mRNA_M-pyrifera_M_contig127780.5600.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127780.5600.1
Unique NamemRNA_M-pyrifera_M_contig127780.5600.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig127780.5600.1 vs. uniprot
Match: A0A812XQS4_9DINO (Cyp4e1 protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812XQS4_9DINO)

HSP 1 Score: 124 bits (311), Expect = 2.500e-31
Identity = 64/148 (43.24%), Postives = 96/148 (64.86%), Query Frame = 1
Query:    1 NWSYTFFKPILGDGLVTSEGEKWRVHRNMLMPHLMHYERLQGLLPVFQEAANTLVDDLSASASSTGKPVRLELDRTFRKVTLDVIAAVTVGMDSSKASGLPPLFSAIIDELNERLFQPWRQYLPLERDHRKRLETLDNMVLEMIHERR 444
            +W+Y  F+PILG GLVT++G KW+ HR ML P   H++ L+ L PVF  AA  L    S  ++       +EL  TFR VTL+VI+ V VG+   +A  LP LF +++DELN+R+ QPWR+++  E +H+ +L+ L+ +V  +I +RR
Sbjct:  115 DWTYDTFRPILGRGLVTTKGAKWQKHRRMLKP-AFHFDALRRLHPVFTSAAERLCRKWSGLSAERNA---VELGLTFRTVTLEVISEVAVGLGPDEAGVLPVLFESVLDELNQRVMQPWRRFMWTEAEHQSKLKQLNELVFAIIAQRR 258          
BLAST of mRNA_M-pyrifera_M_contig127780.5600.1 vs. uniprot
Match: A0A813D1F4_9DINO (CYP4C1 protein n=5 Tax=Sar TaxID=2698737 RepID=A0A813D1F4_9DINO)

HSP 1 Score: 121 bits (304), Expect = 2.300e-29
Identity = 65/150 (43.33%), Postives = 98/150 (65.33%), Query Frame = 1
Query:    1 NWSYTFFKPILGDGLVTSEGEKWRVHRNMLMPHLMHYERLQGLLPVFQEAANTLVDDLSASASSTGKPVRLELDRTFRKVTLDVIAAVTVGMDSSKASGLPPLFSAIIDELNERLFQPWRQYLPLERDHRKRLETLDNMVLEMIHERRKQ 450
            NWSY+FF PILG+GLVT+ G  W      L P   H   L+  +  F  AA+ L +  +A  S +     +ELD TFR+VTL+VIA V++G+  + AS LP LF  IIDELN+R+++PWR ++P E  H++R+  L+++VL +I +R+++
Sbjct:  148 NWSYSFFGPILGEGLVTASGASWAKQNQALKPKFKH-AALRQYMRAFTGAASRLREAWAAMPSGSV----VELDSTFRQVTLEVIAEVSLGLTPADASVLPELFGEIIDELNQRMWKPWRAFMPGEITHQRRIRELNDIVLGLIRKRKQE 292          
BLAST of mRNA_M-pyrifera_M_contig127780.5600.1 vs. uniprot
Match: A0A7S1KYZ0_NEODS (Hypothetical protein (Fragment) n=2 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1KYZ0_NEODS)

HSP 1 Score: 78.2 bits (191), Expect = 1.720e-15
Identity = 45/123 (36.59%), Postives = 70/123 (56.91%), Query Frame = 1
Query:    7 SYTFFKPILGDGLVTSEGEKWRVHRNMLMPHLMHYERLQGLLPVFQEAANTLVDDLSASASSTGKPVRLELDRTFRKVTLDVIAAVTVGMDSSKASG-LPPLFSAIIDELNERLFQPWRQYLP 372
            S+  FK +LG GLVTSEGEKWR H  ML+   M  + L  +  V   AA+ L++ + A+     K    +LD  +R +TL VI    + + +++    LP L+  ++ E N R++ PWRQ++P
Sbjct:   30 SFKHFKCLLGQGLVTSEGEKWR-HGRMLLSQAMRIDVLALVPTVGVNAAHRLIEHVHAAGV---KGDTADLDELYRHLTLHVIGEAVLSLPAAEVDRVLPKLYLPVVHEANARVWAPWRQFMP 148          
BLAST of mRNA_M-pyrifera_M_contig127780.5600.1 vs. uniprot
Match: A0A059LQZ8_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LQZ8_9CHLO)

