mRNA_M-pyrifera_M_contig127759.5595.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127759.5595.1
Unique NamemRNA_M-pyrifera_M_contig127759.5595.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig127759.5595.1 vs. uniprot
Match: A0A836C148_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836C148_9CHLO)

HSP 1 Score: 58.2 bits (139), Expect = 1.910e-7
Identity = 37/100 (37.00%), Postives = 52/100 (52.00%), Query Frame = 1 
Query:    1 GETVMHAAVRRGDVASVRLLAAAGVNALQMNVEGRTPLHVAVQNGQVEALKALLELCPPQVLGPWVWAPLLHDAVEANQAKSTRVLVRAGAPPDEPDDAG 300
            G + +H AV+ GD+ S+  L  +G     MN    TPL +A+  GQ+EA++AL      ++         LH A  A  AKS   L+R GAPPD  D+ G
Sbjct: 1053 GSSPLHDAVQAGDLPSITKLLQSGAGLEAMNASAETPLVLAMNLGQLEAVRALAAAGASRLYR-------LHWAAAAGHAKSVAELLRQGAPPDLADEYG 1145
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BLAST of mRNA_M-pyrifera_M_contig127759.5595.1 vs. uniprot
Match: A0A1F3SPV1_9PROT (Uncharacterized protein n=1 Tax=Bdellovibrionales bacterium GWA2_49_15 TaxID=1797384 RepID=A0A1F3SPV1_9PROT)

HSP 1 Score: 57.0 bits (136), Expect = 4.420e-7
Identity = 40/109 (36.70%), Postives = 53/109 (48.62%), Query Frame = 1 
Query:    1 GETVMHAAVRRGDVASVRLLAAAGVNALQMNVEGRTPLHVAVQNGQVEALKALLELCPPQVLGPWVWAPLLHDAVEANQAKSTRVLVRAGAPPDEPDDAGWRAAALAYF 327
            GET + AA R      +  L A G NA   N E   PL +AVQNGQVEA +AL+   P      +     LH AV  N+ +  R+L+   AP D+ D  G  A    ++
Sbjct:  458 GETALFAAARSNFGPGIEKLLARGANAGISNHENYNPLMMAVQNGQVEAARALVSQSPLTAADNF-GRSALHVAVYLNKPELVRILIAECAPTDQKDRHGDSAYDYLFY 565
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127759.5595.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836C148_9CHLO1.910e-737.00Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A1F3SPV1_9PROT4.420e-736.70Uncharacterized protein n=1 Tax=Bdellovibrionales ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127759contigM-pyrifera_M_contig127759:15..440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size345
Cds size333
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127759.5595.1prot_M-pyrifera_M_contig127759.5595.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127759 15..428 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815791.92359-CDS-M-pyrifera_M_contig127759:14..1701622815791.92359-CDS-M-pyrifera_M_contig127759:14..170Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127759 15..170 -
1692277571.623107-CDS-M-pyrifera_M_contig127759:14..1701692277571.623107-CDS-M-pyrifera_M_contig127759:14..170Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127759 15..170 -
1622815791.941711-CDS-M-pyrifera_M_contig127759:251..4281622815791.941711-CDS-M-pyrifera_M_contig127759:251..428Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127759 252..428 -
1692277571.6321461-CDS-M-pyrifera_M_contig127759:251..4281692277571.6321461-CDS-M-pyrifera_M_contig127759:251..428Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127759 252..428 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815791.956838-UTR-M-pyrifera_M_contig127759:428..4401622815791.956838-UTR-M-pyrifera_M_contig127759:428..440Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig127759 429..440 -
1692277571.6414115-UTR-M-pyrifera_M_contig127759:428..4401692277571.6414115-UTR-M-pyrifera_M_contig127759:428..440Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig127759 429..440 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127759.5595.1

>prot_M-pyrifera_M_contig127759.5595.1 ID=prot_M-pyrifera_M_contig127759.5595.1|Name=mRNA_M-pyrifera_M_contig127759.5595.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=111bp
MHAAVRRGDVASVRLLAAAGVNALQMNVEGRTPLHVAVQNGQVEALKALL
ELCPPQVLGPWVWAPLLHDAVEANQAKSTRVLVRAGAPPDEPDDAGWRAA
ALAYFHGHGEC
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mRNA from alignment at M-pyrifera_M_contig127759:15..440-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127759.5595.1 ID=mRNA_M-pyrifera_M_contig127759.5595.1|Name=mRNA_M-pyrifera_M_contig127759.5595.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=426bp|location=Sequence derived from alignment at M-pyrifera_M_contig127759:15..440- (Macrocystis pyrifera P11B4 male)
GGAGAAACAGTGATGCATGCTGCCGTGCGTAGAGGAGATGTGGCAAGTGT
GAGGTTGTTAGCTGCTGCTGGAGTAAATGCACTGCAAATGAACGTGGAAG
GGAGAACTCCACTGCATGTTGCAGTTCAAAATGGACAAGTGGAAGCCTTG
AAAGCGTTGCTTGAACTTTGTCCTCCACAAGTTCTCGGAGTACAAGGAGA
ACCTCTCATTACCTTGCCACCGTTGCCTGCACCACTGTCGAGGTTGTGGC
AATGGCCAAAAGACTATGAGCCATGGGTGTGGGCTCCACTGCTCCATGAT
GCTGTGGAGGCCAACCAAGCAAAATCTACCCGTGTCCTTGTTCGTGCTGG
TGCTCCACCAGATGAGCCAGATGATGCTGGCTGGCGTGCTGCTGCACTGG
CTTATTTTCATGGACATGGTGAATGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127759:15..440-

>mRNA_M-pyrifera_M_contig127759.5595.1 ID=mRNA_M-pyrifera_M_contig127759.5595.1|Name=mRNA_M-pyrifera_M_contig127759.5595.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=666bp|location=Sequence derived from alignment at M-pyrifera_M_contig127759:15..440- (Macrocystis pyrifera P11B4 male)
ATGCATGCTGCCGTGCGTAGAGGAGATGTGGCAAGTGTGAGGTTGTTAGC
TGCTGCTGGAGTAAATGCACTGCAAATGAACGTGGAAGGGAGAACTCCAC
TGCATGTTGCAGTTCAAAATGGACAAGTGGAAGCCTTGAAAGCGTTGCTT
GAACTTTGTCCTCCACAAGTTCTCGGAATGCATGCTGCCGTGCGTAGAGG
AGATGTGGCAAGTGTGAGGTTGTTAGCTGCTGCTGGAGTAAATGCACTGC
AAATGAACGTGGAAGGGAGAACTCCACTGCATGTTGCAGTTCAAAATGGA
CAAGTGGAAGCCTTGAAAGCGTTGCTTGAACTTTGTCCTCCACAAGTTCT
CGGACCATGGGTGTGGGCTCCACTGCTCCATGATGCTGTGGAGGCCAACC
AAGCAAAATCTACCCGTGTCCTTGTTCGTGCTGGTGCTCCACCAGATGAG
CCAGATGATGCTGGCTGGCGTGCTGCTGCACTGGCTTATTTTCATGGACA
TGGTGAATGTCCATGGGTGTGGGCTCCACTGCTCCATGATGCTGTGGAGG
CCAACCAAGCAAAATCTACCCGTGTCCTTGTTCGTGCTGGTGCTCCACCA
GATGAGCCAGATGATGCTGGCTGGCGTGCTGCTGCACTGGCTTATTTTCA
TGGACATGGTGAATGT
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