mRNA_M-pyrifera_M_contig12772.5583.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12772.5583.1
Unique NamemRNA_M-pyrifera_M_contig12772.5583.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig12772.5583.1 vs. uniprot
Match: D7G6B4_ECTSI (Rab11B, RAB family GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6B4_ECTSI)

HSP 1 Score: 399 bits (1026), Expect = 8.190e-140
Identity = 203/229 (88.65%), Postives = 213/229 (93.01%), Query Frame = 1
Query:    1 MASRPSLEYDYLFKIVLVGDAAVGKTNLLACYTSQDKRPRADGTVPSFRSDRKTTVGVEFATMVVTHPDGKRIKAQIWDTAGQERYRAITSSHYKRASGALLVYDVTSRSSFENAERVWLRELRNAADSTSSLLDCLVIVGNKVDLPNAEVTEGEQEASASRMGLASSARVSAKTGQGVDKAFERLILRVYEVEHGRGEQAAPPTEAPPRGIVLADSKPPVSQENNDCC 687
            MASR SLEYDYLFKIVLVGDAAVGKTNLLACYTSQDKR R DGTVPSFRSDRKTTVGVEFATMVVTHPDGKRIKAQIWDTAGQERYRAITSSHYKRASGALLVYDVTSRSSFENAE+VWLREL+NAADS SSLLD LV+VGNKVDLPNA+VTE EQE+SA RMGLASSARVSAKTGQGVDKAFERLILRVYEVEHGRG+QAAPP EA P+GIVLA  KP   ++  +CC
Sbjct:    1 MASRSSLEYDYLFKIVLVGDAAVGKTNLLACYTSQDKRQRPDGTVPSFRSDRKTTVGVEFATMVVTHPDGKRIKAQIWDTAGQERYRAITSSHYKRASGALLVYDVTSRSSFENAEKVWLRELKNAADSNSSLLDSLVLVGNKVDLPNADVTEAEQESSAMRMGLASSARVSAKTGQGVDKAFERLILRVYEVEHGRGQQAAPPKEAAPKGIVLATPKPRAEEDKLECC 229          
BLAST of mRNA_M-pyrifera_M_contig12772.5583.1 vs. uniprot
Match: A0A6G0WZ29_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WZ29_9STRA)

HSP 1 Score: 229 bits (585), Expect = 1.020e-72
Identity = 122/236 (51.69%), Postives = 166/236 (70.34%), Query Frame = 1
Query:    1 MASRPSLEYDYLFKIVLVGDAAVGKTNLLACYTSQDKRPRADGTVPS---FRSDRKTTVGVEFATMVVTHPDGKRIKAQIWDTAGQERYRAITSSHYKRASGALLVYDVTSRSSFENAERVWLRELRNAADSTSSLLDCLVIVGNKVDLPN----AEVTEGEQEASASRMGLASSARVSAKTGQGVDKAFERLILRVYEVEHGRGEQAAPPTEAPPRGIVLADSKPPVSQENNDCC 687
            M      +YD L+K+VLVGD  VGKTNLLA +T+ +     D +  +   F + RK T+GVEF T ++THP+GKRIKAQIWDTAGQERYRAITSSHY+RA+GAL+VYDV+SRS+F+NA+  WL+ELRN+AD+ S+LL CL++VGNK+DL      + V++ + +A+ S  G+ S  R SAKTGQ V +AFE+L++ VY  +  R    A P EAP   + L+   PP  ++ N+CC
Sbjct:    1 MTCAADQQYDELYKVVLVGDPGVGKTNLLAYFTATEDEMAIDSSTNASKIFSAVRKPTIGVEFGTKIITHPNGKRIKAQIWDTAGQERYRAITSSHYRRAAGALIVYDVSSRSTFDNAQSHWLKELRNSADTNSTLLSCLMLVGNKIDLAKDPSVSVVSQEDHDAAISEAGIMS-IRASAKTGQNVVEAFEKLVIEVYNQDKARN---AKPEEAPAPSVDLSAPAPP--KKKNNCC 230          
BLAST of mRNA_M-pyrifera_M_contig12772.5583.1 vs. uniprot
Match: A0A485LBE8_9STRA (Aste57867_18857 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LBE8_9STRA)

HSP 1 Score: 226 bits (576), Expect = 5.940e-71
