mRNA_M-pyrifera_M_contig127751.5590.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig127751.5590.1
Unique Name	mRNA_M-pyrifera_M_contig127751.5590.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

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BLAST of mRNA_M-pyrifera_M_contig127751.5590.1 vs. uniprot
Match: A0A5A8ELB5_CAFRO (EGF-like domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8ELB5_CAFRO)

HSP 1 Score: 90.1 bits (222), Expect = 6.690e-20
Identity = 36/46 (78.26%), Postives = 41/46 (89.13%), Query Frame = 1

Query:    1 GHFYAECSGAGLCDRSSGICDCFPPFGGSACNRTVCPSDCSGHGLC 138
            GHF +EC+G GLCDRSSG C CFP FGG+ACNRTVCP+DCSGHG+C
Sbjct:  132 GHFMSECAGVGLCDRSSGQCSCFPGFGGTACNRTVCPNDCSGHGIC 177

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BLAST of mRNA_M-pyrifera_M_contig127751.5590.1 vs. uniprot
Match: A0A7R9ZG72_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZG72_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.620e-16
Identity = 33/46 (71.74%), Postives = 37/46 (80.43%), Query Frame = 1

Query:    1 GHFYAECSGAGLCDRSSGICDCFPPFGGSACNRTVCPSDCSGHGLC 138
            GHFYAECS  G CDRSSG+C CF  + G+ACNRTVC +DCSGHG C
Sbjct:  162 GHFYAECSNRGTCDRSSGLCQCFTGYEGTACNRTVCLNDCSGHGTC 207

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BLAST of mRNA_M-pyrifera_M_contig127751.5590.1 vs. uniprot
Match: A0A7S2US48_9STRA (Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2US48_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 2.430e-15
Identity = 29/46 (63.04%), Postives = 34/46 (73.91%), Query Frame = 1

Query:    1 GHFYAECSGAGLCDRSSGICDCFPPFGGSACNRTVCPSDCSGHGLC 138
            GHFYAECS  GLCDR +G+C CF  + GS+C R  CP+ CSGHG C
Sbjct:   12 GHFYAECSAKGLCDRETGLCQCFTGYEGSSCQRASCPNACSGHGTC 57

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BLAST of mRNA_M-pyrifera_M_contig127751.5590.1 vs. uniprot
Match: A0A485L9H4_9STRA (Aste57867_17954 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L9H4_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 3.660e-15
Identity = 29/41 (70.73%), Postives = 36/41 (87.80%), Query Frame = 1

Query:   16 ECSGAGLCDRSSGICDCFPPFGGSACNRTVCPSDCSGHGLC 138
            ECSGAGLC+R++G+C CFP +GGSACN+  CP DCSGHG+C
Sbjct:  871 ECSGAGLCNRTTGLCQCFPGYGGSACNQMTCPHDCSGHGVC 911

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BLAST of mRNA_M-pyrifera_M_contig127751.5590.1 vs. uniprot
Match: A0A8K1CUK4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CUK4_PYTOL)

HSP 1 Score: 76.6 bits (187), Expect = 3.670e-15
Identity = 30/45 (66.67%), Postives = 35/45 (77.78%), Query Frame = 1

Query:    4 HFYAECSGAGLCDRSSGICDCFPPFGGSACNRTVCPSDCSGHGLC 138
            HFY ECS  G+CDRS+G+C CF  + GSAC RTVCP+ CSGHG C
Sbjct:  100 HFYLECSNKGICDRSTGLCQCFDGYEGSACQRTVCPAKCSGHGTC 144

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BLAST of mRNA_M-pyrifera_M_contig127751.5590.1 vs. uniprot
Match: V9M593_9STRA (OCM1 (Fragment) n=1 Tax=Globisporangium rhizosaccharum TaxID=222890 RepID=V9M593_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 4.980e-15
Identity = 31/45 (68.89%), Postives = 34/45 (75.56%), Query Frame = 1

