mRNA_M-pyrifera_M_contig127772.5597.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127772.5597.1
Unique NamemRNA_M-pyrifera_M_contig127772.5597.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig127772.5597.1 vs. uniprot
Match: A0A661BNT5_9GAMM (Autotransporter domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A661BNT5_9GAMM)

HSP 1 Score: 103 bits (257), Expect = 5.000e-24
Identity = 60/169 (35.50%), Postives = 87/169 (51.48%), Query Frame = 1
Query:    1 RFVLGFAFGYKDSDADIDRNGGDLESDSYSYFAYWSLYPNENWYIDAMAGYTENDHDQTRNVIYTIGGPGTGLGAATNTISNAAVSSTESEEFSVSVTAGRNYFLDAWTLSPYGRIDYADIEIDGFNERMAQTTALGSGLALQIDDQDFQSLMMMLGASAT----TQWG 495
            +FVLG A GY  +D D+D +GGDL+S+ Y   AY + Y  +N+YID    Y  ND DQ R++ Y     G+         +  A +  +S+  ++ V  G N+   +W L P   ++Y DI ID F E+M+     G+G    IDD D Q L + LG   +    T WG
Sbjct:   11 QFVLGGALGYMKTDTDLDNDGGDLDSNGYIMTAYGTYYDEQNYYIDFSVTYGVNDFDQKRHMSYQFQNQGSA--------NQFAKADYDSDMLTLFVAGGYNFNYGSWMLGPRLSLEYIDINIDDFTEKMSDPNGSGAGWGTNIDDTDQQWLTLKLGGKISYAYSTSWG 171          
BLAST of mRNA_M-pyrifera_M_contig127772.5597.1 vs. uniprot
Match: A0A4P7BUZ2_9GAMM (Autotransporter outer membrane beta-barrel domain-containing protein n=1 Tax=Nitrosococcus wardiae TaxID=1814290 RepID=A0A4P7BUZ2_9GAMM)

HSP 1 Score: 105 bits (263), Expect = 1.010e-23
Identity = 61/168 (36.31%), Postives = 97/168 (57.74%), Query Frame = 1
Query:    4 FVLGFAFGYKDSDADIDRNGGDLESDSYSYFAYWSLYPNENWYIDAMAGYTENDHDQTRNVIYTIGGPGTGLGAATNTISNAAVSSTESEEFSVSVTAGRNYFLDAWTLSPYGRIDYADIEIDGFNERMAQTTALGSGLALQIDDQDFQSLMMMLGA----SATTQWG 495
            F+LG AF Y  +D D DR GG L+SD+YS   Y + Y   ++++D +A Y   D+D TRN+ Y + G         + ++  + SS E  +FS +++AG ++ L+A T+SPY R +Y +++ID F+ER      LG G+  +  DQ  +SL   +G     + +TQWG
Sbjct:  217 FILGLAFNYLRTDTDFDREGGQLDSDTYSGSIYGTFYATNSFHVDWVATYGGIDYDSTRNISYAVPG---------DVVNTQSTSSPEGNQFSAAISAGYDFSLNALTISPYVRGEYINLDIDSFSER----DILGWGV--RYSDQTIESLTTAVGTQIAYAVSTQWG 369          
BLAST of mRNA_M-pyrifera_M_contig127772.5597.1 vs. uniprot
Match: D5BXP8_NITHN (Outer membrane autotransporter barrel domain protein n=2 Tax=Nitrosococcus halophilus TaxID=133539 RepID=D5BXP8_NITHN)

HSP 1 Score: 103 bits (256), Expect = 1.070e-22
Identity = 55/156 (35.26%), Postives = 96/156 (61.54%), Query Frame = 1
Query:    4 FVLGFAFGYKDSDADIDRNGGDLESDSYSYFAYWSLYPNENWYIDAMAGYTENDHDQTRNVIYTIGGPGTGLGAATNTISNAAVSSTESEEFSVSVTAGRNYFLDAWTLSPYGRIDYADIEIDGFNERMAQTTALGSGLALQIDDQDFQSLMMMLG 471
            F+LG AF Y ++D D DR GG+L+SDSYS   Y + Y   ++++D +A Y E ++D  RN+ Y + G         + ++  + SS + ++FS +++AG ++ L+A T+SPY R +Y ++E++ FNE+      LG G+  +  DQD +S+  ++G
Sbjct:  233 FILGLAFNYLNTDTDFDREGGELDSDSYSGSIYGTFYATNSFHLDWVATYGEINYDSIRNISYAVPG---------DVVNTQSTSSPDGDQFSAAISAGYDFSLNALTISPYVRGEYINLEVNSFNEQ----DPLGWGV--RYSDQDIESVTTVVG 373          
BLAST of mRNA_M-pyrifera_M_contig127772.5597.1 vs. uniprot
Match: A0A176S2B8_9GAMM (Outer membrane autotransporter barrel domain protein (Fragment) n=1 Tax=Candidatus Thiomargarita nelsonii TaxID=1003181 RepID=A0A176S2B8_9GAMM)

