mRNA_M-pyrifera_M_contig12773.5586.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12773.5586.1
Unique NamemRNA_M-pyrifera_M_contig12773.5586.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12773.5586.1 vs. uniprot
Match: D8LRZ0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRZ0_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 4.480e-29
Identity = 55/81 (67.90%), Postives = 70/81 (86.42%), Query Frame = 1 
Query:   22 PSPSSVRKCLQVMEDALARFPDSSEVLLFFAEVVISMGDFARGLKLLKSSASLDPECPIPYVNAARAYLGMNDLVAARRHL 264
            PSPSS+ KC+QV+E++   FP++ EVL FFAEV+ISMGDF +GL+ L+++ASLDPECP+PYVNAARAYLGMND  AARR +
Sbjct:  761 PSPSSLSKCVQVLEESRELFPENPEVLFFFAEVLISMGDFKKGLEFLQTAASLDPECPVPYVNAARAYLGMNDTKAARRQV 841
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BLAST of mRNA_M-pyrifera_M_contig12773.5586.1 vs. uniprot
Match: A0A835YUV6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUV6_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 1.040e-20
Identity = 50/120 (41.67%), Postives = 72/120 (60.00%), Query Frame = 1 
Query:   28 PSSVRKCLQVMEDALARFPDSSEVLLFFAEVVISMGDFARGLKLLKSSASLDPECPIPYVNAARAYLGMNDLVAARRHLERGQELDATYP----------GTFMDMGQLLMQESSPAEAL 357
            P  + + L++++DA    PDS EV LF +EV+  +GDFA  L LL ++A+ DP CP+PYVNA RA+ GM DL +ARRHL R  ++ A  P          G ++D GQ+  +     EA+
Sbjct:  914 PYRMDQALRILKDASWTHPDSVEVALFHSEVLTHLGDFAGALALLAAAAAKDPSCPLPYVNAGRAFTGMGDLPSARRHLARAMQVRARAPSQEDVDPLCSGAYLDFGQVETRAGHVQEAM 1033
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BLAST of mRNA_M-pyrifera_M_contig12773.5586.1 vs. uniprot
Match: A0A6S9M461_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9M461_HETAK)

HSP 1 Score: 76.6 bits (187), Expect = 1.670e-14
Identity = 36/98 (36.73%), Postives = 56/98 (57.14%), Query Frame = 1 
Query:   49 LQVMEDALARFPDSSEVLLFFAEVVISMGDFARGLKLLKSSASLDPECPIPYVNAARAYLGMNDLVAARRHLERGQELDATYPGTFMDMGQLLMQESS 342
            L+ +E A    PD+ EVLLF+ E++  +GDF + L L + +A + P CP+P+VNA RAYL +ND  A                  ++D+GQLL+  ++
Sbjct:  136 LRQIERAHRLHPDNVEVLLFYGEMLTQVGDFKKALALFRRAAEVSPRCPLPFVNAGRAYLSLNDHAAXXXXXXXXXXXXXXXXXAYLDLGQLLLNRAA 233
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BLAST of mRNA_M-pyrifera_M_contig12773.5586.1 vs. uniprot
Match: A0A7S2WSB2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WSB2_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 2.140e-14
Identity = 43/115 (37.39%), Postives = 61/115 (53.04%), Query Frame = 1 
Query:   52 QVMEDALARFPDSSEVLLFFAEVVISMGDFARGLKLLKSSASLDPE-------------CPIPYVNAARAYLGMNDLVAARRHLERGQELDATYPGTFMDMGQLLMQESSPAEAL 357
            +++  A+++ PD  E+LL   E+V   GDF   L+   ++A    E             CP+PYVNA RAYL MN+ V A RHLER +E+D       +D+GQL +Q      AL
Sbjct:  436 RLLRKAVSKHPDQGELLLLHGELVAQGGDFLGALEKFAAAAQGSDEAEVGHVPTALPRGCPLPYVNAGRAYLQMNEPVLAERHLERAKEVDPFCAACHLDLGQLWVQRGDVVRAL 550
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BLAST of mRNA_M-pyrifera_M_contig12773.5586.1 vs. uniprot
