mRNA_M-pyrifera_M_contig127948.5627.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127948.5627.1
Unique NamemRNA_M-pyrifera_M_contig127948.5627.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig127948.5627.1 vs. uniprot
Match: A0A7S3UYE5_9STRA (Hypothetical protein n=2 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3UYE5_9STRA)

HSP 1 Score: 153 bits (386), Expect = 1.710e-41
Identity = 70/120 (58.33%), Postives = 90/120 (75.00%), Query Frame = 1
Query:   16 VVHTVGPRYNPGYLTAAESALHSCYLNSLRLVKEAGLRSVAIPCLYEARKQYPREDAAHIAIRTIRRFLEHFGDNIDRLVLVVDTDADWAVYSKLLPLYCPRTPEEEAAAALLLPKDTGS 375
            ++HT+GP+Y   Y TAAE+ALH CY + L L+KE  LR++  PC+Y  RKQYPR+DAAHIAIRTIRRFLEH G ++D +VL  +   D A+Y +LLPLYCPR  EEE AA  LLP++ G+
Sbjct:  150 IIHTIGPKYTEEYRTAAENALHCCYKSCLGLLKENKLRTIVFPCIYSKRKQYPRKDAAHIAIRTIRRFLEHHGSDLDAVVLYFEESEDMAIYRELLPLYCPRNKEEELAAKRLLPQNVGN 269          
BLAST of mRNA_M-pyrifera_M_contig127948.5627.1 vs. uniprot
Match: A0A6G0XK69_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XK69_9STRA)

HSP 1 Score: 146 bits (368), Expect = 2.860e-39
Identity = 68/116 (58.62%), Postives = 85/116 (73.28%), Query Frame = 1
Query:    1 LPRSSVVHTVGPRYNPGYLTAAESALHSCYLNSLRLVKEAGLRSVAIPCLYEARKQYPREDAAHIAIRTIRRFLEHFGDNIDRLVLVVDTDADWAVYSKLLPLYCPRTPEEEAAAA 348
            LP + ++HTV P+YN  Y  AAE+ALH CY N LR+ KE GL +VAIPCLY  +K YPREDA H+A+RT+RRFLEH GD  D ++L VD   DW +YSK LP+Y PR+ +E A AA
Sbjct:  105 LPATKIIHTVTPKYNIKYKIAAENALHGCYRNVLRVAKEEGLTTVAIPCLYSKKKGYPREDALHVALRTVRRFLEHHGDAFDVILLCVDDQLDWHLYSKWLPMYFPRSKDEIALAA 220          
BLAST of mRNA_M-pyrifera_M_contig127948.5627.1 vs. uniprot
Match: A0A3R7GRC0_9STRA (Macro domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GRC0_9STRA)

HSP 1 Score: 139 bits (351), Expect = 1.050e-38
Identity = 68/127 (53.54%), Postives = 91/127 (71.65%), Query Frame = 1
Query:    1 LPRSSVVHTVGPRYNPGYLTAAESALHSCYLNSLRLVKEAGLRSVAIPCLYEARKQYPREDAAHIAIRTIRRFLEHFGDNIDRLVLVVDTDADWAVYSKLLPLYCPRTPEEEAAAAL-LLPKDTGSY 378
            LP   ++HTVGPR+ P Y  AAE ALHSCY + L + KE GLRSVAI C+Y  RK YPRE+A+H+A+RT+RRFLE++ D+ DR++L V++  D  VY ++LPLY PRT  E+  +   L  +D GSY
Sbjct:  122 LPAKFILHTVGPRFLPKYHNAAEHALHSCYRSVLSIAKENGLRSVAIGCIYTQRKGYPREEASHVAVRTVRRFLEYYADDFDRIILCVESLQDEFVYERVLPLYFPRTIREQRESQKELATRDLGSY 248          
BLAST of mRNA_M-pyrifera_M_contig127948.5627.1 vs. uniprot
Match: A0A3R6WMC9_9STRA (Macro domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6WMC9_9STRA)

HSP 1 Score: 139 bits (349), Expect = 4.470e-37
Identity = 69/126 (54.76%), Postives = 87/126 (69.05%), Query Frame = 1
Query:    1 LPRSSVVHTVGPRYNPGYLTAAESALHSCYLNSLRLVKEAGLRSVAIPCLYEARKQYPREDAAHIAIRTIRRFLEHFGDNIDRLVLVVDTDADWAVYSKLLPLYCPRTPEEEAAAALLLPKDTGSY 378
            +P   ++HTVGPRYN  Y  AAE+ALHS Y N LR+ KE    +VA PC+Y  +K YPR+DA H+A+RTIRRFLEHFGD  D +VL VD   D+ +Y + LPLY PR+  EE AA + L  DT S+
Sbjct:   89 MPCRKLIHTVGPRYNEKYRIAAENALHSSYRNCLRVAKEERAATVAFPCIYRKKKNYPRDDAVHVALRTIRRFLEHFGDAFDLIVLCVDDSNDFRLYHECLPLYFPRSVGEEIAATVAL--DTLSH 212          
BLAST of mRNA_M-pyrifera_M_contig127948.5627.1 vs. uniprot
Match: A0A024URJ2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024URJ2_9STRA)