Identity = 121/228 (53.07%), Postives = 160/228 (70.18%), Query Frame = 1
Query:   25 YDYLFKIVLVGDAAVGKTNLLACYTSQDKRPRADGTVPS---FRSDRKTTVGVEFATMVVTHPDGKRIKAQIWDTAGQERYRAITSSHYKRASGALLVYDVTSRSSFENAERVWLRELRNAADSTSSLLDCLVIVGNKVDL---PNAEVT-EGEQEASASRMGLASSARVSAKTGQGVDKAFERLILRVYEVEHGRGEQAAPPTEAPPRGIVLADSKPPVSQENNDCC 687
            YD L+K+VLVGD  VGKTNLLA +T+ D     D +  +   F + RK T+GVEF T ++THP+GKRIKAQIWDTAGQERYRAITSSHY+RA+GAL+VYDV+SR+SF+NA+  WL+ELRN+AD+ S+LL CL++VGNK+DL   P+ +V  E + +A+ +  G     R SAKTGQ V +AFE+LI+ VY  +  R    A P + P    V   S P   ++ N+CC
Sbjct:   36 YDELYKVVLVGDPGVGKTNLLAYFTASDDEMAIDTSTNASKIFSNVRKPTIGVEFGTKIITHPNGKRIKAQIWDTAGQERYRAITSSHYRRAAGALIVYDVSSRTSFDNAQSHWLKELRNSADTNSTLLSCLMLVGNKIDLALDPSVQVVAEEDHDAAVAAAGDVLGTRASAKTGQNVVEAFEKLIIEVYNQDKARN---AKPVDVPAAAAVDL-SAPAAQKKKNNCC 259          
BLAST of mRNA_M-pyrifera_M_contig12772.5583.1 vs. uniprot
Match: A0A024UAY6_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A024UAY6_9STRA)

HSP 1 Score: 225 bits (573), Expect = 6.090e-71
Identity = 121/232 (52.16%), Postives = 160/232 (68.97%), Query Frame = 1
Query:    7 SRPSLEYDYLFKIVLVGDAAVGKTNLLACYTSQDKRPRADGTVPS---FRSDRKTTVGVEFATMVVTHPDGKRIKAQIWDTAGQERYRAITSSHYKRASGALLVYDVTSRSSFENAERVWLRELRNAADSTSSLLDCLVIVGNKVDLPNAE--VTEGEQEASASRMGLASSARVSAKTGQGVDKAFERLILRVYEVEHGRGEQAAPPTEAPPRGIVLADSKPPVSQENNDCC 687
            + P  +YD L+K+VLVGD  VGKTNLLA +T+ D+    D +  +   F + RK T+GVEF T ++THP+GKRIKAQIWDTAGQERYRAITSSHY+RA+GAL+VYDV+SR+SF+NA+  WL+ELRN+AD+ S+LL CL++VGNK+DL  A+  VT  + E++          R SAKTGQ V +AFE+L++ VY  +  R    A P E P     L  S P   ++ N CC
Sbjct:    2 AAPDQQYDELYKVVLVGDPGVGKTNLLAYFTASDEDMAIDASTNASKIFSNVRKPTIGVEFGTKIITHPNGKRIKAQIWDTAGQERYRAITSSHYRRAAGALIVYDVSSRTSFDNAQGHWLKELRNSADTNSTLLSCLMLVGNKIDLDPADTVVTPEDHESAVLAADGILDIRASAKTGQNVVEAFEKLVIEVYNQDKARN---ATPEEKP---SALDLSAPVEKKKKNSCC 227          
BLAST of mRNA_M-pyrifera_M_contig12772.5583.1 vs. uniprot
Match: A0A067CD03_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CD03_SAPPC)

HSP 1 Score: 221 bits (564), Expect = 1.410e-69
Identity = 117/230 (50.87%), Postives = 156/230 (67.83%), Query Frame = 1
Query:   22 EYDYLFKIVLVGDAAVGKTNLLACYTSQDKRPRADGTVPSFR----SDRKTTVGVEFATMVVTHPDGKRIKAQIWDTAGQERYRAITSSHYKRASGALLVYDVTSRSSFENAERVWLRELRNAADSTSSLLDCLVIVGNKVDLPN----AEVTEGEQEASASRMGLASSARVSAKTGQGVDKAFERLILRVYEVEHGRGEQAAPPTEAPPRGIVLADSKPPVSQENNDCC 687
