mRNA_M-pyrifera_M_contig127756.5593.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127756.5593.1
Unique NamemRNA_M-pyrifera_M_contig127756.5593.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig127756.5593.1 vs. uniprot
Match: A0A2D6HAX6_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D6HAX6_9BACT)

HSP 1 Score: 82.8 bits (203), Expect = 1.240e-15
Identity = 54/168 (32.14%), Postives = 89/168 (52.98%), Query Frame = 1 
Query:    1 KDLSPGRTELAFGDFYLHAARRPAKDTFGEVLIQMPGDDERPDLR-IVADRARFTFTETELAVQFTGARIVSGQDDLVAEYSELRRPLEDIFEEEAYAREAGKYFTLSELRRRLADPEVRAGLSESRIKQYRYELNQRPAFALSFVLFVFFGAPIGLMLRRGTRLAAM 501
            ++LSPG+TE+ FGDFYL A+    ++TF +V +++P  + +   R +VA  ARF FT+  + +       +        EY+    PL D+        E  +Y +     RRL++      L     ++Y Y L++R   A++ +LF+  G P G++LRR T+LAAM
Sbjct:  139 RNLSPGQTEVQFGDFYL-ASNHREENTFHDVFLEVPDPESKGGTRSLVAHSARFEFTDELMTIHLRNVEFMREGGRGRIEYTRTDIPLVDLIPPSRANYEKARYKSS----RRLSEELAAGSLDAVTQRKYTYALHKRVTNAVTCLLFILLGVPTGILLRRSTQLAAM 301
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BLAST of mRNA_M-pyrifera_M_contig127756.5593.1 vs. uniprot
Match: A0A7Y5PZ42_9PLAN (YjgP/YjgQ family permease n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7Y5PZ42_9PLAN)

HSP 1 Score: 76.3 bits (186), Expect = 3.200e-13
Identity = 61/185 (32.97%), Postives = 88/185 (47.57%), Query Frame = 1 
Query:    1 KDLSPGRTELAFGDFYLHAARRPAKDT--FGEVLIQMPGDDERPDLRIVADRARFTFTETELAVQFTGARIVSGQDDLVAEYSELRRPLEDIFEEEAYAREAGKYFTLSELRRRL--------ADPEVR-AGLSESR-------IKQYRYELNQRPAFALSFVLFVFFGAPIGLMLRRGTRLAAM 501
            K L+PGRTEL FGDFYL A  R   D   F +V + +P   E+P   I A   +     + L V+    R    + D     +  +  L++ F  +A  R + ++ T + L  RL         D E   AGLS S        ++   YEL+ R A  L   +F+  G P GL+LRRG++LAA+
Sbjct:  139 KSLNPGRTELRFGDFYLSALERDPDDRNLFRQVFLHLPPSGEKPAQTIFAQAVQIVVDGSILTVEMAEPRWADERFDTRVGRASAQYDLDEYFSTDAKNRASWRFQTSAVLSERLDHTRGLVARDGEAALAGLSHSDGIIPFKDLRAAAYELHSRSALLLVCPMFLLLGLPTGLVLRRGSQLAAL 323
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BLAST of mRNA_M-pyrifera_M_contig127756.5593.1 vs. uniprot
Match: A0A7C8CWX1_9BACT (YjgP/YjgQ family permease n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C8CWX1_9BACT)

HSP 1 Score: 73.9 bits (180), Expect = 1.950e-12
Identity = 55/170 (32.35%), Postives = 82/170 (48.24%), Query Frame = 1 
Query:    1 KDLSPGRTELAFGDFYLHAARRPAK--DTFGEVLIQMPGDDERPDLRIVADRARFTFTETELAVQFTGARIVSGQDDLVAEYSELRRPLEDIF-EEEAYAREAGKYFTLSELRRRLADPEVRAGLSESRIKQYRYELNQRPAFALSFVLFVFFGAPIGLMLRRGTRLAAM 501
            K+LSPGRT+++   FYL +A R  +  +TF +  I+ P  D        A+  RF F E E+     G R   G     AE   L    E +  E +     + +Y T SE+    A         + R   + Y  +QR A A + +LFVF GA  G+++R+GT+LAA+
Sbjct:  139 KNLSPGRTDVSLQGFYLQSAFRDPEQQNTFFDCFIEFPSKDGDDPKSFYAETVRFEFLEAEMVAHMYGVRGTEGVVQAAAEKLALSVNFEQLAGERDKRTFSSSRYKTSSEISAEFAS----MAADDPRRVSFLYAWHQRIANASTCLLFVFIGASTGVLMRKGTQLAAL 304
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127756.5593.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2D6HAX6_9BACT1.240e-1532.14Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A7Y5PZ42_9PLAN3.200e-1332.97YjgP/YjgQ family permease n=1 Tax=Planctomycetacea... [more]
A0A7C8CWX1_9BACT1.950e-1232.35YjgP/YjgQ family permease n=1 Tax=Planctomycetes b... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127756contigM-pyrifera_M_contig127756:1..504 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size504
Cds size504
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815791.833649-CDS-M-pyrifera_M_contig127756:0..5041622815791.833649-CDS-M-pyrifera_M_contig127756:0..504Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127756 1..504 -
1692277571.6061606-CDS-M-pyrifera_M_contig127756:0..5041692277571.6061606-CDS-M-pyrifera_M_contig127756:0..504Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127756 1..504 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127756.5593.1prot_M-pyrifera_M_contig127756.5593.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127756 1..504 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127756.5593.1