HSP 1 Score: 89.0 bits (219), Expect = 3.750e-18
Identity = 54/149 (36.24%), Postives = 82/149 (55.03%), Query Frame = 1
Query:    1 RFVLGFAFGYKDSDADIDR----NGGDLESDSYSYFAYWSLYPNENWYIDAMAGYTENDHDQTRNVIYTIGGPGTGLGAATNTISNAAVSSTESEEFSVSVTAGRNYFLDAWTLSPYGRIDYADIEIDGFNERMAQTTALGSGLALQID 435
            +FVLG A GY    +DI      +GG +++D YS   Y  LY  +N+Y++ +  YT ND+D  R V+     P      +  TI+  A ++T+S++ + S TAG     +AWT  PY R+DY D++IDG+ E  A       GL LQ++
Sbjct:  170 QFVLGVAAGYNKLGSDIVHTASVSGGSVDADGYSLSGY-GLYYLDNFYVNGVITYTSNDYDIERRVVILSNNP------SIPTINRTASANTDSDQIAFSATAGYELSREAWTFGPYARLDYLDVDIDGYTETGA------GGLNLQVN 305          
BLAST of mRNA_M-pyrifera_M_contig127772.5597.1 vs. uniprot
Match: A0A2U0AJE8_9GAMM (Autotransporter domain-containing protein (Fragment) n=1 Tax=gamma proteobacterium symbiont of Ctena orbiculata TaxID=1968598 RepID=A0A2U0AJE8_9GAMM)

HSP 1 Score: 87.8 bits (216), Expect = 2.070e-17
Identity = 46/169 (27.22%), Postives = 88/169 (52.07%), Query Frame = 1
Query:    1 RFVLGFAFGYKDSDADIDRNGGDLESDSYSYFAYWSLYPNENWYIDAMAGYTENDHDQTRNVIYTIGGPGTGLGAATNTISNAAVSSTESEEFSVSVTAGRNYFLDAWTLSPYGRIDYADIEIDGFNERMAQTTALGSGLALQIDDQDFQSLMMMLGASAT----TQWG 495
            +F+LG A G+ D++A+++ + GDL++   S   + + Y  +N+++D  A    ND DQ R+++YT+ G           +S    +  + +  S+ V +G +++   W+  P   ++Y   ++DGF E ++  TA G G A ++D  D + L + LG   +      WG
Sbjct:  127 QFILGGAIGFSDTEAELENDAGDLDTQGVSLSLFGTYYSPQNYFVDFSATVGANDFDQKRSIVYTLDGLAD--------VSQNLKADYDGDTISLFVGSGYDFYRGPWSFGPRADLEYIKSDVDGFTEEVSDPTADGGGWATRVDGTDQRWLTLNLGGKVSYTHSADWG 287          
BLAST of mRNA_M-pyrifera_M_contig127772.5597.1 vs. uniprot
Match: A0A7Z0VL19_9GAMM (Esterase EstA n=2 Tax=Candidatus Thiodiazotropha endolucinida TaxID=1655433 RepID=A0A7Z0VL19_9GAMM)

HSP 1 Score: 88.6 bits (218), Expect = 2.300e-17
Identity = 46/169 (27.22%), Postives = 91/169 (53.85%), Query Frame = 1
Query:    1 RFVLGFAFGYKDSDADIDRNGGDLESDSYSYFAYWSLYPNENWYIDAMAGYTENDHDQTRNVIYTIGGPGTGLGAATNTISNAAVSSTESEEFSVSVTAGRNYFLDAWTLSPYGRIDYADIEIDGFNERMAQTTALGSGLALQIDDQDFQSLMMMLGASAT----TQWG 495
            +F+LG A G+ D++A+++ + G+L++   S   + + Y  +N+++D  A   +ND DQ R+++YT+GG           +S    +  + +  S+ + +G ++   AW+  P   ++Y   ++DGF E ++  TA G G A +++D D + L + LG   +      WG
Sbjct:  645 QFILGGAVGFIDTEAELENDAGELDTQGISLSLFGTYYSPQNYFVDFSATVGKNDFDQKRSIVYTLGGLAD--------VSQELKADYDGDTVSLFIGSGYDFNRGAWSFGPRADLEYIKSDVDGFTEEVSDPTADGGGWATRVEDTDQRWLTLNLGGKVSYTHSADWG 805          
BLAST of mRNA_M-pyrifera_M_contig127772.5597.1 vs. uniprot
Match: UPI001BBA425A (Autotransporter outer membrane beta-barrel domain-containing protein n=1 Tax=Methylomonas sp. TaxID=418 RepID=UPI001BBA425A)

