mRNA_M-pyrifera_M_contig127782.5601.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127782.5601.1
Unique NamemRNA_M-pyrifera_M_contig127782.5601.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127782.5601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127782contigM-pyrifera_M_contig127782:4..501 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score61.2
Seed ortholog evalue5.2e-07
Seed eggNOG ortholog479433.Caci_1345
KEGG koko:K01191
KEGG Pathwayko00511,map00511
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PFAM Glycoside hydrolase, family 38
EggNOG OGs2GM02@201174,COG0383@1,COG0383@2,COG1470@1,COG1470@2
EC3.2.1.24
COG Functional cat.G
CAZyGH38
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Exons1
Model size498
Cds size498
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815792.2177868-CDS-M-pyrifera_M_contig127782:3..5011622815792.2177868-CDS-M-pyrifera_M_contig127782:3..501Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127782 4..501 -
1692277571.723303-CDS-M-pyrifera_M_contig127782:3..5011692277571.723303-CDS-M-pyrifera_M_contig127782:3..501Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127782 4..501 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127782.5601.1prot_M-pyrifera_M_contig127782.5601.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127782 4..501 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127782.5601.1

>prot_M-pyrifera_M_contig127782.5601.1 ID=prot_M-pyrifera_M_contig127782.5601.1|Name=mRNA_M-pyrifera_M_contig127782.5601.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=166bp
TLLAWEPTGARWSGTLQSSTGMLEAQSTDVLERPQRPWSVAGGGVSLEAN
GFQVLPLWFLPNVTKPLDGLARLGREAEPHGVLETRYWDERRGAAPVRKM
PIGLLLRGSLTGDTPAIEVVVSNHTTDRTVQGTVNLEATSGLTFGPQSVY
YSLGAGEQQVETIQLA
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mRNA from alignment at M-pyrifera_M_contig127782:4..501-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127782.5601.1 ID=mRNA_M-pyrifera_M_contig127782.5601.1|Name=mRNA_M-pyrifera_M_contig127782.5601.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=498bp|location=Sequence derived from alignment at M-pyrifera_M_contig127782:4..501- (Macrocystis pyrifera P11B4 male)
ACCCTCCTCGCATGGGAGCCGACGGGTGCGCGCTGGTCGGGTACCCTGCA
AAGCAGCACCGGCATGTTGGAAGCCCAGAGCACCGATGTATTGGAGCGGC
CTCAGAGGCCCTGGTCGGTCGCCGGTGGCGGTGTCTCGCTGGAGGCGAAC
GGCTTTCAGGTATTGCCTCTGTGGTTTTTACCCAACGTGACCAAACCCCT
CGACGGACTTGCCCGCCTTGGTCGGGAGGCCGAGCCCCACGGCGTGCTGG
AAACCCGTTACTGGGACGAGCGGCGGGGTGCGGCACCGGTCCGGAAAATG
CCAATCGGCCTCCTGCTGCGAGGCTCCTTGACCGGCGATACCCCCGCCAT
CGAAGTGGTCGTGAGTAACCACACCACCGACCGCACGGTGCAGGGAACGG
TCAATCTCGAGGCCACCTCGGGCCTGACATTCGGACCCCAGAGCGTCTAC
TATAGCCTTGGGGCGGGCGAGCAACAGGTGGAGACGATTCAACTGGCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127782:4..501-

>mRNA_M-pyrifera_M_contig127782.5601.1 ID=mRNA_M-pyrifera_M_contig127782.5601.1|Name=mRNA_M-pyrifera_M_contig127782.5601.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=996bp|location=Sequence derived from alignment at M-pyrifera_M_contig127782:4..501- (Macrocystis pyrifera P11B4 male)
ACCCTCCTCGCATGGGAGCCGACGGGTGCGCGCTGGTCGGGTACCCTGCA
AAGCAGCACCGGCATGTTGGAAGCCCAGAGCACCGATGTATTGGAGCGGC
CTCAGAGGCCCTGGTCGGTCGCCGGTGGCGGTGTCTCGCTGGAGGCGAAC
GGCTTTCAGGTATTGCCTCTGTGGTTTTTACCCAACGTGACCAAACCCCT
CGACGGACTTGCCCGCCTTGGTCGGGAGGCCGAGCCCCACGGCGTGCTGG
AAACCCGTTACTGGGACGAGCGGCGGGGTGCGGCACCGGTCCGGAAAATG
CCAATCGGCCTCCTGCTGCGAGGCTCCTTGACCGGCGATACCCCCGCCAT
CGAAGTGGTCGTGAGTAACCACACCACCGACCGCACGGTGCAGGGAACGG
TCAATCTCGAGGCCACCTCGGGCCTGACATTCGGACCCCAGAGCGTCTAC
TATAGCCTTGGGGCGGGCGAGCAACAGGTGGAGACGATTCAACTGGCAAC
CCTCCTCGCATGGGAGCCGACGGGTGCGCGCTGGTCGGGTACCCTGCAAA
GCAGCACCGGCATGTTGGAAGCCCAGAGCACCGATGTATTGGAGCGGCCT
CAGAGGCCCTGGTCGGTCGCCGGTGGCGGTGTCTCGCTGGAGGCGAACGG
CTTTCAGGTATTGCCTCTGTGGTTTTTACCCAACGTGACCAAACCCCTCG
ACGGACTTGCCCGCCTTGGTCGGGAGGCCGAGCCCCACGGCGTGCTGGAA
ACCCGTTACTGGGACGAGCGGCGGGGTGCGGCACCGGTCCGGAAAATGCC
AATCGGCCTCCTGCTGCGAGGCTCCTTGACCGGCGATACCCCCGCCATCG
AAGTGGTCGTGAGTAACCACACCACCGACCGCACGGTGCAGGGAACGGTC
AATCTCGAGGCCACCTCGGGCCTGACATTCGGACCCCAGAGCGTCTACTA
TAGCCTTGGGGCGGGCGAGCAACAGGTGGAGACGATTCAACTGGCA
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