Match: A0A7S2CEM9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CEM9_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.140e-7
Identity = 27/67 (40.30%), Postives = 39/67 (58.21%), Query Frame = 1 
Query:  157 LLKSSASLDPECPIPYVNAARAYLGMNDLVAARRHLERGQELDATYPGTFMDMGQLLMQESSPAEAL 357
            ++  + +L   CP+PYVNA RAYL MN+ V A  HL    E+D +     +D+GQL +Q     +AL
Sbjct:   27 IVSVATALPAGCPLPYVNAGRAYLQMNEPVLAELHLNHALEVDDSCAACHLDLGQLWLQRGDMEKAL 93
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BLAST of mRNA_M-pyrifera_M_contig12773.5586.1 vs. uniprot
Match: A0A7X1P611_9PROT (PEP-CTERM system TPR-repeat protein PrsT n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7X1P611_9PROT)

HSP 1 Score: 51.2 bits (121), Expect = 6.060e-5
Identity = 33/114 (28.95%), Postives = 51/114 (44.74%), Query Frame = 1 
Query:   13 LKQPSPSSVRKCLQVMEDALARFPDSSEVLLFFAEVVISMGDFARGLKLLKSSASLDPECPIPYVNAARAYLGMNDLVAARRHLERGQELDATYPGTFMDMGQLLMQESSPAEA 354
            L Q +   V      ++ A A   D     +      +    +A+ LK  ++  S  P  P+ Y   A AY+G ND+ AARR LE+   L   Y    +++ QL +QE + A A
Sbjct:  418 LSQLAAGDVDAATAELQSASALDGDRYHADVLLISTHLQRRQYAQALKAARALESKQPSNPMTYNLLAAAYIGSNDIPAARRSLEKSLALQPGYTPAALNLAQLDLQEGNKAAA 531
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12773.5586.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LRZ0_ECTSI4.480e-2967.90Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YUV6_9STRA1.040e-2041.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6S9M461_HETAK1.670e-1436.73Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2WSB2_9STRA2.140e-1437.39Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2CEM9_9STRA1.140e-740.30Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7X1P611_9PROT6.060e-528.95PEP-CTERM system TPR-repeat protein PrsT n=1 Tax=B... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12773contigM-pyrifera_M_contig12773:7393..8814 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.4
Seed ortholog evalue1.2e-24
Seed eggNOG ortholog2880.D8LRZ0
Preferred nameTOMM70A
KEGG koko:K00738,ko:K17768
KEGG TC3.A.8.1
KEGG ReactionR05987
KEGG Pathwayko00510,ko00513,ko01100,map00510,map00513,map01100
KEGG ModuleM00075
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0001558,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005742,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009719,GO:0009725,GO:0009987,GO:0010033,GO:0010243,GO:0010611,GO:0010614,GO:0010721,GO:0014070,GO:0014741,GO:0014743,GO:0015031,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016202,GO:0017038,GO:0019867,GO:0022804,GO:0022857,GO:0022884,GO:0030150,GO:0030308,GO:0030943,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031306,GO:0031307,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0032592,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034613,GO:0040008,GO:0042221,GO:0042277,GO:0042493,GO:0042886,GO:0042887,GO:0043200,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043502,GO:0044057,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