Query:    4 HFYAECSGAGLCDRSSGICDCFPPFGGSACNRTVCPSDCSGHGLC 138
            HFY ECS  GLCDR++G+C CF  F GSAC RT CPS CSGHG C
Sbjct:   64 HFYMECSNKGLCDRATGLCACFDGFEGSACQRTTCPSKCSGHGTC 108

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BLAST of mRNA_M-pyrifera_M_contig127751.5590.1 vs. uniprot
Match: V9M555_9STRA (OCM1 (Fragment) n=1 Tax=Globisporangium pleroticum TaxID=289605 RepID=V9M555_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 5.000e-15
Identity = 31/45 (68.89%), Postives = 34/45 (75.56%), Query Frame = 1

Query:    4 HFYAECSGAGLCDRSSGICDCFPPFGGSACNRTVCPSDCSGHGLC 138
            HFY ECS  GLCDR++G+C CF  F GSAC RT CPS CSGHG C
Sbjct:   64 HFYMECSNKGLCDRATGLCACFDGFEGSACQRTTCPSKCSGHGTC 108

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BLAST of mRNA_M-pyrifera_M_contig127751.5590.1 vs. uniprot
Match: A0A813AFR8_9DINO (TNC protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813AFR8_9DINO)

HSP 1 Score: 73.6 bits (179), Expect = 9.000e-15
Identity = 30/45 (66.67%), Postives = 33/45 (73.33%), Query Frame = 1

Query:    4 HFYAECSGAGLCDRSSGICDCFPPFGGSACNRTVCPSDCSGHGLC 138
            HFYAECS  G CDR+ G C CF  + GSAC RT CP+DCSGHG C
Sbjct:  106 HFYAECSNKGFCDRALGQCACFDGYTGSACQRTTCPNDCSGHGQC 150

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BLAST of mRNA_M-pyrifera_M_contig127751.5590.1 vs. uniprot
Match: V9M558_9STRA (OCM1 (Fragment) n=1 Tax=Globisporangium segnitium TaxID=209243 RepID=V9M558_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 9.280e-15
Identity = 30/45 (66.67%), Postives = 34/45 (75.56%), Query Frame = 1

Query:    4 HFYAECSGAGLCDRSSGICDCFPPFGGSACNRTVCPSDCSGHGLC 138
            HFY ECS  G+CDR++G+C CF  F GSAC RT CPS CSGHG C
Sbjct:   64 HFYMECSNKGICDRATGLCACFDGFEGSACQRTTCPSKCSGHGTC 108

[Close]

BLAST of mRNA_M-pyrifera_M_contig127751.5590.1 vs. uniprot
Match: A0A6G0WB55_9STRA (EGF-like domain-containing protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A6G0WB55_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 9.350e-15
Identity = 29/45 (64.44%), Postives = 35/45 (77.78%), Query Frame = 1

Query:    4 HFYAECSGAGLCDRSSGICDCFPPFGGSACNRTVCPSDCSGHGLC 138
            HFY ECS  G+CDR++GIC+CFP F GSAC R  C +DCS HG+C
Sbjct:  104 HFYMECSNMGICDRTTGICECFPGFDGSACQRATCANDCSKHGVC 148