            +YD L+K+VLVGD  VGKTNLLA +T+ ++    D +  + +    S RK T+GVEF T ++THP+GKRIKAQIWDTAGQERYRAITSSHY+RA+GAL+VYDV+SR++F+NA+  WL+ELRN+AD+ S+LL CL++VGNK+DL      A V   E+  +A         R SAKTG+ V +AFE LI+ VY  +  R       T AP   +V   +KPP  ++   CC
Sbjct:    3 QYDELYKVVLVGDPGVGKTNLLAYFTATEEEMAVDASTNASKIFSSSVRKPTIGVEFGTKIITHPNGKRIKAQIWDTAGQERYRAITSSHYRRAAGALVVYDVSSRATFDNAQTHWLKELRNSADNNSTLLSCLMLVGNKIDLTEGINGAPVVAAEEHDAAMAAAGVHGVRASAKTGENVVQAFENLIIEVYNQDKARN------TPAPMEPVVDLTAKPPTKKKLPACC 226          
BLAST of mRNA_M-pyrifera_M_contig12772.5583.1 vs. uniprot
Match: A0A1W0A2A3_9STRA (Rab11/RabA-family small GTPase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A2A3_9STRA)

HSP 1 Score: 218 bits (555), Expect = 3.360e-68
Identity = 119/230 (51.74%), Postives = 156/230 (67.83%), Query Frame = 1
Query:   22 EYDYLFKIVLVGDAAVGKTNLLACYTSQDKRPRADGTVPS---FRSDRKTTVGVEFATMVVTHPDGKRIKAQIWDTAGQERYRAITSSHYKRASGALLVYDVTSRSSFENAERVWLRELRNAADSTSSLLDCLVIVGNKVDLPNAE-----VTEGEQEASASRMGLASSARVSAKTGQGVDKAFERLILRVYEVEHGRGEQAAPPTEAPPRGIVLADSKPPVSQENNDCC 687
            +YD L+K+VLVGD  VGKTNLLA +T+ ++    D    +   F + RK T+GVEF T ++THP+GKRIKAQIWDTAGQERYRAITSSHY+RA+GAL+VYDVTS+++FENA+  WL+ELRN+ADS S+LL CL++VGNK+DL  A+     V   + EA+A   G+ +  R SAKTG+ V  AFE+LI+ VY  +  R    A  +  P     L D    V  +   CC
Sbjct:    3 QYDELYKVVLVGDPGVGKTNLLAYFTATEEEMAMDAETNASKIFSAVRKPTIGVEFGTKIITHPNGKRIKAQIWDTAGQERYRAITSSHYRRAAGALVVYDVTSKATFENAQCHWLKELRNSADSNSTLLSCLMLVGNKIDLVAADNASTIVPPEDHEAAAKAEGVMAM-RASAKTGENVVAAFEQLIIEVYNQDKNRTAPVATESATP-----LVDLNAKVPTKKKSCC 226          
BLAST of mRNA_M-pyrifera_M_contig12772.5583.1 vs. uniprot
Match: A0A6S9ECQ7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9ECQ7_HETAK)

HSP 1 Score: 216 bits (550), Expect = 1.640e-67
Identity = 110/188 (58.51%), Postives = 142/188 (75.53%), Query Frame = 1
Query:   16 SLEYDYLFKIVLVGDAAVGKTNLLACYTSQDKRPRADGTVPSFRSDRKTTVGVEFATMVVTHPDGKRIKAQIWDTAGQERYRAITSSHYKRASGALLVYDVTSRSSFENAERVWLRELRNAADSTSSLLDCLVIVGNKVDLPNAEVT-EGEQEASASRMGLASSARVSAKTGQGVDKAFERLILRVYE 576
            S +YD ++KIVLVGD  VGKTNLL+C+TS  K    +G V SF  +RK TVGVEFA+ +V HP+G RIKAQIWDTAGQERY AIT SHY+RA+GALLVYDVT+R SF+NA+  WL+EL+ +ADS SSLL+  ++ GNK+DL +  V  + EQ ++A+ +GL+     SA+ G  VD AFE LIL+VY+
Sbjct:   10 SEQYDVMYKIVLVGDPGVGKTNLLSCFTSYRKDTSENGAVVSFNENRKPTVGVEFASWIVKHPNGDRIKAQIWDTAGQERYNAITKSHYRRAAGALLVYDVTNRKSFDNAKNWWLKELKESADSESSLLENTLLCGNKIDLVDKRVVHDAEQASAAAGLGLSMHQSTSAREGTNVDDAFETLILQVYD 197          
BLAST of mRNA_M-pyrifera_M_contig12772.5583.1 vs. uniprot