HSP 1 Score: 79.0 bits (193), Expect = 4.850e-15
Identity = 52/153 (33.99%), Postives = 79/153 (51.63%), Query Frame = 1
Query:    1 NWSYTFFKPILGDGLVTSEGEKWRVHRNMLMPHLMHYERLQGLLPVFQEAANTLVDDLSASASS-TGKPVRLELDRTFRKVTLDVIAAVTVGMDSSKASG-LPPLFSAIIDELNERLFQPWRQYLPLE-RDHRKRLETLDNMVLEMIHERRKQ 450
            ++SY  F PILG GLVTS+G  W+  R +LM      + L  +LP+   A    VD LSA   +  G+   ++++  FR++TL VI    + +   +    LP LF  +++E N R   PWR   PL    +  R+  LD  + ++I  RR Q
Sbjct:   85 DFSYRNFLPILGTGLVTSDGSHWQQQR-LLMAPAFRIDMLDAILPISSRA----VDRLSARLEAFRGEARPVDMEDEFRRLTLQVIGEAILSLTPEQCDAVLPQLFLPVMEESNRRTLHPWRHAYPLHVLRYNSRVRALDAFIAQVIDRRRAQ 232          
BLAST of mRNA_M-pyrifera_M_contig127780.5600.1 vs. uniprot
Match: G0TS86_TRYVY (Putative cytochrome P450 n=1 Tax=Trypanosoma vivax (strain Y486) TaxID=1055687 RepID=G0TS86_TRYVY)

HSP 1 Score: 79.0 bits (193), Expect = 2.920e-14
Identity = 48/149 (32.21%), Postives = 81/149 (54.36%), Query Frame = 1
Query:    7 SYTFFKPILGDGLVTSEGEKWRVHRNMLMPHLMHYERLQGLLPVFQEAANTLVDDLSASASSTGKPVRLELDRTFRKVTLDVIAAVTVGMDSSKASGL-PPLFSAIIDELNERLFQPWRQYLPLERDHRKR---LETLDNMVLEMIHER 441
            SY  F  +LG GLVT+EG+KWR  R ML  H +  + L+ +  +  +A   ++D +    ++TG P  ++L+  FR +TL VI    + +   +   + P L+  I+ E N  +++PWR  LP     R+R   L+ L+ ++  +I ER
Sbjct:  147 SYKHFMCLLGSGLVTAEGDKWRKGRLMLS-HSLRIDILEDIPEMAVKATGRILDKMP---TTTGGPSFIDLNEEFRHMTLQVIGETVLSLTPEETDRIFPTLYLPIVHECNRLVWEPWRSLLPFSEGARQRRSCLKKLNRVICNIIRER 291          
BLAST of mRNA_M-pyrifera_M_contig127780.5600.1 vs. uniprot
Match: A0A1X0NLV1_9TRYP (Cytochrome P450 n=1 Tax=Trypanosoma theileri TaxID=67003 RepID=A0A1X0NLV1_9TRYP)

HSP 1 Score: 78.6 bits (192), Expect = 3.970e-14
Identity = 47/149 (31.54%), Postives = 84/149 (56.38%), Query Frame = 1
Query:    7 SYTFFKPILGDGLVTSEGEKWRVHRNMLMPHLMHYERLQGLLPVFQEAANTLVDDLSASASSTGKPVRLELDRTFRKVTLDVIAAVTVGMDSSKASGL-PPLFSAIIDELNERLFQPWRQYLPLERDHRKR---LETLDNMVLEMIHER 441
            SY  F  +LG+GLVT+EGEKWR  R +L+ H +  + L+ +  +  +A   + + LSA      K   ++++  FR +TL VI    + +   +   + P L+  I+ E N ++++PWR ++P     R+R   L+ L++++ EMI +R
Sbjct:  155 SYKQFMCLLGNGLVTAEGEKWRKGR-LLLSHALRIDILEEIPEMAMKAVGRIAEKLSAINE---KMPFVDMNEEFRHMTLQVIGETALSLTPEETDRIFPTLYLPIVHECNRQVWEPWRAFMPFSEGSRQRRYCLKQLNSILCEMIQKR 299          
BLAST of mRNA_M-pyrifera_M_contig127780.5600.1 vs. uniprot
Match: A0A422N4L6_TRYRA (Cytochrome p450-like protein n=2 Tax=Trypanosoma rangeli TaxID=5698 RepID=A0A422N4L6_TRYRA)