HSP 1 Score: 140 bits (354), Expect = 5.020e-37
Identity = 70/126 (55.56%), Postives = 87/126 (69.05%), Query Frame = 1
Query:    1 LPRSSVVHTVGPRYNPGYLTAAESALHSCYLNSLRLVKEAGLRSVAIPCLYEARKQYPREDAAHIAIRTIRRFLEHFGDNIDRLVLVVDTDADWAVYSKLLPLYCPRTPEEEAAAALLLPKDTGSY 378
            LP   ++HTVGPRYN  Y  AAE+ALHS Y N LR+ KE    +VA PC+Y  +K YPR+DA H+A+RTIRRFLEHFGD  D +VL VD   D+ +Y + LPLY PR+  EE AA + L  DT S+
Sbjct:  122 LPSKKLIHTVGPRYNEKYRIAAENALHSSYRNCLRVAKEERAATVAFPCIYRKKKNYPRDDAVHVALRTIRRFLEHFGDAFDLIVLCVDDSNDFRLYHECLPLYFPRSVGEEIAATVAL--DTLSH 245          
BLAST of mRNA_M-pyrifera_M_contig127948.5627.1 vs. uniprot
Match: A0A329SRG1_9STRA (Macro domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SRG1_9STRA)

HSP 1 Score: 140 bits (353), Expect = 9.200e-37
Identity = 70/129 (54.26%), Postives = 93/129 (72.09%), Query Frame = 1
Query:    1 LPRSSVVHTVGPRYNPGYLTAAESALHSCYLNSLRLVKEAGLRSVAIPCLYEARKQYPREDAAHIAIRTIRRFLEHFGDNIDRLVLVVDTDADWAVYSKLLPLYCPRTPEEEAAAALLLP-KDTG-SYG 381
            LP   ++HTVGPRY   Y  AAE ALHSCY + L + +E GLRSVA  C+Y  RK YPRE+AAHIA RT+RR++EH+GD  DR++L +D+  D +VY ++LPLY PRT +E+  + LLL  +D G S+G
Sbjct:  113 LPAKFILHTVGPRYLSKYNNAAEHALHSCYRSVLAVARENGLRSVATGCIYTPRKGYPREEAAHIAARTVRRYMEHYGDEFDRVILCMDSVQDMSVYERVLPLYFPRTVKEQQESLLLLATRDLGDSFG 241          
BLAST of mRNA_M-pyrifera_M_contig127948.5627.1 vs. uniprot
Match: A0A2D4BRW5_PYTIN (Macro domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BRW5_PYTIN)

HSP 1 Score: 140 bits (354), Expect = 9.410e-37
Identity = 69/125 (55.20%), Postives = 89/125 (71.20%), Query Frame = 1
Query:    1 LPRSSVVHTVGPRYNPGYLTAAESALHSCYLNSLRLVKEAGLRSVAIPCLYEARKQYPREDAAHIAIRTIRRFLEHFGDNIDRLVLVVDTDADWAVYSKLLPLYCPRTPEE-EAAAALLLPKDTG 372
            LP   ++HTVGPRY+  Y TAAESALH CY ++L    E  LRSVA+PCLY  RK YPR++A H+A RT+RRFLEHFGD+++ +VL VD+  D  +Y  +LPLY PR  EE + +A LLL +  G
Sbjct:  125 LPAKKLIHTVGPRYSAKYRTAAESALHMCYRSTLSAAVEHRLRSVAVPCLYSKRKGYPRDEATHVAARTVRRFLEHFGDDLELVVLCVDSTEDQLLYEAILPLYFPRDXEELQRSATLLLGRALG 249          
BLAST of mRNA_M-pyrifera_M_contig127948.5627.1 vs. uniprot
Match: A0A425D7Q4_9STRA (Macro domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425D7Q4_9STRA)