HSP 1 Score: 88.2 bits (217), Expect = 2.330e-17
Identity = 51/167 (30.54%), Postives = 83/167 (49.70%), Query Frame = 1
Query:    7 VLGFAFGYKDSDADIDRNGGDLESDSYSYFAYWSLYPNENWYIDAMAGYTENDHDQTRNVIYTIGGPGTGLGAATNTISNAAVSSTESEEFSVSVTAGRNYFLDAWTLSPYGRIDYADIEIDGFNERMAQTTALGSGLALQIDDQDFQSLMMMLGASAT----TQWG 495
            VLG AF Y  S++  DRNGG L+S++Y+   Y + Y  +N Y D +A     ++   R++ Y++          T T++  A  +    ++SV    G NY L  W  +PY +++Y  +++DGF+E        GSG  +   DQ  +S+   LG   +    T WG
Sbjct:  215 VLGTAFTYMRSESSFDRNGGSLDSNTYTGAFYGTYYATDNLYFDGIASVGGVNYASARHIQYSV---------PTETVNTLAKGTPGGNQYSVGFGGGYNYALQQWLFNPYAKVNYLKLDVDGFSETG------GSGWGMSYSDQTVESVTTTLGTQVSYAMSTPWG 366          
BLAST of mRNA_M-pyrifera_M_contig127772.5597.1 vs. uniprot
Match: UPI0009E8B9DE (autotransporter outer membrane beta-barrel domain-containing protein n=1 Tax=Thiohalocapsa sp. ML1 TaxID=1431688 RepID=UPI0009E8B9DE)

HSP 1 Score: 88.2 bits (217), Expect = 2.940e-17
Identity = 54/159 (33.96%), Postives = 86/159 (54.09%), Query Frame = 1
Query:    7 VLGFAFGYKDSDADIDRNGGDLESDSYSYFAYWSLYPNENWYIDAMAGYTENDHDQTRNVIYTIGGPGTGLGAATNTISNAAVSSTESEEFSVSVTAGRNYFLDAWTLSPYGRIDYADIEIDGFNERMAQTTALGSGLALQIDDQDFQSLMMMLGASAT 483
            V+GFA GY  SD DID NGGDL++ ++S   Y + Y  +N Y++  A +    +DQ RN+ Y+I      LG         A +  +  ++++ + AG +    A  +  YGR++Y ++++DG+ ER A+      GL L I+DQ   S   +LGA  T
Sbjct:  381 VVGFALGYGSSDVDIDANGGDLDATAWSATLYSTYYATDNLYLEGSASWGWGSYDQNRNIDYSI------LGGTRE-----AKADFDGNQYALMLGAGYDITRGANIVDFYGRLNYVNVDLDGYRERGAE------GLDLVIEDQTSTSFSSVLGAQYT 522          
BLAST of mRNA_M-pyrifera_M_contig127772.5597.1 vs. uniprot
Match: A0A7V5R0M1_9GAMM (Autotransporter domain-containing protein n=1 Tax=Oceanospirillales bacterium TaxID=1914300 RepID=A0A7V5R0M1_9GAMM)

