mRNA_M-pyrifera_M_contig127754.5591.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127754.5591.1
Unique NamemRNA_M-pyrifera_M_contig127754.5591.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig127754.5591.1 vs. uniprot
Match: A0A6L8EI84_9GAMM (DUF1329 domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6L8EI84_9GAMM)

HSP 1 Score: 171 bits (434), Expect = 1.820e-49
Identity = 78/115 (67.83%), Postives = 92/115 (80.00%), Query Frame = 1
Query:    1 TWELRKVYRVEATPKDKNHPLSKRIMNIDAQTFTLPQSSLYDRKGDFWKTFSICQAYPDEHHPINKGSGVAIDDCFMIIDVQAQHCTTGQFKGLLHKDRDAQNRMTVQYLRKAGK 345
            TWELRKVY +  TPKD NHPLS+R+M IDAQT+T+P+ + +DRKGD WK+FSICQAYPD H P NKGSGVAID+CFM+ DVQAQHCTTGQFKG L    +     TVQ LRK+G+
Sbjct:  321 TWELRKVYELHGTPKDPNHPLSRRVMYIDAQTYTIPRQAEFDRKGDLWKSFSICQAYPDRHLPKNKGSGVAIDNCFMMYDVQAQHCTTGQFKGQLDPTMNPPQMFTVQNLRKSGR 435          
BLAST of mRNA_M-pyrifera_M_contig127754.5591.1 vs. uniprot
Match: A0A0F2RCH5_9PROT (Uncharacterized protein n=1 Tax=Hyphomonas sp. BRH_c22 TaxID=1629710 RepID=A0A0F2RCH5_9PROT)

HSP 1 Score: 155 bits (393), Expect = 2.020e-43
Identity = 70/115 (60.87%), Postives = 90/115 (78.26%), Query Frame = 1
Query:    1 TWELRKVYRVEATPKDKNHPLSKRIMNIDAQTFTLPQSSLYDRKGDFWKTFSICQAYPDEHHPINKGSGVAIDDCFMIIDVQAQHCTTGQFKGLLHKDRDAQNRMTVQYLRKAGK 345
            TW+LRKVY +E+ P D NHP+SKR+  +DAQT+TLP++ +YDRKGD WKTF+I QA+PD H PINKGSGV+IDD F ++DVQA HCTTG F+G +    + Q++ TVQ LR  GK
Sbjct:  319 TWQLRKVYVLESDPVDDNHPVSKRVHYVDAQTYTLPRTLIYDRKGDLWKTFTIGQAHPDHHDPINKGSGVSIDDAFSMLDVQAGHCTTGHFRGRVDSKLNPQSKFTVQNLRATGK 433          
BLAST of mRNA_M-pyrifera_M_contig127754.5591.1 vs. uniprot
Match: A0A5A9W2I7_9GAMM (DUF1329 domain-containing protein n=1 Tax=Nitrincola tapanii TaxID=1708751 RepID=A0A5A9W2I7_9GAMM)

HSP 1 Score: 155 bits (391), Expect = 4.280e-43
Identity = 70/115 (60.87%), Postives = 91/115 (79.13%), Query Frame = 1
Query:    1 TWELRKVYRVEATPKDKNHPLSKRIMNIDAQTFTLPQSSLYDRKGDFWKTFSICQAYPDEHHPINKGSGVAIDDCFMIIDVQAQHCTTGQFKGLLHKDRDAQNRMTVQYLRKAGK 345
            TW+LRKVY VEA P D+NHP+S+R+  +DAQTFT+P++++YDR G+ WK + I QA+PD H PINKGSGVAIDD F +IDVQAQHCTTGQFKG++       ++M VQ LR +G+
Sbjct:  323 TWQLRKVYEVEAKPVDENHPVSRRVHYMDAQTFTIPRTNVYDRSGNLWKAWVIGQAHPDHHLPINKGSGVAIDDAFTMIDVQAQHCTTGQFKGIVDPSLTPPSKMNVQNLRASGR 437          
BLAST of mRNA_M-pyrifera_M_contig127754.5591.1 vs. uniprot
Match: A0A081G3E3_9GAMM (Uncharacterized protein n=3 Tax=Marinobacterium TaxID=48075 RepID=A0A081G3E3_9GAMM)