Match: A0A024U937_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U937_9STRA)

HSP 1 Score: 211 bits (538), Expect = 4.230e-66
Identity = 108/191 (56.54%), Postives = 144/191 (75.39%), Query Frame = 1
Query:    7 SRPSLEYDYLFKIVLVGDAAVGKTNLLACYTSQDKRPRADGTVPS---FRSDRKTTVGVEFATMVVTHPDGKRIKAQIWDTAGQERYRAITSSHYKRASGALLVYDVTSRSSFENAERVWLRELRNAADSTSSLLDCLVIVGNKVDLPNAE--VTEGEQEASASRMGLASSARVSAKTGQGVDKAFERLIL 564
            + P  +YD L+K+VLVGD  VGKTNLLA +T+ D+    D +  +   F + RK T+GVEF T ++THP+GKRIKAQIWDTAGQERYRAITSSHY+RA+GAL+VYDV+SR+SF+NA+  WL+ELRN+AD+ S+LL CL++VGNK+DL  A+  VT  + E++          R SAKTGQ V +AFE+L++
Sbjct:    2 AAPDQQYDELYKVVLVGDPGVGKTNLLAYFTASDEDMAIDASTNASKIFSNVRKPTIGVEFGTKIITHPNGKRIKAQIWDTAGQERYRAITSSHYRRAAGALIVYDVSSRTSFDNAQGHWLKELRNSADTNSTLLSCLMLVGNKIDLDPADTVVTPEDHESAVLAADGILDIRASAKTGQNVVEAFEKLVI 192          
BLAST of mRNA_M-pyrifera_M_contig12772.5583.1 vs. uniprot
Match: A0A1V9YMI8_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YMI8_9STRA)

HSP 1 Score: 207 bits (527), Expect = 6.620e-64
Identity = 118/236 (50.00%), Postives = 154/236 (65.25%), Query Frame = 1
Query:   22 EYDYLFKIVLVGDAAVGKTNLLACYTSQDKRPRADGTVPS---FR-------SDRKTTVGVEFATMVVTHPDGKRIKAQIWDTAGQERYRAITSSHYKRASGALLVYDVTSRSSFENAERVWLRELRNAADSTSSLLDCLVIVGNKVDLPN----AEVTEGEQEASASRMGLASSARVSAKTGQGVDKAFERLILRVYEVEHGRGEQAAPPTEAPPRGIVLADSKPPVSQENNDCC 687
            +YD L+K    GD  VGKTNLLA +T+ ++    D    +   FR       + RK T+GVEF T +VTHP+GKRIKAQIWDTAGQERYRAITSSHY+RA+GAL+VYDV+SRS+F+NA+  WL+ELRN+ADS S+LL CL++VGNK+DL N    A +   E   +A+        R SAKTG+ V +AFE LI+ VY  +  R   A  P EA P  ++   +K P  ++   CC
Sbjct:    3 QYDELYK----GDPGVGKTNLLAYFTATEEEMAMDTDTNASKIFRRLQDEESAVRKPTIGVEFGTKIVTHPNGKRIKAQIWDTAGQERYRAITSSHYRRAAGALVVYDVSSRSTFDNAQSHWLKELRNSADSNSTLLSCLMLVGNKIDLANDMSGAAIVSSEDHIAAAAAEGVMGTRASAKTGENVVQAFENLIIEVYNQDKARSAPA--PVEAAP--VIDLGAKAPTKKKMPACC 230          
BLAST of mRNA_M-pyrifera_M_contig12772.5583.1 vs. uniprot
Match: A0A7S2XV75_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XV75_9STRA)

HSP 1 Score: 206 bits (525), Expect = 7.280e-64
Identity = 106/189 (56.08%), Postives = 138/189 (73.02%), Query Frame = 1
Query:   13 PSLEYDYLFKIVLVGDAAVGKTNLLACYTSQDKR-PRADGTVPSFRSDRKTTVGVEFATMVVTHPDGKRIKAQIWDTAGQERYRAITSSHYKRASGALLVYDVTSRSSFENAERVWLRELRNAADSTSSLLDCLVIVGNKVDLPNAEVTEGEQEASASRMGLASSARVSAKTGQGVDKAFERLILRVYE 576
