mRNA_M-pyrifera_M_contig127917.5624.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127917.5624.1
Unique NamemRNA_M-pyrifera_M_contig127917.5624.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig127917.5624.1 vs. uniprot
Match: A0A351ENW8_9ACTN (MFS domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A351ENW8_9ACTN)

HSP 1 Score: 87.4 bits (215), Expect = 3.110e-17
Identity = 49/163 (30.06%), Postives = 92/163 (56.44%), Query Frame = 1 
Query:   19 GLTALIIPVVVIALRTPPSAGLGRGRISLAGLREVPRWKPITLAYVMFGAVAAGYTSFLAEALEEDGGLSRNAVANIYIGLGLSSLIGAPVAGWISDRAGRRRALMAVMMMIITVATTVALVTGPGLALVVVTL--GGMWSSYPALTATYMRDHLEDRAFGAA 501
            G  AL++  +    +  P+  +    +  + ++++PRW+ +T+AY MFG ++AG+ +F+  ALEE G ++ +    ++  +G++ ++ AP AG ISDR GR   L   +++++     + +V G  +A +   L      SS PAL A ++RD L+ R+F  A
Sbjct:  161 GFAALVLVAMFTIAKFAPTERIVARGVDFSIIKQIPRWRQVTMAYAMFGGMSAGFATFIVAALEEHGNVAESNSPIVFSAMGIAGMVAAPFAGAISDRIGRLTVLRTTLLLLVV--ANLCVVAGGQVATIAGALLYSSGASSIPALIAAHVRDSLDSRSFSQA 321
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BLAST of mRNA_M-pyrifera_M_contig127917.5624.1 vs. uniprot
Match: A0A2E6DLE7_9ACTN (MFS domain-containing protein n=2 Tax=Acidimicrobiia TaxID=84992 RepID=A0A2E6DLE7_9ACTN)

HSP 1 Score: 65.1 bits (157), Expect = 2.790e-9
Identity = 51/169 (30.18%), Postives = 82/169 (48.52%), Query Frame = 1 
Query:    1 VYLVDAGLTALIIPVVVIALRTPPSAGLGRGRISLAGLREVPR---WKPITLAYVMFGAVAAGYTSFLAEALEEDGGLSRNAVANIYIGLGLSSLIGAPVAGWISDRAGRRRALMAVMMMIITVATTVALVTGPGLALVVVTLGGMWSSYPALTATYMRDHLEDRAFGA 498
            ++L++    + I+ V+ + LR   S  L  G    AG+R + R   WK     Y+ F  VAA +  F   +LE D  +SR    +++  +G+  ++GA   G +SDR GR R +  V     T    V +      AL  V  G    + P+LTAT++RD +++  F A
Sbjct:  174 IWLIETFAASAILAVLYVVLRDDVSPRLPLG----AGIRAIKRLQGWKTAVFFYMAFAFVAASWFQFFGLSLENDHNMSREFTTHMWALMGIGGVLGALTFGRLSDRLGRPRTMCIVTAAGATTCLLVLVGEMWAAALAAVIYGTSAMAIPSLTATFVRDQVDEHDFTA 338
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127917.5624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A351ENW8_9ACTN3.110e-1730.06MFS domain-containing protein n=1 Tax=Acidimicrobi... [more]
A0A2E6DLE7_9ACTN2.790e-930.18MFS domain-containing protein n=2 Tax=Acidimicrobi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127917contigM-pyrifera_M_contig127917:1..501 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score64.3
Seed ortholog evalue6.1e-08
Seed eggNOG ortholog1380393.JHVP01000005_gene3627
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.transmembrane transporter activity
EggNOG OGsCOG2271@1,COG2271@2
COG Functional cat.G
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size501
Cds size501
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815793.294352-CDS-M-pyrifera_M_contig127917:0..5011622815793.294352-CDS-M-pyrifera_M_contig127917:0..501Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127917 1..501 -
1692277572.2452042-CDS-M-pyrifera_M_contig127917:0..5011692277572.2452042-CDS-M-pyrifera_M_contig127917:0..501Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127917 1..501 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127917.5624.1prot_M-pyrifera_M_contig127917.5624.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127917 1..501 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127917.5624.1