HSP 1 Score: 154 bits (390), Expect = 6.110e-43
Identity = 68/114 (59.65%), Postives = 91/114 (79.82%), Query Frame = 1
Query:    1 TWELRKVYRVEATPKDKNHPLSKRIMNIDAQTFTLPQSSLYDRKGDFWKTFSICQAYPDEHHPINKGSGVAIDDCFMIIDVQAQHCTTGQFKGLLHKDRDAQNRMTVQYLRKAG 342
            TW+LRKVY VE+ P+D+NHP+SKR   +DAQTFT+P++ +YDRKGD WK + I QA+PD H P+NKG+GV+IDD F +ID+QAQHCTTGQFKG++  +R   +  TVQ +R +G
Sbjct:  324 TWQLRKVYEVESIPQDENHPISKRTHFMDAQTFTIPRTVVYDRKGDMWKNWIIGQAHPDHHLPVNKGTGVSIDDAFSMIDIQAQHCTTGQFKGIVDPERSPVDIFTVQNMRASG 437          
BLAST of mRNA_M-pyrifera_M_contig127754.5591.1 vs. uniprot
Match: A0A366GYM1_9GAMM (Uncharacterized protein DUF1329 n=2 Tax=Marinobacter pelagius TaxID=379482 RepID=A0A366GYM1_9GAMM)

HSP 1 Score: 154 bits (390), Expect = 6.570e-43
Identity = 72/114 (63.16%), Postives = 87/114 (76.32%), Query Frame = 1
Query:    1 TWELRKVYRVEATPKDKNHPLSKRIMNIDAQTFTLPQSSLYDRKGDFWKTFSICQAYPDEHHPINKGSGVAIDDCFMIIDVQAQHCTTGQFKGLLHKDRDAQNRMTVQYLRKAG 342
            TW+LRKVY VE+ P D++HPLSKR+  +DAQTFT+P++  YDRKG  WKTF+I QA+PD H P NKGSGV+IDD F +IDVQA HCTTGQFKG +  +    N   VQYLR AG
Sbjct:  328 TWQLRKVYEVESVPVDESHPLSKRVHFMDAQTFTIPRTVSYDRKGSLWKTFTIGQAHPDHHLPKNKGSGVSIDDSFSMIDVQASHCTTGQFKGQVDPELTPTNMFNVQYLRAAG 441          
BLAST of mRNA_M-pyrifera_M_contig127754.5591.1 vs. uniprot
Match: A0A501PJU1_9PROT (DUF1329 domain-containing protein n=1 Tax=Emcibacter nanhaiensis TaxID=1505037 RepID=A0A501PJU1_9PROT)

HSP 1 Score: 154 bits (389), Expect = 8.420e-43
Identity = 70/115 (60.87%), Postives = 90/115 (78.26%), Query Frame = 1
Query:    1 TWELRKVYRVEATPKDKNHPLSKRIMNIDAQTFTLPQSSLYDRKGDFWKTFSICQAYPDEHHPINKGSGVAIDDCFMIIDVQAQHCTTGQFKGLLHKDRDAQNRMTVQYLRKAGK 345
            TW+LRKVY +E+ P D+NHP+SKR+  +DA+TFTLP++ +YDRKGD WKTF I QA+PD H P NKGSGV+IDD FM++DVQ +HCTTG FKG +    + +N+ TVQ LR  GK
Sbjct:  323 TWQLRKVYILESEPVDENHPISKRVHYVDAETFTLPRTVIYDRKGDLWKTFVIGQAHPDYHLPKNKGSGVSIDDSFMMLDVQGEHCTTGHFKGQVDPKLNPRNKFTVQNLRVTGK 437          
BLAST of mRNA_M-pyrifera_M_contig127754.5591.1 vs. uniprot
Match: J9DET6_9PROT (Uncharacterized protein n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=J9DET6_9PROT)

HSP 1 Score: 154 bits (388), Expect = 1.100e-42
Identity = 70/115 (60.87%), Postives = 88/115 (76.52%), Query Frame = 1
Query:    1 TWELRKVYRVEATPKDKNHPLSKRIMNIDAQTFTLPQSSLYDRKGDFWKTFSICQAYPDEHHPINKGSGVAIDDCFMIIDVQAQHCTTGQFKGLLHKDRDAQNRMTVQYLRKAGK 345
            TW+LRK Y +E+ P D+NHP+SKR+  +DAQTFT P++ +YDRKGD WKTF I QA+PD H  INKGSGV++DD F +IDVQA HCTTGQFKG +    + Q++ TVQ LR  GK
Sbjct:  319 TWQLRKAYVLESQPVDENHPISKRVHYVDAQTFTKPRTLIYDRKGDLWKTFLIGQAHPDNHDDINKGSGVSVDDSFSMIDVQADHCTTGQFKGQVDPSLNPQSKFTVQNLRATGK 433          
BLAST of mRNA_M-pyrifera_M_contig127754.5591.1 vs. uniprot
Match: UPI0014202EC1 (DUF1329 domain-containing protein n=1 Tax=Pseudomaricurvus alkylphenolicus TaxID=1306991 RepID=UPI0014202EC1)