            P+  +D  FKIVLVGD  VGKTNLLA YTS  K  P A     ++   RK TVGVEFAT +V HP G RIKAQIWDTAGQERY +I  SHY+RA+GA++VYDVTS+ +FENA+R WL++++++A   S++++C+ +VGNK DL  AEVTE E + + + +GL    R SAKTG  VD+AFE+LI  VY+
Sbjct:    6 PAAAFDEQFKIVLVGDPGVGKTNLLAYYTSYRKGDPSA-----TYNEARKPTVGVEFATWIVRHPSGARIKAQIWDTAGQERYNSIVKSHYRRAAGAIVVYDVTSKKTFENAQRFWLQQIQDSASPDSNIMECITLVGNKTDL-QAEVTEAEHQTAMNSLGLPLEGRTSAKTGDNVDEAFEKLICLVYD 188          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12772.5583.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6B4_ECTSI8.190e-14088.65Rab11B, RAB family GTPase n=1 Tax=Ectocarpus silic... [more]
A0A6G0WZ29_9STRA1.020e-7251.69Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485LBE8_9STRA5.940e-7153.07Aste57867_18857 protein n=1 Tax=Aphanomyces stella... [more]
A0A024UAY6_9STRA6.090e-7152.16Uncharacterized protein n=5 Tax=Aphanomyces TaxID=... [more]
A0A067CD03_SAPPC1.410e-6950.87Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A1W0A2A3_9STRA3.360e-6851.74Rab11/RabA-family small GTPase n=1 Tax=Thraustothe... [more]
A0A6S9ECQ7_HETAK1.640e-6758.51Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A024U937_9STRA4.230e-6656.54Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A1V9YMI8_9STRA6.620e-6450.00Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A7S2XV75_9STRA7.280e-6456.08Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12772contigM-pyrifera_M_contig12772:5690..8757 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score402.5
Seed ortholog evalue1.3e-109
Seed eggNOG ortholog2880.D7G6B4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GTP binding
EggNOG OGsCOG1100@1,KOG0087@2759
Ec32 ortholog descriptionRab11B, RAB family GTPase
Ec32 orthologEc-10_001230.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size690
Cds size690
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12772.5583.1prot_M-pyrifera_M_contig12772.5583.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12772 5690..8757 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815791.263879-CDS-M-pyrifera_M_contig12772:5689..59461622815791.263879-CDS-M-pyrifera_M_contig12772:5689..5946Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12772 5690..5946 -
1692277571.319885-CDS-M-pyrifera_M_contig12772:5689..59461692277571.319885-CDS-M-pyrifera_M_contig12772:5689..5946Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12772 5690..5946 -
1622815791.2761214-CDS-M-pyrifera_M_contig12772:6345..65031622815791.2761214-CDS-M-pyrifera_M_contig12772:6345..6503Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12772 6346..6503 -
