAGAGCTG GCCCGACAGTTACATGAAGCCCTGGAAAGCATGAACGAAATCGACCGGGA AATTCTGGTTCTGAGACATTTTGAAGAACTCTCCAACCTGGAGGCTTCCG AGGTACTCGAAATCGAACCCAAAACAGCCAGCATGAGATATTTCAGAGCA TTAACCAGATTGCGCTCCATTCTGGTACAAATTCCCGGTATTATTGAATG A
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig128019:2..352+

>mRNA_M-pyrifera_M_contig128019.5641.1 ID=mRNA_M-pyrifera_M_contig128019.5641.1|Name=mRNA_M-pyrifera_M_contig128019.5641.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=702bp|location=Sequence derived from alignment at M-pyrifera_M_contig128019:2..352+ (Macrocystis pyrifera P11B4 male)
CGTCGGCATCTTGGTGCACAAAAGCGTGATGCCCGCCGCGAGGTGAAACA
AAAACGAAGGGTCTTTTCGGCTTCGACCTCGTTTCAGATCGCTGATGTTC
TCCTGGGAGATTTAACTTCCCCCAGTCAGGCGGCCCTTAAAGAAGAGCTG
GCCCGACAGTTACATGAAGCCCTGGAAAGCATGAACGAAATCGACCGGGA
AATTCTGGTTCTGAGACATTTTGAAGAACTCTCCAACCTGGAGGCTTCCG
AGGTACTCGAAATCGAACCCAAAACAGCCAGCATGAGATATTTCAGAGCA
TTAACCAGATTGCGCTCCATTCTGGTACAAATTCCCGGTATTATTGAATG
ACGTCGGCATCTTGGTGCACAAAAGCGTGATGCCCGCCGCGAGGTGAAAC
AAAAACGAAGGGTCTTTTCGGCTTCGACCTCGTTTCAGATCGCTGATGTT
CTCCTGGGAGATTTAACTTCCCCCAGTCAGGCGGCCCTTAAAGAAGAGCT
GGCCCGACAGTTACATGAAGCCCTGGAAAGCATGAACGAAATCGACCGGG
AAATTCTGGTTCTGAGACATTTTGAAGAACTCTCCAACCTGGAGGCTTCC
GAGGTACTCGAAATCGAACCCAAAACAGCCAGCATGAGATATTTCAGAGC
ATTAACCAGATTGCGCTCCATTCTGGTACAAATTCCCGGTATTATTGAAT
GA
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