>prot_M-pyrifera_M_contig127917.5624.1 ID=prot_M-pyrifera_M_contig127917.5624.1|Name=mRNA_M-pyrifera_M_contig127917.5624.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=167bp
VYLVDAGLTALIIPVVVIALRTPPSAGLGRGRISLAGLREVPRWKPITLA
YVMFGAVAAGYTSFLAEALEEDGGLSRNAVANIYIGLGLSSLIGAPVAGW
ISDRAGRRRALMAVMMMIITVATTVALVTGPGLALVVVTLGGMWSSYPAL
TATYMRDHLEDRAFGAA
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mRNA from alignment at M-pyrifera_M_contig127917:1..501-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127917.5624.1 ID=mRNA_M-pyrifera_M_contig127917.5624.1|Name=mRNA_M-pyrifera_M_contig127917.5624.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=501bp|location=Sequence derived from alignment at M-pyrifera_M_contig127917:1..501- (Macrocystis pyrifera P11B4 male)
GTCTACCTCGTCGACGCCGGCCTCACCGCACTGATCATCCCCGTGGTCGT
CATCGCCCTGCGCACCCCGCCCTCGGCGGGACTCGGACGAGGGCGGATCT
CGCTCGCCGGCCTGCGCGAGGTACCGCGGTGGAAGCCGATCACCCTCGCC
TACGTGATGTTCGGAGCCGTCGCCGCCGGCTACACGTCGTTCCTCGCCGA
GGCGTTGGAGGAAGACGGCGGACTGAGCCGGAACGCCGTCGCGAACATCT
ACATCGGCCTCGGTCTGAGTTCCCTCATCGGCGCCCCGGTCGCAGGCTGG
ATCTCCGACCGTGCCGGCCGCCGACGAGCCCTGATGGCCGTGATGATGAT
GATCATCACGGTGGCGACGACCGTGGCCCTCGTGACCGGGCCCGGTCTCG
CACTCGTCGTCGTCACCTTGGGCGGCATGTGGTCGAGCTACCCGGCGTTG
ACGGCGACCTACATGCGCGACCATCTCGAAGACCGAGCGTTCGGTGCGGC
C
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127917:1..501-

>mRNA_M-pyrifera_M_contig127917.5624.1 ID=mRNA_M-pyrifera_M_contig127917.5624.1|Name=mRNA_M-pyrifera_M_contig127917.5624.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1002bp|location=Sequence derived from alignment at M-pyrifera_M_contig127917:1..501- (Macrocystis pyrifera P11B4 male)
GTCTACCTCGTCGACGCCGGCCTCACCGCACTGATCATCCCCGTGGTCGT
CATCGCCCTGCGCACCCCGCCCTCGGCGGGACTCGGACGAGGGCGGATCT
CGCTCGCCGGCCTGCGCGAGGTACCGCGGTGGAAGCCGATCACCCTCGCC
TACGTGATGTTCGGAGCCGTCGCCGCCGGCTACACGTCGTTCCTCGCCGA
GGCGTTGGAGGAAGACGGCGGACTGAGCCGGAACGCCGTCGCGAACATCT
ACATCGGCCTCGGTCTGAGTTCCCTCATCGGCGCCCCGGTCGCAGGCTGG
ATCTCCGACCGTGCCGGCCGCCGACGAGCCCTGATGGCCGTGATGATGAT
GATCATCACGGTGGCGACGACCGTGGCCCTCGTGACCGGGCCCGGTCTCG
CACTCGTCGTCGTCACCTTGGGCGGCATGTGGTCGAGCTACCCGGCGTTG
ACGGCGACCTACATGCGCGACCATCTCGAAGACCGAGCGTTCGGTGCGGC
CGTCTACCTCGTCGACGCCGGCCTCACCGCACTGATCATCCCCGTGGTCG
TCATCGCCCTGCGCACCCCGCCCTCGGCGGGACTCGGACGAGGGCGGATC
TCGCTCGCCGGCCTGCGCGAGGTACCGCGGTGGAAGCCGATCACCCTCGC
CTACGTGATGTTCGGAGCCGTCGCCGCCGGCTACACGTCGTTCCTCGCCG
AGGCGTTGGAGGAAGACGGCGGACTGAGCCGGAACGCCGTCGCGAACATC
TACATCGGCCTCGGTCTGAGTTCCCTCATCGGCGCCCCGGTCGCAGGCTG
GATCTCCGACCGTGCCGGCCGCCGACGAGCCCTGATGGCCGTGATGATGA
TGATCATCACGGTGGCGACGACCGTGGCCCTCGTGACCGGGCCCGGTCTC
GCACTCGTCGTCGTCACCTTGGGCGGCATGTGGTCGAGCTACCCGGCGTT
GACGGCGACCTACATGCGCGACCATCTCGAAGACCGAGCGTTCGGTGCGG
CC
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