>prot_M-pyrifera_M_contig127756.5593.1 ID=prot_M-pyrifera_M_contig127756.5593.1|Name=mRNA_M-pyrifera_M_contig127756.5593.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=168bp
KDLSPGRTELAFGDFYLHAARRPAKDTFGEVLIQMPGDDERPDLRIVADR
ARFTFTETELAVQFTGARIVSGQDDLVAEYSELRRPLEDIFEEEAYAREA
GKYFTLSELRRRLADPEVRAGLSESRIKQYRYELNQRPAFALSFVLFVFF
GAPIGLMLRRGTRLAAMT
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mRNA from alignment at M-pyrifera_M_contig127756:1..504-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127756.5593.1 ID=mRNA_M-pyrifera_M_contig127756.5593.1|Name=mRNA_M-pyrifera_M_contig127756.5593.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig127756:1..504- (Macrocystis pyrifera P11B4 male)
AAGGACCTGAGTCCCGGGCGGACGGAGCTGGCCTTCGGCGACTTCTACCT
GCACGCCGCGCGGCGGCCGGCCAAGGACACCTTTGGCGAGGTCCTGATCC
AGATGCCGGGCGACGACGAGCGGCCGGACCTGCGGATCGTGGCCGACCGC
GCGCGCTTCACGTTCACCGAGACCGAGCTGGCGGTGCAGTTCACGGGCGC
GCGGATCGTGTCGGGCCAGGACGACCTGGTCGCGGAGTACTCGGAGCTGC
GCCGTCCCTTGGAGGACATCTTCGAGGAGGAGGCGTACGCGCGCGAGGCG
GGCAAGTACTTCACGCTGTCCGAGCTGCGCCGGCGCTTGGCCGACCCCGA
GGTGCGCGCCGGGCTGTCCGAGAGCCGCATCAAGCAGTACCGCTACGAGC
TGAACCAGCGGCCGGCGTTCGCGCTGAGCTTCGTGCTGTTCGTGTTCTTC
GGCGCGCCGATCGGGTTGATGCTGCGGCGCGGGACGCGGCTCGCGGCGAT
GACG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127756:1..504-

>mRNA_M-pyrifera_M_contig127756.5593.1 ID=mRNA_M-pyrifera_M_contig127756.5593.1|Name=mRNA_M-pyrifera_M_contig127756.5593.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1008bp|location=Sequence derived from alignment at M-pyrifera_M_contig127756:1..504- (Macrocystis pyrifera P11B4 male)
AAGGACCTGAGTCCCGGGCGGACGGAGCTGGCCTTCGGCGACTTCTACCT
GCACGCCGCGCGGCGGCCGGCCAAGGACACCTTTGGCGAGGTCCTGATCC
AGATGCCGGGCGACGACGAGCGGCCGGACCTGCGGATCGTGGCCGACCGC
GCGCGCTTCACGTTCACCGAGACCGAGCTGGCGGTGCAGTTCACGGGCGC
GCGGATCGTGTCGGGCCAGGACGACCTGGTCGCGGAGTACTCGGAGCTGC
GCCGTCCCTTGGAGGACATCTTCGAGGAGGAGGCGTACGCGCGCGAGGCG
GGCAAGTACTTCACGCTGTCCGAGCTGCGCCGGCGCTTGGCCGACCCCGA
GGTGCGCGCCGGGCTGTCCGAGAGCCGCATCAAGCAGTACCGCTACGAGC
TGAACCAGCGGCCGGCGTTCGCGCTGAGCTTCGTGCTGTTCGTGTTCTTC
GGCGCGCCGATCGGGTTGATGCTGCGGCGCGGGACGCGGCTCGCGGCGAT
GACGAAGGACCTGAGTCCCGGGCGGACGGAGCTGGCCTTCGGCGACTTCT
ACCTGCACGCCGCGCGGCGGCCGGCCAAGGACACCTTTGGCGAGGTCCTG
ATCCAGATGCCGGGCGACGACGAGCGGCCGGACCTGCGGATCGTGGCCGA
CCGCGCGCGCTTCACGTTCACCGAGACCGAGCTGGCGGTGCAGTTCACGG
GCGCGCGGATCGTGTCGGGCCAGGACGACCTGGTCGCGGAGTACTCGGAG
CTGCGCCGTCCCTTGGAGGACATCTTCGAGGAGGAGGCGTACGCGCGCGA
GGCGGGCAAGTACTTCACGCTGTCCGAGCTGCGCCGGCGCTTGGCCGACC
CCGAGGTGCGCGCCGGGCTGTCCGAGAGCCGCATCAAGCAGTACCGCTAC
GAGCTGAACCAGCGGCCGGCGTTCGCGCTGAGCTTCGTGCTGTTCGTGTT
CTTCGGCGCGCCGATCGGGTTGATGCTGCGGCGCGGGACGCGGCTCGCGG
CGATGACG
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