1692277571.338413-CDS-M-pyrifera_M_contig12772:6345..65031692277571.338413-CDS-M-pyrifera_M_contig12772:6345..6503Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12772 6346..6503 -
1622815791.288609-CDS-M-pyrifera_M_contig12772:6789..68231622815791.288609-CDS-M-pyrifera_M_contig12772:6789..6823Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12772 6790..6823 -
1692277571.3484066-CDS-M-pyrifera_M_contig12772:6789..68231692277571.3484066-CDS-M-pyrifera_M_contig12772:6789..6823Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12772 6790..6823 -
1622815791.3028557-CDS-M-pyrifera_M_contig12772:8242..83781622815791.3028557-CDS-M-pyrifera_M_contig12772:8242..8378Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12772 8243..8378 -
1692277571.3559797-CDS-M-pyrifera_M_contig12772:8242..83781692277571.3559797-CDS-M-pyrifera_M_contig12772:8242..8378Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12772 8243..8378 -
1622815791.3182833-CDS-M-pyrifera_M_contig12772:8652..87571622815791.3182833-CDS-M-pyrifera_M_contig12772:8652..8757Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12772 8653..8757 -
1692277571.3634028-CDS-M-pyrifera_M_contig12772:8652..87571692277571.3634028-CDS-M-pyrifera_M_contig12772:8652..8757Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12772 8653..8757 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12772.5583.1

>prot_M-pyrifera_M_contig12772.5583.1 ID=prot_M-pyrifera_M_contig12772.5583.1|Name=mRNA_M-pyrifera_M_contig12772.5583.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=230bp
MASRPSLEYDYLFKIVLVGDAAVGKTNLLACYTSQDKRPRADGTVPSFRS
DRKTTVGVEFATMVVTHPDGKRIKAQIWDTAGQERYRAITSSHYKRASGA
LLVYDVTSRSSFENAERVWLRELRNAADSTSSLLDCLVIVGNKVDLPNAE
VTEGEQEASASRMGLASSARVSAKTGQGVDKAFERLILRVYEVEHGRGEQ
AAPPTEAPPRGIVLADSKPPVSQENNDCC*
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mRNA from alignment at M-pyrifera_M_contig12772:5690..8757-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12772.5583.1 ID=mRNA_M-pyrifera_M_contig12772.5583.1|Name=mRNA_M-pyrifera_M_contig12772.5583.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3068bp|location=Sequence derived from alignment at M-pyrifera_M_contig12772:5690..8757- (Macrocystis pyrifera P11B4 male)