HSP 1 Score: 154 bits (388), Expect = 1.340e-42
Identity = 69/115 (60.00%), Postives = 90/115 (78.26%), Query Frame = 1
Query:    1 TWELRKVYRVEATPKDKNHPLSKRIMNIDAQTFTLPQSSLYDRKGDFWKTFSICQAYPDEHHPINKGSGVAIDDCFMIIDVQAQHCTTGQFKGLLHKDRDAQNRMTVQYLRKAGK 345
            TW+LRKVY +EATP DKNHP+SKR   +DAQT+T+P++  YDRKGD WKTF+I QA+PD H   NKGSGV+IDD F ++D+QA HCTTGQFKG L  + + + + +VQ LR +G+
Sbjct:  330 TWQLRKVYELEATPVDKNHPISKRTHFVDAQTYTIPRTISYDRKGDMWKTFTIGQAHPDHHLEKNKGSGVSIDDSFSMVDIQASHCTTGQFKGQLDPEMNPRTKFSVQNLRASGR 444          
BLAST of mRNA_M-pyrifera_M_contig127754.5591.1 vs. uniprot
Match: A0A5P1R845_9GAMM (DUF1329 domain-containing protein n=1 Tax=Neptunomonas concharum TaxID=1031538 RepID=A0A5P1R845_9GAMM)

HSP 1 Score: 153 bits (386), Expect = 2.240e-42
Identity = 70/115 (60.87%), Postives = 90/115 (78.26%), Query Frame = 1
Query:    1 TWELRKVYRVEATPKDKNHPLSKRIMNIDAQTFTLPQSSLYDRKGDFWKTFSICQAYPDEHHPINKGSGVAIDDCFMIIDVQAQHCTTGQFKGLLHKDRDAQNRMTVQYLRKAGK 345
            TW+LRKVY VEA P D NHP+SKRI  +DAQTFT+P++S+YDRKGD WK ++I QA+PD H P NKGSGV+IDD F +IDVQA HCTTGQFKG +  +    ++ +VQ +R +G+
Sbjct:  321 TWQLRKVYEVEAEPVDPNHPISKRIHYMDAQTFTIPRTSVYDRKGDLWKIWTIGQAHPDYHLPKNKGSGVSIDDAFTMIDVQANHCTTGQFKGQVDPELSPPSKFSVQNMRSSGR 435          
BLAST of mRNA_M-pyrifera_M_contig127754.5591.1 vs. uniprot
Match: UPI001C989C91 (outer membrane lipoprotein-sorting protein n=1 Tax=Marinobacterium sp. CAU 1594 TaxID=2862496 RepID=UPI001C989C91)

HSP 1 Score: 153 bits (386), Expect = 2.290e-42
Identity = 68/115 (59.13%), Postives = 89/115 (77.39%), Query Frame = 1
Query:    1 TWELRKVYRVEATPKDKNHPLSKRIMNIDAQTFTLPQSSLYDRKGDFWKTFSICQAYPDEHHPINKGSGVAIDDCFMIIDVQAQHCTTGQFKGLLHKDRDAQNRMTVQYLRKAGK 345
            +W+LRKVY VEA P D NHP+SKR+  +DAQTFT+P+++ YDRKGD WK ++I QA+PD H P NKG+GV+IDD F +ID QAQHCTTGQFKGL+       ++ TVQ +R +G+
Sbjct:  322 SWQLRKVYEVEAVPVDPNHPISKRVHYMDAQTFTIPRTNTYDRKGDLWKAWTIGQAHPDHHLPANKGTGVSIDDSFSMIDTQAQHCTTGQFKGLVDPSLSPASKFTVQNMRASGR 436          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127754.5591.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6L8EI84_9GAMM1.820e-4967.83DUF1329 domain-containing protein n=1 Tax=Gammapro... [more]
A0A0F2RCH5_9PROT2.020e-4360.87Uncharacterized protein n=1 Tax=Hyphomonas sp. BRH... [more]
A0A5A9W2I7_9GAMM4.280e-4360.87DUF1329 domain-containing protein n=1 Tax=Nitrinco... [more]
A0A081G3E3_9GAMM6.110e-4359.65Uncharacterized protein n=3 Tax=Marinobacterium Ta... [more]
A0A366GYM1_9GAMM6.570e-4363.16Uncharacterized protein DUF1329 n=2 Tax=Marinobact... [more]
A0A501PJU1_9PROT8.420e-4360.87DUF1329 domain-containing protein n=1 Tax=Emcibact... [more]
J9DET6_9PROT1.100e-4260.87Uncharacterized protein n=2 Tax=Alphaproteobacteri... [more]
UPI0014202EC11.340e-4260.00DUF1329 domain-containing protein n=1 Tax=Pseudoma... [more]
A0A5P1R845_9GAMM2.240e-4260.87DUF1329 domain-containing protein n=1 Tax=Neptunom... [more]
UPI001C989C912.290e-4259.13outer membrane lipoprotein-sorting protein n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127754contigM-pyrifera_M_contig127754:152..499 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score156.0
Seed ortholog evalue1.1e-35
Seed eggNOG ortholog1232683.ADIMK_0255
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Outer membrane lipoprotein-sorting protein
EggNOG OGs1QTHZ@1224,1SM2W@1236,2C4IG@1,2Z8A1@2,4650V@72275
COG Functional cat.S
Best tax levelAlteromonadaceae
Best eggNOG OGNA|NA|NA
Exons1
Model size348
Cds size348
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815791.7445958-CDS-M-pyrifera_M_contig127754:151..4991622815791.7445958-CDS-M-pyrifera_M_contig127754:151..499Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127754 152..499 -
1692277571.5809913-CDS-M-pyrifera_M_contig127754:151..4991692277571.5809913-CDS-M-pyrifera_M_contig127754:151..499Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127754 152..499 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127754.5591.1prot_M-pyrifera_M_contig127754.5591.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127754 152..499 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127754.5591.1

