mRNA_M-pyrifera_M_contig12780.5608.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12780.5608.1
Unique NamemRNA_M-pyrifera_M_contig12780.5608.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12780.5608.1 vs. uniprot
Match: A0A7S3PFX4_9STRA (Hypothetical protein n=2 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PFX4_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 7.570e-17
Identity = 37/88 (42.05%), Postives = 61/88 (69.32%), Query Frame = 1 
Query:    1 MSKMITDRMQTMVNRSLRGVVGLSSKSMVSNVALWRETGVPPLAATTAGRRARAYQKARILNTRVRQLVDNPFKGAKKTWLSGTVSWV 264
            M+K +T   Q +++ SL+ ++G+S K  VS + LW E G+PP+AA  A RRAR +QKA+ L T++  L+ +P++  + TW+SGT+ W+
Sbjct:   51 MNKSLTRHFQQLLDESLKIMLGVSPKMPVSKLVLWEEFGIPPIAALAASRRARVFQKAQNLRTKITTLIQSPYRSLQWTWISGTMRWL 138
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12780.5608.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3PFX4_9STRA7.570e-1742.05Hypothetical protein n=2 Tax=Aplanochytrium stocch... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12780contigM-pyrifera_M_contig12780:56..322 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size267
Cds size267
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815792.513732-CDS-M-pyrifera_M_contig12780:55..3221622815792.513732-CDS-M-pyrifera_M_contig12780:55..322Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12780 56..322 +
1692277571.848245-CDS-M-pyrifera_M_contig12780:55..3221692277571.848245-CDS-M-pyrifera_M_contig12780:55..322Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12780 56..322 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12780.5608.1prot_M-pyrifera_M_contig12780.5608.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12780 56..322 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12780.5608.1

>prot_M-pyrifera_M_contig12780.5608.1 ID=prot_M-pyrifera_M_contig12780.5608.1|Name=mRNA_M-pyrifera_M_contig12780.5608.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=89bp
MSKMITDRMQTMVNRSLRGVVGLSSKSMVSNVALWRETGVPPLAATTAGR
RARAYQKARILNTRVRQLVDNPFKGAKKTWLSGTVSWVN
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mRNA from alignment at M-pyrifera_M_contig12780:56..322+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12780.5608.1 ID=mRNA_M-pyrifera_M_contig12780.5608.1|Name=mRNA_M-pyrifera_M_contig12780.5608.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=267bp|location=Sequence derived from alignment at M-pyrifera_M_contig12780:56..322+ (Macrocystis pyrifera P11B4 male)
ATGAGTAAGATGATTACGGACAGGATGCAGACTATGGTCAACCGGTCGCT
ACGGGGGGTAGTGGGATTGTCGTCGAAATCCATGGTATCCAACGTGGCAC
TGTGGAGGGAGACGGGGGTGCCACCACTAGCCGCAACCACGGCTGGAAGA
AGGGCCCGAGCATACCAGAAGGCGCGTATACTAAACACCAGGGTACGGCA
ACTGGTGGACAACCCCTTCAAAGGTGCCAAGAAGACGTGGCTCTCCGGGA
CAGTCTCCTGGGTGAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12780:56..322+

>mRNA_M-pyrifera_M_contig12780.5608.1 ID=mRNA_M-pyrifera_M_contig12780.5608.1|Name=mRNA_M-pyrifera_M_contig12780.5608.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=534bp|location=Sequence derived from alignment at M-pyrifera_M_contig12780:56..322+ (Macrocystis pyrifera P11B4 male)
ATGAGTAAGATGATTACGGACAGGATGCAGACTATGGTCAACCGGTCGCT
ACGGGGGGTAGTGGGATTGTCGTCGAAATCCATGGTATCCAACGTGGCAC
TGTGGAGGGAGACGGGGGTGCCACCACTAGCCGCAACCACGGCTGGAAGA
AGGGCCCGAGCATACCAGAAGGCGCGTATACTAAACACCAGGGTACGGCA
ACTGGTGGACAACCCCTTCAAAGGTGCCAAGAAGACGTGGCTCTCCGGGA
CAGTCTCCTGGGTGAACATGAGTAAGATGATTACGGACAGGATGCAGACT
ATGGTCAACCGGTCGCTACGGGGGGTAGTGGGATTGTCGTCGAAATCCAT
GGTATCCAACGTGGCACTGTGGAGGGAGACGGGGGTGCCACCACTAGCCG
CAACCACGGCTGGAAGAAGGGCCCGAGCATACCAGAAGGCGCGTATACTA
AACACCAGGGTACGGCAACTGGTGGACAACCCCTTCAAAGGTGCCAAGAA
GACGTGGCTCTCCGGGACAGTCTCCTGGGTGAAC
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