HSP 1 Score: 78.2 bits (191), Expect = 5.410e-14
Identity = 51/149 (34.23%), Postives = 82/149 (55.03%), Query Frame = 1
Query:    7 SYTFFKPILGDGLVTSEGEKWRVHRNMLMPHLMHYERLQGLLPVFQEAANTLVDDLSASASSTGKPVRLELDRTFRKVTLDVIAAVTVGMDSSKASGL-PPLFSAIIDELNERLFQPWRQYLPLERDHRKRLETLD--NMVLEMIHERR 444
            SY  F  +LG GLVTSEGEKW+  R +L+ H M  + L+ +  +   AA  ++D L+A  + T     L+L+  FR +TL VI    + ++  +   + P L+  I+ E N R+++PWR  +P    +++R   L   N VL  I ++R
Sbjct:  155 SYKHFICLLGKGLVTSEGEKWKKGR-LLLSHAMRIDILEEVPQLAMRAAGRIMDKLAALDAKTSF---LDLNEEFRHMTLQVIGETALSLEPEEIDRIFPALYLPIVHECNRRVWEPWRTLMPFLEGYQERRRCLRELNAVLGDIIQKR 299          
BLAST of mRNA_M-pyrifera_M_contig127780.5600.1 vs. uniprot
Match: A0A422NLB1_9TRYP (Cytochrome p450-like protein n=1 Tax=Trypanosoma conorhini TaxID=83891 RepID=A0A422NLB1_9TRYP)

HSP 1 Score: 78.2 bits (191), Expect = 5.410e-14
Identity = 50/149 (33.56%), Postives = 90/149 (60.40%), Query Frame = 1
Query:    7 SYTFFKPILGDGLVTSEGEKWRVHRNMLMPHLMHYERLQGLLPVFQEAANTLVDDLSASASSTGKPVRLELDRTFRKVTLDVIAAVTVGMDSSKASGL-PPLFSAIIDELNERLFQPWRQYLP-LE--RDHRKRLETLDNMVLEMIHER 441
            SY  F  +LG GLVT+EGEKW+  R +L+ H M  + L+ +  +   AA  +++ L+A  + T  P  L+L+  FR +TL VI    + ++  +   + P L+  I+ E N R+++PWR ++P LE  ++ R+ L+ L++++ ++I +R
Sbjct:  155 SYKHFMCLLGTGLVTAEGEKWKKGR-LLLSHAMRIDILEEVPQLAMRAAGRVMEKLAALDTKT--PF-LDLNEEFRHMTLQVIGETALSLEPEEIDRIFPALYLPIVHECNRRVWEPWRTFMPFLEGFQERRRCLKELNDVLGDIIQKR 299          
BLAST of mRNA_M-pyrifera_M_contig127780.5600.1 vs. uniprot
Match: A0A0S4IUA7_BODSA (Cytochrome p450-like protein, putative n=1 Tax=Bodo saltans TaxID=75058 RepID=A0A0S4IUA7_BODSA)

HSP 1 Score: 77.8 bits (190), Expect = 6.580e-14
Identity = 47/149 (31.54%), Postives = 80/149 (53.69%), Query Frame = 1
Query:    7 SYTFFKPILGDGLVTSEGEKWRVHRNMLMPHLMHYERLQGLLPVFQEAANTLVDDLSASASSTGKPVRLELDRTFRKVTLDVIAAVTVGMDSSKASGL-PPLFSAIIDELNERLFQPWRQYLPLERDHRKR---LETLDNMVLEMIHER 441
            SY  F  +LG GLVTSEG+KW+  R +L+ H +  + L  +  +   A + ++  L+ + S       ++L+  FR +TL VI    +     +   + P L+  I+ E N R+++PWRQ+LP     R+R   L+ L+ ++ + I ER
Sbjct:   48 SYKHFMCLLGSGLVTSEGDKWKKGR-LLLSHALRIDILDEIPTITHSAISKIIAKLNKNES-------VDLNEEFRHMTLQVIGEAALSFTPEQTDAIFPSLYLPIVHECNRRVWEPWRQFLPFLNGSRERSTCLKRLNEVLCKTIRER 188          
BLAST of mRNA_M-pyrifera_M_contig127780.5600.1 vs. uniprot
Match: A0A7S1I6B7_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1I6B7_9EUGL)