HSP 1 Score: 85.1 bits (209), Expect = 3.670e-16
Identity = 52/159 (32.70%), Postives = 80/159 (50.31%), Query Frame = 1
Query:    7 VLGFAFGYKDSDADIDRNGGDLESDSYSYFAYWSLYPNENWYIDAMAGYTENDHDQTRNVIYTIGGPGTGLGAATNTISNAAVSSTESEEFSVSVTAGRNYFLDAWTLSPYGRIDYADIEIDGFNERMAQTTALGSGLALQIDDQDFQSLMMMLGASAT 483
            V+G A GY + D+ ID++  +L S S +   Y S Y N+N+YIDA    +    DQ RN+ + + G           I   AV ST + ++SV+++AG N++ +AW ++P    +Y    IDGF E  A       G      DQD +SL+   G   +
Sbjct:  610 VIGLAVGYANFDSKIDKSA-ELNSTSLTLTGYGSFYVNDNFYIDARISLSRPKFDQKRNINFNLRGID---------IQRTAVGSTTANQYSVAMSAGYNFYRNAWNITPNASFNYVKTNIDGFEETGA------GGFNFTYSDQDLESLVWSAGVKVS 752          
BLAST of mRNA_M-pyrifera_M_contig127772.5597.1 vs. uniprot
Match: A0A2V6PST8_9BACT (Autotransporter domain-containing protein n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V6PST8_9BACT)

HSP 1 Score: 83.2 bits (204), Expect = 1.650e-15
Identity = 52/157 (33.12%), Postives = 79/157 (50.32%), Query Frame = 1
Query:    7 VLGFAFGYKDSDADIDRNGGDLESDSYSYFAYWSLYPNENWYIDAMAGYTENDHDQTRNVIYTIGGPGTGLGAATNTISNAAVSSTESEEFSVSVTAGRNYFLDAWTLSPYGRIDYADIEIDGFNERMAQTTALGSGLALQIDDQDFQSLMMMLGAS 477
            VLG AF Y  + AD     GD ++ SY    Y + Y    +Y DA  G+  N  D TR ++Y        L AA +++   A   TE  +++  + AG ++     T++PYGR++Y  ++IDG+ ER A+      GL L +  QD  S    LGA+
Sbjct:  419 VLGVAFNYSKTSADFHGALGDTDTRSYGGLLYGTYYRGA-FYADAHTGFNWNKFDVTRRIVYES------LSAAASSVDRTAKGDTEGPQYTAGLGAGYDFRAGPVTITPYGRVEYIHLDIDGYTERGAE------GLNLTVRKQDVDSFQSALGAT 562          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127772.5597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A661BNT5_9GAMM5.000e-2435.50Autotransporter domain-containing protein n=1 Tax=... [more]
A0A4P7BUZ2_9GAMM1.010e-2336.31Autotransporter outer membrane beta-barrel domain-... [more]
D5BXP8_NITHN1.070e-2235.26Outer membrane autotransporter barrel domain prote... [more]
A0A176S2B8_9GAMM3.750e-1836.24Outer membrane autotransporter barrel domain prote... [more]
A0A2U0AJE8_9GAMM2.070e-1727.22Autotransporter domain-containing protein (Fragmen... [more]
A0A7Z0VL19_9GAMM2.300e-1727.22Esterase EstA n=2 Tax=Candidatus Thiodiazotropha e... [more]
UPI001BBA425A2.330e-1730.54Autotransporter outer membrane beta-barrel domain-... [more]
UPI0009E8B9DE2.940e-1733.96autotransporter outer membrane beta-barrel domain-... [more]
A0A7V5R0M1_9GAMM3.670e-1632.70Autotransporter domain-containing protein n=1 Tax=... [more]
A0A2V6PST8_9BACT1.650e-1533.12Autotransporter domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127772contigM-pyrifera_M_contig127772:5..502 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score103.6
Seed ortholog evalue9.1e-20
Seed eggNOG ortholog472759.Nhal_0830
Preferred nameestA
KEGG koko:K12686
KEGG TC1.B.12.8
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0016289,GO:0016290,GO:0016787,GO:0016788,GO:0016790,GO:0047617,GO:0052689
EggNOG free text desc.TIGRFAM outer membrane autotransporter barrel
EggNOG OGs1RDX6@1224,1S53I@1236,1WYNW@135613,COG4625@1,COG4625@2
COG Functional cat.S
Best tax levelChromatiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000,ko02044
Exons1
Model size498
Cds size498
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815792.0533502-CDS-M-pyrifera_M_contig127772:4..5021622815792.0533502-CDS-M-pyrifera_M_contig127772:4..502Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127772 5..502 -
1692277571.6639237-CDS-M-pyrifera_M_contig127772:4..5021692277571.6639237-CDS-M-pyrifera_M_contig127772:4..502Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127772 5..502 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127772.5597.1prot_M-pyrifera_M_contig127772.5597.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127772 5..502 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127772.5597.1