045039,GO:0045184,GO:0045595,GO:0045596,GO:0045843,GO:0045926,GO:0046620,GO:0046621,GO:0046907,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048634,GO:0048635,GO:0048638,GO:0048640,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051093,GO:0051128,GO:0051147,GO:0051148,GO:0051153,GO:0051154,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051239,GO:0051241,GO:0051641,GO:0051649,GO:0055021,GO:0055022,GO:0055024,GO:0055026,GO:0055085,GO:0060284,GO:0060420,GO:0061024,GO:0061050,GO:0061052,GO:0061117,GO:0065002,GO:0065007,GO:0070201,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072655,GO:0072657,GO:0090087,GO:0090150,GO:0090151,GO:0090257,GO:0097066,GO:0097068,GO:0098573,GO:0098588,GO:0098796,GO:0098798,GO:0098799,GO:0098805,GO:1901698,GO:1901700,GO:1901861,GO:1901862,GO:1904386,GO:1904589,GO:1904591,GO:1904680,GO:1904951,GO:1905207,GO:1905208,GO:1990542,GO:2000026,GO:2000725,GO:2000726
EggNOG free text desc.protein transmembrane transport
EggNOG OGsKOG0547@1,KOG0547@2759
EC2.4.1.145
COG Functional cat.S
CAZyGT54
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko02000,ko03029
Exons3
Model size366
Cds size366
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12773.5586.1prot_M-pyrifera_M_contig12773.5586.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12773 7393..8814 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815791.5440702-CDS-M-pyrifera_M_contig12773:7392..75011622815791.5440702-CDS-M-pyrifera_M_contig12773:7392..7501Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12773 7393..7501 -
1692277571.48649-CDS-M-pyrifera_M_contig12773:7392..75011692277571.48649-CDS-M-pyrifera_M_contig12773:7392..7501Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12773 7393..7501 -
1622815791.5555758-CDS-M-pyrifera_M_contig12773:7846..79861622815791.5555758-CDS-M-pyrifera_M_contig12773:7846..7986Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12773 7847..7986 -
1692277571.507809-CDS-M-pyrifera_M_contig12773:7846..79861692277571.507809-CDS-M-pyrifera_M_contig12773:7846..7986Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12773 7847..7986 -
1622815791.5697691-CDS-M-pyrifera_M_contig12773:8697..88141622815791.5697691-CDS-M-pyrifera_M_contig12773:8697..8814Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12773 8698..8814 -
1692277571.5162983-CDS-M-pyrifera_M_contig12773:8697..88141692277571.5162983-CDS-M-pyrifera_M_contig12773:8697..8814Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12773 8698..8814 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12773.5586.1

>prot_M-pyrifera_M_contig12773.5586.1 ID=prot_M-pyrifera_M_contig12773.5586.1|Name=mRNA_M-pyrifera_M_contig12773.5586.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=122bp
MSCLLKQPSPSSVRKCLQVMEDALARFPDSSEVLLFFAEVVISMGDFARG
LKLLKSSASLDPECPIPYVNAARAYLGMNDLVAARRHLERGQELDATYPG
TFMDMGQLLMQESSPAEALAM*