HSP 1 Score: 77.8 bits (190), Expect = 7.060e-14
Identity = 48/151 (31.79%), Postives = 84/151 (55.63%), Query Frame = 1
Query:    1 NWSYTFFKPILGDGLVTSEGEKWRVHRNMLMPHLMHYERLQGLLPVFQEAANTLVDDLSASASSTGKPVRLELDRTFRKVTLDVIAAVTVGMDSSKASGL-PPLFSAIIDELNERLFQPWRQYLPLERD--HRKRLETLDNMVLEMIHERR 444
            +++Y  F P+LG GLVTSEGE W+  R +++  +   E L  ++ + + A + L   L      TG P+ +E+   FR +TL VI    + M   +A  + P L+  I++E N R+ QPWR++LP   +    +R++ L+  ++ ++  RR
Sbjct:  110 DFAYGPFLPLLGSGLVTSEGELWKKQR-LMVSCVFRVEILDEIVGMAKRAVDRLCTTLD-QYKGTGNPIDIEVH--FRNLTLQVIGEALLSMSHEEADRVFPELYLPIMEEANRRVLQPWRKFLPTPTNWAFERRVKELNKYIIGLLRARR 256          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127780.5600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812XQS4_9DINO2.500e-3143.24Cyp4e1 protein (Fragment) n=1 Tax=Symbiodinium sp.... [more]
A0A813D1F4_9DINO2.300e-2943.33CYP4C1 protein n=5 Tax=Sar TaxID=2698737 RepID=A0A... [more]
A0A7S1KYZ0_NEODS1.720e-1536.59Hypothetical protein (Fragment) n=2 Tax=Neobodo de... [more]
A0A059LQZ8_9CHLO4.850e-1533.99Uncharacterized protein (Fragment) n=1 Tax=Helicos... [more]
G0TS86_TRYVY2.920e-1432.21Putative cytochrome P450 n=1 Tax=Trypanosoma vivax... [more]
A0A1X0NLV1_9TRYP3.970e-1431.54Cytochrome P450 n=1 Tax=Trypanosoma theileri TaxID... [more]
A0A422N4L6_TRYRA5.410e-1434.23Cytochrome p450-like protein n=2 Tax=Trypanosoma r... [more]
A0A422NLB1_9TRYP5.410e-1433.56Cytochrome p450-like protein n=1 Tax=Trypanosoma c... [more]
A0A0S4IUA7_BODSA6.580e-1431.54Cytochrome p450-like protein, putative n=1 Tax=Bod... [more]
A0A7S1I6B7_9EUGL7.060e-1431.79Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127780contigM-pyrifera_M_contig127780:34..483 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score90.1
Seed ortholog evalue9.4e-16
Seed eggNOG ortholog70448.A0A090MEN4
KEGG koko:K20660
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Cytochrome P450
EggNOG OGs34GV8@3041,37MXW@33090,COG2124@1,KOG0157@2759
COG Functional cat.IQ
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00199
Exons1
Model size450
Cds size450
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815792.1805902-CDS-M-pyrifera_M_contig127780:33..4831622815792.1805902-CDS-M-pyrifera_M_contig127780:33..483Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127780 34..483 -
1692277571.7087963-CDS-M-pyrifera_M_contig127780:33..4831692277571.7087963-CDS-M-pyrifera_M_contig127780:33..483Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127780 34..483 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127780.5600.1prot_M-pyrifera_M_contig127780.5600.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127780 34..483 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127780.5600.1