HSP 1 Score: 135 bits (340), Expect = 1.520e-36
Identity = 62/114 (54.39%), Postives = 82/114 (71.93%), Query Frame = 1
Query:   16 VVHTVGPRYNPGYLTAAESALHSCYLNSLRLVKEAGLRSVAIPCLYEARKQYPREDAAHIAIRTIRRFLEHFGDNIDRLVLVVDTDADWAVYSKLLPLYCPRTPEEEAAAALLL 357
            ++HTVGPRYN  Y  AAE+ALHS Y N LR+ KE    +VA PC+Y  +K YPR++A H+A+RTIRRFLEHFGD+ D +VL V+   D  +Y + LP+Y PR+ ++EAA  L L
Sbjct:  133 LIHTVGPRYNDKYKNAAENALHSSYRNCLRVAKEERASTVAFPCIYRRKKNYPRDEATHVALRTIRRFLEHFGDSFDLIVLCVEDTGDLQLYQEWLPVYFPRSTDDEAAGKLAL 246          
BLAST of mRNA_M-pyrifera_M_contig127948.5627.1 vs. uniprot
Match: A0A5D6XYD4_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XYD4_9STRA)

HSP 1 Score: 139 bits (351), Expect = 1.840e-36
Identity = 66/119 (55.46%), Postives = 86/119 (72.27%), Query Frame = 1
Query:    1 LPRSSVVHTVGPRYNPGYLTAAESALHSCYLNSLRLVKEAGLRSVAIPCLYEARKQYPREDAAHIAIRTIRRFLEHFGDNIDRLVLVVDTDADWAVYSKLLPLYCPRTPEEEAAAALLL 357
            LP S ++HTVGPRYN  Y+ AAE+ALH CY N+L + KE  +RSVA+ C+Y  RK YPR++AAHIA RT+RRFLEH+ D+ D +VL VD+  D  +Y  +LPLY PRT ++E   A  L
Sbjct:  118 LPASYIIHTVGPRYNLRYVNAAENALHMCYRNTLSVAKEEKIRSVALSCIYTRRKGYPRDEAAHIAARTVRRFLEHYSDDFDCVVLCVDSLEDQMIYESVLPLYFPRTHDDELKQATRL 236          
BLAST of mRNA_M-pyrifera_M_contig127948.5627.1 vs. uniprot
Match: W2QFF9_PHYPN (Macro domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2QFF9_PHYPN)

HSP 1 Score: 139 bits (351), Expect = 1.850e-36
Identity = 69/129 (53.49%), Postives = 92/129 (71.32%), Query Frame = 1
Query:    1 LPRSSVVHTVGPRYNPGYLTAAESALHSCYLNSLRLVKEAGLRSVAIPCLYEARKQYPREDAAHIAIRTIRRFLEHFGDNIDRLVLVVDTDADWAVYSKLLPLYCPRT-PEEEAAAALLLPKDTG-SYG 381
            LP   ++HTVGPRY P Y  AAE ALHSCY + L + +E GLRSVA  C+Y  RK YPRE+AAHIA RT+RR+LEH+G   DR++L +++  D +VY ++LPLY PR   E++ +  LL P+D G S+G
Sbjct:  114 LPAQFILHTVGPRYLPKYHNAAEHALHSCYRSVLTVARENGLRSVATGCIYTPRKGYPREEAAHIAARTVRRYLEHYGGEFDRVILCMESVQDMSVYERVLPLYFPRNFREQQESQKLLAPRDLGNSFG 242          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127948.5627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3UYE5_9STRA1.710e-4158.33Hypothetical protein n=2 Tax=Aplanochytrium stocch... [more]
A0A6G0XK69_9STRA2.860e-3958.62Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A3R7GRC0_9STRA1.050e-3853.54Macro domain-containing protein n=3 Tax=Phytophtho... [more]
A0A3R6WMC9_9STRA4.470e-3754.76Macro domain-containing protein n=1 Tax=Aphanomyce... [more]
A0A024URJ2_9STRA5.020e-3755.56Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A329SRG1_9STRA9.200e-3754.26Macro domain-containing protein n=2 Tax=Phytophtho... [more]
A0A2D4BRW5_PYTIN9.410e-3755.20Macro domain-containing protein n=1 Tax=Pythium in... [more]
A0A425D7Q4_9STRA1.520e-3654.39Macro domain-containing protein n=2 Tax=Aphanomyce... [more]
A0A5D6XYD4_9STRA1.840e-3655.46Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
W2QFF9_PHYPN1.850e-3653.49Macro domain-containing protein n=9 Tax=Phytophtho... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127948contigM-pyrifera_M_contig127948:27..500 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.9
Seed ortholog evalue1e-31
Seed eggNOG ortholog157072.XP_008862053.1
Preferred nameGDAP2
KEGG koko:K18470
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0008150,GO:0010033,GO:0032526,GO:0033993,GO:0042221,GO:0050896,GO:1901700
EggNOG free text desc.ADP-D-ribose binding
EggNOG OGsCOG2110@1,KOG2633@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons2
Model size384
Cds size384
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815793.5089622-CDS-M-pyrifera_M_contig127948:26..2081622815793.5089622-CDS-M-pyrifera_M_contig127948:26..208Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127948 27..208 -
1692277572.3674645-CDS-M-pyrifera_M_contig127948:26..2081692277572.3674645-CDS-M-pyrifera_M_contig127948:26..208Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127948 27..208 -
1622815793.5190196-CDS-M-pyrifera_M_contig127948:298..5001622815793.5190196-CDS-M-pyrifera_M_contig127948:298..500Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127948 299..500 -
1692277572.3834834-CDS-M-pyrifera_M_contig127948:298..5001692277572.3834834-CDS-M-pyrifera_M_contig127948:298..500Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127948 299..500 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127948.5627.1prot_M-pyrifera_M_contig127948.5627.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127948 27..500 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127948.5627.1