>prot_M-pyrifera_M_contig127772.5597.1 ID=prot_M-pyrifera_M_contig127772.5597.1|Name=mRNA_M-pyrifera_M_contig127772.5597.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=166bp
RFVLGFAFGYKDSDADIDRNGGDLESDSYSYFAYWSLYPNENWYIDAMAG
YTENDHDQTRNVIYTIGGPGTGLGAATNTISNAAVSSTESEEFSVSVTAG
RNYFLDAWTLSPYGRIDYADIEIDGFNERMAQTTALGSGLALQIDDQDFQ
SLMMMLGASATTQWGE
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mRNA from alignment at M-pyrifera_M_contig127772:5..502-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127772.5597.1 ID=mRNA_M-pyrifera_M_contig127772.5597.1|Name=mRNA_M-pyrifera_M_contig127772.5597.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=498bp|location=Sequence derived from alignment at M-pyrifera_M_contig127772:5..502- (Macrocystis pyrifera P11B4 male)
CGCTTCGTGCTCGGCTTTGCGTTCGGCTACAAGGATTCCGATGCCGATAT AGACAGGAACGGCGGCGATCTCGAGTCCGATTCATACAGCTATTTCGCCT ATTGGTCGCTGTACCCGAACGAAAACTGGTATATCGACGCGATGGCCGGT TATACCGAAAACGACCATGATCAAACGCGTAACGTGATCTACACGATCGG TGGCCCGGGCACCGGCCTCGGCGCGGCTACGAATACGATCTCGAATGCCG CGGTGTCCAGCACCGAAAGCGAGGAATTCTCGGTCAGCGTAACCGCGGGG CGCAATTACTTCCTCGATGCGTGGACACTGAGCCCGTATGGCCGGATTGA CTACGCGGATATTGAAATCGATGGCTTCAACGAGCGGATGGCGCAAACGA CGGCACTCGGCTCCGGTCTTGCGCTGCAAATCGACGATCAGGACTTCCAG TCACTCATGATGATGCTCGGTGCGAGCGCGACAACACAATGGGGAGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127772:5..502-

>mRNA_M-pyrifera_M_contig127772.5597.1 ID=mRNA_M-pyrifera_M_contig127772.5597.1|Name=mRNA_M-pyrifera_M_contig127772.5597.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=996bp|location=Sequence derived from alignment at M-pyrifera_M_contig127772:5..502- (Macrocystis pyrifera P11B4 male)
CGCTTCGTGCTCGGCTTTGCGTTCGGCTACAAGGATTCCGATGCCGATAT
AGACAGGAACGGCGGCGATCTCGAGTCCGATTCATACAGCTATTTCGCCT
ATTGGTCGCTGTACCCGAACGAAAACTGGTATATCGACGCGATGGCCGGT
TATACCGAAAACGACCATGATCAAACGCGTAACGTGATCTACACGATCGG
TGGCCCGGGCACCGGCCTCGGCGCGGCTACGAATACGATCTCGAATGCCG
CGGTGTCCAGCACCGAAAGCGAGGAATTCTCGGTCAGCGTAACCGCGGGG
CGCAATTACTTCCTCGATGCGTGGACACTGAGCCCGTATGGCCGGATTGA
CTACGCGGATATTGAAATCGATGGCTTCAACGAGCGGATGGCGCAAACGA
CGGCACTCGGCTCCGGTCTTGCGCTGCAAATCGACGATCAGGACTTCCAG
TCACTCATGATGATGCTCGGTGCGAGCGCGACAACACAATGGGGAGAACG
CTTCGTGCTCGGCTTTGCGTTCGGCTACAAGGATTCCGATGCCGATATAG
ACAGGAACGGCGGCGATCTCGAGTCCGATTCATACAGCTATTTCGCCTAT
TGGTCGCTGTACCCGAACGAAAACTGGTATATCGACGCGATGGCCGGTTA
TACCGAAAACGACCATGATCAAACGCGTAACGTGATCTACACGATCGGTG
GCCCGGGCACCGGCCTCGGCGCGGCTACGAATACGATCTCGAATGCCGCG
GTGTCCAGCACCGAAAGCGAGGAATTCTCGGTCAGCGTAACCGCGGGGCG
CAATTACTTCCTCGATGCGTGGACACTGAGCCCGTATGGCCGGATTGACT
ACGCGGATATTGAAATCGATGGCTTCAACGAGCGGATGGCGCAAACGACG
GCACTCGGCTCCGGTCTTGCGCTGCAAATCGACGATCAGGACTTCCAGTC
ACTCATGATGATGCTCGGTGCGAGCGCGACAACACAATGGGGAGAA
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