>prot_M-pyrifera_M_contig127780.5600.1 ID=prot_M-pyrifera_M_contig127780.5600.1|Name=mRNA_M-pyrifera_M_contig127780.5600.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=150bp
NWSYTFFKPILGDGLVTSEGEKWRVHRNMLMPHLMHYERLQGLLPVFQEA
ANTLVDDLSASASSTGKPVRLELDRTFRKVTLDVIAAVTVGMDSSKASGL
PPLFSAIIDELNERLFQPWRQYLPLERDHRKRLETLDNMVLEMIHERRKQ
back to top

mRNA from alignment at M-pyrifera_M_contig127780:34..483-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127780.5600.1 ID=mRNA_M-pyrifera_M_contig127780.5600.1|Name=mRNA_M-pyrifera_M_contig127780.5600.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig127780:34..483- (Macrocystis pyrifera P11B4 male)
AACTGGTCGTATACTTTCTTCAAACCCATCCTTGGAGATGGTTTAGTGAC CAGCGAAGGAGAAAAGTGGCGCGTGCATCGCAACATGCTGATGCCACACT TGATGCACTATGAACGTCTTCAAGGTTTACTCCCTGTCTTCCAAGAAGCA GCAAACACTTTGGTGGATGACCTTTCTGCGTCTGCATCGTCCACAGGAAA ACCTGTGCGATTGGAGTTAGATCGCACGTTTCGCAAAGTTACTTTGGATG TGATTGCAGCTGTCACAGTTGGCATGGATTCAAGCAAAGCGTCCGGCTTG CCACCTCTCTTTTCTGCAATCATTGATGAATTGAACGAGCGACTCTTTCA ACCATGGCGGCAATACCTTCCATTGGAACGTGACCATCGCAAGAGGTTGG AAACGTTGGACAATATGGTGTTGGAAATGATCCATGAACGCCGGAAGCAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig127780:34..483-

>mRNA_M-pyrifera_M_contig127780.5600.1 ID=mRNA_M-pyrifera_M_contig127780.5600.1|Name=mRNA_M-pyrifera_M_contig127780.5600.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=900bp|location=Sequence derived from alignment at M-pyrifera_M_contig127780:34..483- (Macrocystis pyrifera P11B4 male)
AACTGGTCGTATACTTTCTTCAAACCCATCCTTGGAGATGGTTTAGTGAC
CAGCGAAGGAGAAAAGTGGCGCGTGCATCGCAACATGCTGATGCCACACT
TGATGCACTATGAACGTCTTCAAGGTTTACTCCCTGTCTTCCAAGAAGCA
GCAAACACTTTGGTGGATGACCTTTCTGCGTCTGCATCGTCCACAGGAAA
ACCTGTGCGATTGGAGTTAGATCGCACGTTTCGCAAAGTTACTTTGGATG
TGATTGCAGCTGTCACAGTTGGCATGGATTCAAGCAAAGCGTCCGGCTTG
CCACCTCTCTTTTCTGCAATCATTGATGAATTGAACGAGCGACTCTTTCA
ACCATGGCGGCAATACCTTCCATTGGAACGTGACCATCGCAAGAGGTTGG
AAACGTTGGACAATATGGTGTTGGAAATGATCCATGAACGCCGGAAGCAG
AACTGGTCGTATACTTTCTTCAAACCCATCCTTGGAGATGGTTTAGTGAC
CAGCGAAGGAGAAAAGTGGCGCGTGCATCGCAACATGCTGATGCCACACT
TGATGCACTATGAACGTCTTCAAGGTTTACTCCCTGTCTTCCAAGAAGCA
GCAAACACTTTGGTGGATGACCTTTCTGCGTCTGCATCGTCCACAGGAAA
ACCTGTGCGATTGGAGTTAGATCGCACGTTTCGCAAAGTTACTTTGGATG
TGATTGCAGCTGTCACAGTTGGCATGGATTCAAGCAAAGCGTCCGGCTTG
CCACCTCTCTTTTCTGCAATCATTGATGAATTGAACGAGCGACTCTTTCA
ACCATGGCGGCAATACCTTCCATTGGAACGTGACCATCGCAAGAGGTTGG
AAACGTTGGACAATATGGTGTTGGAAATGATCCATGAACGCCGGAAGCAG
back to top