mRNA_M-pyrifera_M_contig127736.5587.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127736.5587.1
Unique NamemRNA_M-pyrifera_M_contig127736.5587.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig127736.5587.1 vs. uniprot
Match: A0A2E7KJV7_9PLAN (Uncharacterized protein n=3 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KJV7_9PLAN)

HSP 1 Score: 206 bits (524), Expect = 4.120e-66
Identity = 107/109 (98.17%), Postives = 108/109 (99.08%), Query Frame = 1 
Query:    1 AYRDRDESSAAADLPLLSTQCRRHPLAMTALLLPVAGLLLVFTPLAPRGESFTYAWFAIIGFLSIVCAGLAVRDIRLTPERYSGMGIAIAGALFLPVVILATLFVLQIT 327
            AYRDRDESSAAADLPLLSTQCRRHPLAMTALLLPVAGLLL+FTPLAPRGESFTYAWFAIIGFLSIVCAGLA RDIRLTPERYSGMGIAIAGALFLPVVILATLFVLQIT
Sbjct:   77 AYRDRDESSAAADLPLLSTQCRRHPLAMTALLLPVAGLLLIFTPLAPRGESFTYAWFAIIGFLSIVCAGLAARDIRLTPERYSGMGIAIAGALFLPVVILATLFVLQIT 185
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BLAST of mRNA_M-pyrifera_M_contig127736.5587.1 vs. uniprot
Match: A0A5A8BS57_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A5A8BS57_9PLAN)

HSP 1 Score: 179 bits (455), Expect = 1.300e-55
Identity = 97/109 (88.99%), Postives = 99/109 (90.83%), Query Frame = 1 
Query:    1 AYRDRDESSAAADLPLLSTQCRRHPLAMTALLLPVAGLLLVFTPLAPRGESFTYAWFAIIGFLSIVCAGLAVRDIRLTPERYSGMGIAIAGALFLPVVILATLFVLQIT 327
            AYRDRDE +AAAD PL  TQ RRHPLAMTALLLPVAGLLLVFTPLAPRGE FTYAWFAIIGFLSIV AGLA RDIRLTPERYSG GIAI+GALFLPVVIL TLFVLQIT
Sbjct:   77 AYRDRDEMTAAADSPLKITQRRRHPLAMTALLLPVAGLLLVFTPLAPRGELFTYAWFAIIGFLSIVFAGLASRDIRLTPERYSGTGIAISGALFLPVVILVTLFVLQIT 185
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127736.5587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2E7KJV7_9PLAN4.120e-6698.17Uncharacterized protein n=3 Tax=Gimesia TaxID=1649... [more]
A0A5A8BS57_9PLAN1.300e-5588.99Uncharacterized protein n=1 Tax=Gimesia chilikensi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127736contigM-pyrifera_M_contig127736:1..330 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size330
Cds size330
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815791.603219-CDS-M-pyrifera_M_contig127736:0..3301622815791.603219-CDS-M-pyrifera_M_contig127736:0..330Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127736 1..330 +
1692277571.526447-CDS-M-pyrifera_M_contig127736:0..3301692277571.526447-CDS-M-pyrifera_M_contig127736:0..330Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127736 1..330 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127736.5587.1prot_M-pyrifera_M_contig127736.5587.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127736 1..330 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127736.5587.1

>prot_M-pyrifera_M_contig127736.5587.1 ID=prot_M-pyrifera_M_contig127736.5587.1|Name=mRNA_M-pyrifera_M_contig127736.5587.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=110bp
AYRDRDESSAAADLPLLSTQCRRHPLAMTALLLPVAGLLLVFTPLAPRGE
SFTYAWFAIIGFLSIVCAGLAVRDIRLTPERYSGMGIAIAGALFLPVVIL
ATLFVLQIT*
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mRNA from alignment at M-pyrifera_M_contig127736:1..330+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127736.5587.1 ID=mRNA_M-pyrifera_M_contig127736.5587.1|Name=mRNA_M-pyrifera_M_contig127736.5587.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig127736:1..330+ (Macrocystis pyrifera P11B4 male)
GCCTACCGAGACAGAGATGAATCATCAGCTGCTGCAGATTTACCACTACT
ATCCACGCAGTGCAGACGTCACCCGCTTGCGATGACCGCCTTGCTCCTGC
CTGTCGCAGGATTGCTGCTGGTCTTCACTCCGCTGGCTCCACGCGGAGAG
TCATTCACGTACGCATGGTTTGCTATCATCGGCTTTCTGAGCATCGTCTG
CGCTGGGCTGGCGGTGCGCGACATACGTCTGACACCGGAACGATACTCCG
GTATGGGGATCGCCATCGCCGGAGCTCTGTTCCTGCCTGTCGTTATCCTG
GCAACGCTCTTCGTCCTGCAAATTACTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127736:1..330+

>mRNA_M-pyrifera_M_contig127736.5587.1 ID=mRNA_M-pyrifera_M_contig127736.5587.1|Name=mRNA_M-pyrifera_M_contig127736.5587.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=660bp|location=Sequence derived from alignment at M-pyrifera_M_contig127736:1..330+ (Macrocystis pyrifera P11B4 male)
GCCTACCGAGACAGAGATGAATCATCAGCTGCTGCAGATTTACCACTACT
ATCCACGCAGTGCAGACGTCACCCGCTTGCGATGACCGCCTTGCTCCTGC
CTGTCGCAGGATTGCTGCTGGTCTTCACTCCGCTGGCTCCACGCGGAGAG
TCATTCACGTACGCATGGTTTGCTATCATCGGCTTTCTGAGCATCGTCTG
CGCTGGGCTGGCGGTGCGCGACATACGTCTGACACCGGAACGATACTCCG
GTATGGGGATCGCCATCGCCGGAGCTCTGTTCCTGCCTGTCGTTATCCTG
GCAACGCTCTTCGTCCTGCAAATTACTTGAGCCTACCGAGACAGAGATGA
ATCATCAGCTGCTGCAGATTTACCACTACTATCCACGCAGTGCAGACGTC
ACCCGCTTGCGATGACCGCCTTGCTCCTGCCTGTCGCAGGATTGCTGCTG
GTCTTCACTCCGCTGGCTCCACGCGGAGAGTCATTCACGTACGCATGGTT
TGCTATCATCGGCTTTCTGAGCATCGTCTGCGCTGGGCTGGCGGTGCGCG
ACATACGTCTGACACCGGAACGATACTCCGGTATGGGGATCGCCATCGCC
GGAGCTCTGTTCCTGCCTGTCGTTATCCTGGCAACGCTCTTCGTCCTGCA
AATTACTTGA
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