>prot_M-pyrifera_M_contig127948.5627.1 ID=prot_M-pyrifera_M_contig127948.5627.1|Name=mRNA_M-pyrifera_M_contig127948.5627.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=128bp
LPRSSVVHTVGPRYNPGYLTAAESALHSCYLNSLRLVKEAGLRSVAIPCL
YEARKQYPREDAAHIAIRTIRRFLEHFGDNIDRLVLVVDTDADWAVYSKL
LPLYCPRTPEEEAAAALLLPKDTGSYG*
back to top

mRNA from alignment at M-pyrifera_M_contig127948:27..500-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127948.5627.1 ID=mRNA_M-pyrifera_M_contig127948.5627.1|Name=mRNA_M-pyrifera_M_contig127948.5627.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig127948:27..500- (Macrocystis pyrifera P11B4 male)
CTCCCGCGCAGCTCCGTCGTGCACACCGTGGGGCCCCGCTACAACCCAGG ATACTTGACTGCGGCAGAGAGCGCATTGCACTCGTGCTACCTCAACTCAC TGCGCCTGGTGAAGGAGGCTGGCTTGCGATCTGTGGCCATTCCATGCCTG TACGAGGCGAGGAAACAGTATCCACGGGAAGACGCAGCCCACATCGCTAT TCGTACGTCGTCGCGCAAGATCGTTGTGGGCGATGGTGGACGTGCACGTC TTTCTGTCCGTTCGCTCACGTTCATACTCCCATGCGCTGTAGGCACCATC CGGAGATTCCTGGAGCACTTTGGTGACAACATCGACCGGCTGGTGCTGGT GGTTGATACTGACGCAGATTGGGCGGTGTACAGCAAGCTGCTGCCATTGT ACTGCCCACGAACGCCAGAAGAGGAGGCCGCCGCTGCTCTCCTCCTCCCC AAAGACACAGGTTCGTATGGGTAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig127948:27..500-

>mRNA_M-pyrifera_M_contig127948.5627.1 ID=mRNA_M-pyrifera_M_contig127948.5627.1|Name=mRNA_M-pyrifera_M_contig127948.5627.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=768bp|location=Sequence derived from alignment at M-pyrifera_M_contig127948:27..500- (Macrocystis pyrifera P11B4 male)
CTCCCGCGCAGCTCCGTCGTGCACACCGTGGGGCCCCGCTACAACCCAGG
ATACTTGACTGCGGCAGAGAGCGCATTGCACTCGTGCTACCTCAACTCAC
TGCGCCTGGTGAAGGAGGCTGGCTTGCGATCTGTGGCCATTCCATGCCTG
TACGAGGCGAGGAAACAGTATCCACGGGAAGACGCAGCCCACATCGCTAT
TCCTCCCGCGCAGCTCCGTCGTGCACACCGTGGGGCCCCGCTACAACCCA
GGATACTTGACTGCGGCAGAGAGCGCATTGCACTCGTGCTACCTCAACTC
ACTGCGCCTGGTGAAGGAGGCTGGCTTGCGATCTGTGGCCATTCCATGCC
TGTACGAGGCGAGGAAACAGTATCCACGGGAAGACGCAGCCCACATCGCT
ATTCGCACCATCCGGAGATTCCTGGAGCACTTTGGTGACAACATCGACCG
GCTGGTGCTGGTGGTTGATACTGACGCAGATTGGGCGGTGTACAGCAAGC
TGCTGCCATTGTACTGCCCACGAACGCCAGAAGAGGAGGCCGCCGCTGCT
CTCCTCCTCCCCAAAGACACAGGTTCGTATGGGTAGGCACCATCCGGAGA
TTCCTGGAGCACTTTGGTGACAACATCGACCGGCTGGTGCTGGTGGTTGA
TACTGACGCAGATTGGGCGGTGTACAGCAAGCTGCTGCCATTGTACTGCC
CACGAACGCCAGAAGAGGAGGCCGCCGCTGCTCTCCTCCTCCCCAAAGAC
ACAGGTTCGTATGGGTAG
back to top