>prot_M-pyrifera_M_contig127754.5591.1 ID=prot_M-pyrifera_M_contig127754.5591.1|Name=mRNA_M-pyrifera_M_contig127754.5591.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=116bp
TWELRKVYRVEATPKDKNHPLSKRIMNIDAQTFTLPQSSLYDRKGDFWKT
FSICQAYPDEHHPINKGSGVAIDDCFMIIDVQAQHCTTGQFKGLLHKDRD
AQNRMTVQYLRKAGK*
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mRNA from alignment at M-pyrifera_M_contig127754:152..499-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127754.5591.1 ID=mRNA_M-pyrifera_M_contig127754.5591.1|Name=mRNA_M-pyrifera_M_contig127754.5591.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=348bp|location=Sequence derived from alignment at M-pyrifera_M_contig127754:152..499- (Macrocystis pyrifera P11B4 male)
ACGTGGGAACTGCGCAAGGTCTATCGCGTCGAGGCAACGCCGAAAGACAA GAACCACCCCTTGTCGAAGCGGATCATGAACATCGATGCGCAGACGTTTA CACTACCGCAGAGTTCGCTCTACGACCGCAAGGGGGATTTCTGGAAGACG TTCTCGATCTGTCAGGCCTATCCGGATGAGCATCACCCGATCAACAAGGG CTCGGGTGTCGCGATCGATGACTGTTTCATGATCATCGACGTGCAGGCAC AGCATTGCACAACCGGGCAGTTCAAAGGGCTGTTGCACAAAGACCGTGAC GCGCAGAACCGCATGACCGTGCAGTACCTGCGCAAGGCGGGCAAGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127754:152..499-

>mRNA_M-pyrifera_M_contig127754.5591.1 ID=mRNA_M-pyrifera_M_contig127754.5591.1|Name=mRNA_M-pyrifera_M_contig127754.5591.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=696bp|location=Sequence derived from alignment at M-pyrifera_M_contig127754:152..499- (Macrocystis pyrifera P11B4 male)
ACGTGGGAACTGCGCAAGGTCTATCGCGTCGAGGCAACGCCGAAAGACAA
GAACCACCCCTTGTCGAAGCGGATCATGAACATCGATGCGCAGACGTTTA
CACTACCGCAGAGTTCGCTCTACGACCGCAAGGGGGATTTCTGGAAGACG
TTCTCGATCTGTCAGGCCTATCCGGATGAGCATCACCCGATCAACAAGGG
CTCGGGTGTCGCGATCGATGACTGTTTCATGATCATCGACGTGCAGGCAC
AGCATTGCACAACCGGGCAGTTCAAAGGGCTGTTGCACAAAGACCGTGAC
GCGCAGAACCGCATGACCGTGCAGTACCTGCGCAAGGCGGGCAAGTAAAC
GTGGGAACTGCGCAAGGTCTATCGCGTCGAGGCAACGCCGAAAGACAAGA
ACCACCCCTTGTCGAAGCGGATCATGAACATCGATGCGCAGACGTTTACA
CTACCGCAGAGTTCGCTCTACGACCGCAAGGGGGATTTCTGGAAGACGTT
CTCGATCTGTCAGGCCTATCCGGATGAGCATCACCCGATCAACAAGGGCT
CGGGTGTCGCGATCGATGACTGTTTCATGATCATCGACGTGCAGGCACAG
CATTGCACAACCGGGCAGTTCAAAGGGCTGTTGCACAAAGACCGTGACGC
GCAGAACCGCATGACCGTGCAGTACCTGCGCAAGGCGGGCAAGTAA
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