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig127751.5590.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig127751.5590.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A5A8ELB5_CAFRO	6.690e-20	78.26	EGF-like domain-containing protein n=3 Tax=Cafeter...	[more]
A0A7R9ZG72_9STRA	1.620e-16	71.74	Hypothetical protein (Fragment) n=1 Tax=Pseudictyo...	[more]
A0A7S2US48_9STRA	2.430e-15	63.04	Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa...	[more]
A0A485L9H4_9STRA	3.660e-15	70.73	Aste57867_17954 protein n=1 Tax=Aphanomyces stella...	[more]
A0A8K1CUK4_PYTOL	3.670e-15	66.67	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
V9M593_9STRA	4.980e-15	68.89	OCM1 (Fragment) n=1 Tax=Globisporangium rhizosacch...	[more]
V9M555_9STRA	5.000e-15	68.89	OCM1 (Fragment) n=1 Tax=Globisporangium pleroticum...	[more]
A0A813AFR8_9DINO	9.000e-15	66.67	TNC protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230...	[more]
V9M558_9STRA	9.280e-15	66.67	OCM1 (Fragment) n=1 Tax=Globisporangium segnitium ...	[more]
A0A6G0WB55_9STRA	9.350e-15	64.44	EGF-like domain-containing protein n=3 Tax=Aphanom...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig127751	contig	M-pyrifera_M_contig127751:162..299 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	72.0
Seed ortholog evalue	8.1e-11
Seed eggNOG ortholog	2880.D8LFY3
Hectar predicted targeting category	no signal peptide or anchor
EggNOG free text desc.	regulation of canonical Wnt signaling pathway involved in osteoblast differentiation
EggNOG OGs	KOG1225@1,KOG1225@2759
COG Functional cat.	L
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Exons	1
Model size	138
Cds size	138
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815791.714187-CDS-M-pyrifera_M_contig127751:161..299	1622815791.714187-CDS-M-pyrifera_M_contig127751:161..299	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig127751 162..299 -
1692277571.5698335-CDS-M-pyrifera_M_contig127751:161..299	1692277571.5698335-CDS-M-pyrifera_M_contig127751:161..299	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig127751 162..299 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig127751.5590.1	prot_M-pyrifera_M_contig127751.5590.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig127751 162..299 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig127751:162..299-
coding sequence from alignment at M-pyrifera_M_contig127751:162..299-

protein sequence of mRNA_M-pyrifera_M_contig127751.5590.1

>prot_M-pyrifera_M_contig127751.5590.1 ID=prot_M-pyrifera_M_contig127751.5590.1|Name=mRNA_M-pyrifera_M_contig127751.5590.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=46bp
GHFYAECSGAGLCDRSSGICDCFPPFGGSACNRTVCPSDCSGHGLC

mRNA from alignment at M-pyrifera_M_contig127751:162..299-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig127751.5590.1 ID=mRNA_M-pyrifera_M_contig127751.5590.1|Name=mRNA_M-pyrifera_M_contig127751.5590.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=138bp|location=Sequence derived from alignment at M-pyrifera_M_contig127751:162..299- (Macrocystis pyrifera P11B4 male)
GGCCACTTTTACGCCGAGTGCTCTGGCGCTGGATTGTGTGACCGATCTTC
CGGAATCTGTGACTGCTTCCCACCATTCGGCGGAAGCGCTTGCAACCGTA
CTGTGTGCCCTAGCGATTGCAGTGGACATGGGTTGTGC

Coding sequence (CDS) from alignment at M-pyrifera_M_contig127751:162..299-

>mRNA_M-pyrifera_M_contig127751.5590.1 ID=mRNA_M-pyrifera_M_contig127751.5590.1|Name=mRNA_M-pyrifera_M_contig127751.5590.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=276bp|location=Sequence derived from alignment at M-pyrifera_M_contig127751:162..299- (Macrocystis pyrifera P11B4 male)
GGCCACTTTTACGCCGAGTGCTCTGGCGCTGGATTGTGTGACCGATCTTC
CGGAATCTGTGACTGCTTCCCACCATTCGGCGGAAGCGCTTGCAACCGTA
CTGTGTGCCCTAGCGATTGCAGTGGACATGGGTTGTGCGGCCACTTTTAC
GCCGAGTGCTCTGGCGCTGGATTGTGTGACCGATCTTCCGGAATCTGTGA
CTGCTTCCCACCATTCGGCGGAAGCGCTTGCAACCGTACTGTGTGCCCTA
GCGATTGCAGTGGACATGGGTTGTGC