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mRNA from alignment at M-pyrifera_M_contig12773:7393..8814-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12773.5586.1 ID=mRNA_M-pyrifera_M_contig12773.5586.1|Name=mRNA_M-pyrifera_M_contig12773.5586.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1422bp|location=Sequence derived from alignment at M-pyrifera_M_contig12773:7393..8814- (Macrocystis pyrifera P11B4 male)
ATGTCATGTCTGTTGAAGCAGCCATCTCCATCGTCGGTGAGAAAGTGCTT
GCAAGTCATGGAGGATGCTCTGGCGCGTTTTCCAGACAGCTCGGAGGTCC
TCCTCTTCTTCGCTGAGGTATGCTTCATATTAATATATAGTCATGCCATA
TTAGGAAGTATTATTATTATTATGCTTGCCTTCCGACAATACAGCGTAGA
TGCCGTTCCTATATAAACCGAATATCCTTCCGTAAATCAGTAGTATCCCT
AAATTGTAATATTCTAGGAGCTCGTTATATTTTAATGTTGCATTACTGTG
GGAAATCCGGATGCAACGGTGGGATCCATTTTTGCGATCTTGGTCTGATA
TTCTGCGATCAAGCATTTATGTACGTGCAACGGCAAGCGGCAGCATACCG
ACCATACCACACCACACGACGAGATATTCAGCAAACATGCTCACGCATAG
CTGCTCTTCGAAAGTCAACCCAACAGGGTAATCATTTCAAAACAAAGCAA
CCAACAACTGCTGATATCCTGCGGTGCCAGGATGCTAAGATCAACTGTAG
ATGGCATCGTCGATAGATGCGGTCTGCTGCCATGGCTTTCCAGTAGTTTG
GTACCCCACTGGAAGTTGAAACAACTCGCCCAAGACATGAAACAATTCGA
ATATCTCAAATACTGTATCCATACATAGCTGCCCCCTCTGCACGCAAATT
TTACAGTACTGTTCAAACTTGGCAGGGAGAAATCTTAGCGGCAAGCTTTT
GGGGGGCACGGGGGGTTGATTCACCCCGCGAACGACTACTGTTAATATGA
TAACCGTGTGAACAAACACTCCGCCCAGGTTGTGATCAGCATGGGAGATT
TTGCGAGGGGGTTGAAGCTGCTGAAGAGTTCGGCATCACTGGATCCCGAG
TGCCCGATCCCGTACGTGAACGCCGCCAGAGCGTACCTCGGAATGAATGA
CTTGGTGGCCGCCCGAAGGCAAGTGTATTTTTTTGCAGCACACCTTGTGT
GCACCGGAATTATTGTACAACAGGCTATCGCAACTCACTCTTGGAATTTG
CGTTGTACCTGGCATGTCCCATGCATGGTCTTGCCGCCTACCGTAGCAGT
AGAGTGGTGTCCCCGGTTAGAGACTGCTGTGATAATCGCATGTGACTCAT
GTCCGCAACATGGATTTCAGCTACTGCCTGTAGGAGCGCTCGGGGGCAAC
TTGGTGTGCGTGATTGCCTTGGTAGCGTGGACTAAGAGCTTCGGAGCAAT
AGTTCTCACTCTCGTCTGACAAGTTTTCCACGCGGTTGGACTACTGTATG
TGCGATTTCTTAGGCATTTGGAGAGGGGACAAGAGCTGGATGCAACCTAT
CCCGGCACTTTCATGGACATGGGACAGCTCCTCATGCAAGAAAGCTCGCC
TGCAGAGGCCCTCGCCATGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12773:7393..8814-

>mRNA_M-pyrifera_M_contig12773.5586.1 ID=mRNA_M-pyrifera_M_contig12773.5586.1|Name=mRNA_M-pyrifera_M_contig12773.5586.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=732bp|location=Sequence derived from alignment at M-pyrifera_M_contig12773:7393..8814- (Macrocystis pyrifera P11B4 male)
ATGTCATGTCTGTTGAAGCAGCCATCTCCATCGTCGGTGAGAAAGTGCTT
GCAAGTCATGGAGGATGCTCTGGCGCGTTTTCCAGACAGCTCGGAGGTCC
TCCTCTTCTTCGCTGAGATGTCATGTCTGTTGAAGCAGCCATCTCCATCG
TCGGTGAGAAAGTGCTTGCAAGTCATGGAGGATGCTCTGGCGCGTTTTCC
AGACAGCTCGGAGGTCCTCCTCTTCTTCGCTGAGGTTGTGATCAGCATGG
GAGATTTTGCGAGGGGGTTGAAGCTGCTGAAGAGTTCGGCATCACTGGAT
CCCGAGTGCCCGATCCCGTACGTGAACGCCGCCAGAGCGTACCTCGGAAT
GAATGACTTGGTGGCCGCCCGAAGGTTGTGATCAGCATGGGAGATTTTGC
GAGGGGGTTGAAGCTGCTGAAGAGTTCGGCATCACTGGATCCCGAGTGCC
CGATCCCGTACGTGAACGCCGCCAGAGCGTACCTCGGAATGAATGACTTG
GTGGCCGCCCGAAGGCATTTGGAGAGGGGACAAGAGCTGGATGCAACCTA
TCCCGGCACTTTCATGGACATGGGACAGCTCCTCATGCAAGAAAGCTCGC
CTGCAGAGGCCCTCGCCATGTAAGCATTTGGAGAGGGGACAAGAGCTGGA
TGCAACCTATCCCGGCACTTTCATGGACATGGGACAGCTCCTCATGCAAG
AAAGCTCGCCTGCAGAGGCCCTCGCCATGTAA
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