ATGGCTTCTCGCCCTTCTTTGGAGTATGACTACCTCTTCAAGATCGTCCT CGTGGGAGATGCCGCAGTAGGAAAAACGAACCTCCTGGCCTGCTATACTT CACAGGTGTTGTAATTTTGTTCTTTTATATTTTCTGATACGCTTGTGCCT CTACTTGAGAAAACTGAAACCTGTACCACTCTGGGCATAAATGTAGAGAC CGTTTGATATCCATATTAATATCAAAACAGTCCTTATATTTCCGTCTACA GTCGTTGGTAATCCGTCCTTACACGTAGGACGGATGGCCTTTCATAGCAC CCGCCCACTTTGAATAATCATGGCGGGCAACAGGCAACGATATCGACGAA TGCTGTTTTTGTCGACACTTGTAATGCAGGATAAACGCCCAAGAGCTGAT GGCACTGTGCCAAGCTTTAGGTCCGACCGAAAGACTACTGTTGGGGTAGA ATTCGCGACGATGGTGGTAACTCATCCTGACGGCAAGCGCATCAAAGCTC AGATTTGGGACACCGGTGAGTGGGCGATTTGACTTGATTACAAAGTGTAA CCGCATCCTTGTGACAGAAGCCGTAAACTTCACCCCGTCGTTGTTGTTGT CCCGTTCGTGCTGTTCGCCGTTCCTCAGGAGTCCCTTGGTACCTGACCTT GAGGGCTAGAGTCTTAAAAATTGTAGACCTCTACACAGAAGTTTCCAGCC TCGTACATATGTATACTGCTGTATACCTGGTACACATTTTTTTAGTGTCT ATTTCGAGCCAGTACAAGTATGTGTGACAGACAGCACAGCTACGTAGGAA ACTGTTGAAATATGGATGTAAAACCAGGGGACAACTAAAATTTGTTGTAG AATACTGAAATACTACAGTTGTAGTTTTATAAAATACGTGCACGTACATG AACACAAGGTGGTATTCTGTAGCTGGTATGTTGTTCACTGGCACAACAGC AGTACAAGGGGAGTTCGTTTCGAACAGAAGATGAGTTCATATTTTATTAT ACCAGTACGCAGGCAGCAGGACGTTCCCCTTTTCTCACGGTCAATGACAG GCGTTGGTATATTCGCTGTCCAGCTCAACTCGAATGAGGTTTTGACCCTC CATGGCCTTCTGGACTAGACTATCTCCCCCTCCCCTCCCCCCGGCACTTG CCTTCATGTTCATCGCCCCTAGGGTTCAGCATTCCCACTGCTCGTCGATT TTCATCGATGTTTGCCAACTTCTCTCGCACTTTCGGTGACGGAATAAGGC AAGGAGACTCAGAAAAGAAGAATTGTGCAATAAATGCGCCAGCTGATATT CGAACCCAAGCGCAACCAACCGCCAGCAGAGTGACCTTCTTCCGCTGGAT CACAGGGTCGCCCTGCTTGCGCACATTCCTTATTCAGTATGATACTCGTA GGTACAGAATTTCGAGTGAACAAGGAAATACAGTTTTGGAGGAGCAATTG ATTCCACCACGCCCCTGTGAAACCTCGATGAACGCCAAGACCTGCAAGCG GCTGGAAGTTGGTTCCTGGTGCGGCGCCGTTGAAATGGCGTTCCTTTTTT AGCTGCGCATCCCCCGAATGTTGTTTTTGTTAAAAAAAATCCTGCAGGTT AGCTAAAATACGTTAGACGATCGTAGATTCGAGCAGAACACACGCCCACG AAAGTGCTATAATACCCGCGCTTGGCACCGATGGGACTGGGTGGTATATT CCTGTCGTTAGGGTAAGTATTTGCCATTTGGTGGTCTAAGTCACGACTGG GGAGTACATATGACACCAGGTACTATTTTAAACATTACTTACTGGAGTAT ACGACGCAGGGAAATATCATTACTGTAATCACAGCACTGGGTGGGACCCC ATGTAGCCTAAATCAACCCTGCTTGCTCTCCTTCCGCTCCGCGTCTTTTT TTATTTGTCCATGCGCTTGTGCTCACGTCGTCAGCCGGTCAGGAGAGATA CAGGGCCATCACAAGCTCGTGAGTGTTGAACATGGAGCTGTACTCCCACA GGAGTGTATGATTGTTGCCCGAGCTTGTTTGAGTTGTTGCGTCTTGGGTT GGGAACTTACCACCGACGTTGTGGGTTCGTTGCTGCCGTGGCTGTCATAA TGACCGATGTGGGCAGCCGGCATTAATAAGAACATCCTATCTCAACAGTG GTCTGGGCATGTGCAGTAATTGGCTCGTCGTATAGTTCCACGTAGTGATT GCCCATCAAGCATATCGCTACTCGCTTACACCGTGCACGACCTGCGCGTA TCAGGCACTACAAGAGAGCGTCAGGGGCGCTGCTAGTCTACGACGTGACA AGTAGGTCAAGCTTTGAGAACGCTGAAAGGGTGTGGCTCCGGGAGCTCAG GAATGCGGCGGACTCGACAAGCAGCCTGCTCGATTGCCTTGTCATCGTCG GCAACAAAGTCGGTATGTTTGCCGAAATGATGCGCGACGATGCGGACTGC ATGCAGTCACCGATTATACCTCATATACCACTGAGCGTGTTTGTCAACAG TAGCGATATTTTCGCGGACGATTGGCTTCAGTCAACCATACCTGGTATTT TATTATATGATATCATGTTCAACCCTGATAACTGAGCATGCAGATGTCCC GCGTGCCCTCGGGTCTTCCGTTTCGATTATTGCGGGGGACCATAGTTAAT AGGACCTACCATGGTACACATAAAAACCTATATATTTACCTATTTTTACT AACAATATTTGGTCCTATTTACTGCGGTCCCCCGCTATAATCGTAGAGTA TGTTTTCCTTCTGGGCCATTGGTCGTACCGCTGACGAACGCATTCGGCAA TGCTCACCCAGATTTGCCAAACGCGGAGGTGACGGAAGGCGAGCAAGAGG CTAGCGCCTCCAGAATGGGACTGGCATCGTCTGCTCGAGTGTCTGCGAAG ACAGGACAAGGCGTAGACAAGGCGTTCGAACGCCTCATTTTGCGCGTTTA CGAAGTCGAGCATGGTCGAGGGGAGCAAGCTGCACCGCCGACAGAGGCAC CGCCGAGGGGCATAGTGTTGGCAGATTCCAAACCGCCGGTTTCGCAAGAG AACAACGACTGCTGCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12772:5690..8757-

>mRNA_M-pyrifera_M_contig12772.5583.1 ID=mRNA_M-pyrifera_M_contig12772.5583.1|Name=mRNA_M-pyrifera_M_contig12772.5583.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1380bp|location=Sequence derived from alignment at M-pyrifera_M_contig12772:5690..8757- (Macrocystis pyrifera P11B4 male)
ATGGCTTCTCGCCCTTCTTTGGAGTATGACTACCTCTTCAAGATCGTCCT
CGTGGGAGATGCCGCAGTAGGAAAAACGAACCTCCTGGCCTGCTATACTT
CACAGATGGCTTCTCGCCCTTCTTTGGAGTATGACTACCTCTTCAAGATC
GTCCTCGTGGGAGATGCCGCAGTAGGAAAAACGAACCTCCTGGCCTGCTA
TACTTCACAGGATAAACGCCCAAGAGCTGATGGCACTGTGCCAAGCTTTA
GGTCCGACCGAAAGACTACTGTTGGGGTAGAATTCGCGACGATGGTGGTA
ACTCATCCTGACGGCAAGCGCATCAAAGCTCAGATTTGGGACACCGGATA
AACGCCCAAGAGCTGATGGCACTGTGCCAAGCTTTAGGTCCGACCGAAAG
ACTACTGTTGGGGTAGAATTCGCGACGATGGTGGTAACTCATCCTGACGG
CAAGCGCATCAAAGCTCAGATTTGGGACACCGCCGGTCAGGAGAGATACA
GGGCCATCACAAGCTCCCGGTCAGGAGAGATACAGGGCCATCACAAGCTC
GCACTACAAGAGAGCGTCAGGGGCGCTGCTAGTCTACGACGTGACAAGTA
GGTCAAGCTTTGAGAACGCTGAAAGGGTGTGGCTCCGGGAGCTCAGGAAT
GCGGCGGACTCGACAAGCAGCCTGCTCGATTGCCTTGTCATCGTCGGCAA
CAAAGTCGGCACTACAAGAGAGCGTCAGGGGCGCTGCTAGTCTACGACGT
GACAAGTAGGTCAAGCTTTGAGAACGCTGAAAGGGTGTGGCTCCGGGAGC
TCAGGAATGCGGCGGACTCGACAAGCAGCCTGCTCGATTGCCTTGTCATC
GTCGGCAACAAAGTCGATTTGCCAAACGCGGAGGTGACGGAAGGCGAGCA
AGAGGCTAGCGCCTCCAGAATGGGACTGGCATCGTCTGCTCGAGTGTCTG
CGAAGACAGGACAAGGCGTAGACAAGGCGTTCGAACGCCTCATTTTGCGC
GTTTACGAAGTCGAGCATGGTCGAGGGGAGCAAGCTGCACCGCCGACAGA
GGCACCGCCGAGGGGCATAGTGTTGGCAGATTCCAAACCGCCGGTTTCGC
AAGAGAACAACGACTGCTGCTGAATTTGCCAAACGCGGAGGTGACGGAAG
GCGAGCAAGAGGCTAGCGCCTCCAGAATGGGACTGGCATCGTCTGCTCGA
GTGTCTGCGAAGACAGGACAAGGCGTAGACAAGGCGTTCGAACGCCTCAT
TTTGCGCGTTTACGAAGTCGAGCATGGTCGAGGGGAGCAAGCTGCACCGC
CGACAGAGGCACCGCCGAGGGGCATAGTGTTGGCAGATTCCAAACCGCCG
GTTTCGCAAGAGAACAACGACTGCTGCTGA
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