mRNA_M-pyrifera_M_contig127717.5582.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127717.5582.1
Unique NamemRNA_M-pyrifera_M_contig127717.5582.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig127717.5582.1 vs. uniprot
Match: A0A6V3BV71_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V3BV71_HETAK)

HSP 1 Score: 50.8 bits (120), Expect = 6.520e-5
Identity = 43/146 (29.45%), Postives = 70/146 (47.95%), Query Frame = 1 
Query:   25 LETEDGERVELPAPMAAQCTKVESEAIEDGDDRV-----ISVTHATHATLDSVIQFCTLELEEKMGELPQPLWLAD-----LDALLGSAKAGVVALSTED---LVKLTLAARQLGHDALEKLCVAKFAAMIKDKTSEEINTMFSTE 423
            L T DGE   + +   A+ +++    +ED D+ +     I + +     L  VI+FC L++EE M E+P+P+         +    G+   G+VA    D   L++L LAA+ L    L  L  A    +I +KT +EI  +F  E
Sbjct:   22 LVTSDGESFRI-SKAVARVSELVKNMMEDADETMQTQEEIRLPNLKGKVLAKVIEFCNLQVEEPMAEIPKPIKFGKQVRDVVQPAFGAYVDGMVA--ARDWLLLLQLVLAAQYLDVRPLADLTCAALGLLIMNKTPDEIRELFGVE 164
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127717.5582.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6V3BV71_HETAK6.520e-529.45Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127717contigM-pyrifera_M_contig127717:66..491 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue1.2e-07
Seed eggNOG ortholog2880.D7G1U6
KEGG koko:K03094
KEGG Pathwayko04110,ko04111,ko04114,ko04120,ko04141,ko04310,ko04341,ko04350,ko04710,ko05168,ko05200,map04110,map04111,map04114,map04120,map04141,map04310,map04341,map04350,map04710,map05168,map05200
KEGG ModuleM00379,M00380,M00381,M00382,M00387,M00407,M00411
Hectar predicted targeting categoryother localisation
EggNOG free text desc.modification-dependent protein catabolic process
EggNOG OGsCOG5201@1,KOG1724@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03036,ko04121
Exons1
Model size426
Cds size426
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815791.2291412-CDS-M-pyrifera_M_contig127717:65..4911622815791.2291412-CDS-M-pyrifera_M_contig127717:65..491Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127717 66..491 +
1692277571.3023777-CDS-M-pyrifera_M_contig127717:65..4911692277571.3023777-CDS-M-pyrifera_M_contig127717:65..491Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127717 66..491 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127717.5582.1prot_M-pyrifera_M_contig127717.5582.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127717 66..491 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127717.5582.1

>prot_M-pyrifera_M_contig127717.5582.1 ID=prot_M-pyrifera_M_contig127717.5582.1|Name=mRNA_M-pyrifera_M_contig127717.5582.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=142bp
MSGHGRFMLETEDGERVELPAPMAAQCTKVESEAIEDGDDRVISVTHATH
ATLDSVIQFCTLELEEKMGELPQPLWLADLDALLGSAKAGVVALSTEDLV
KLTLAARQLGHDALEKLCVAKFAAMIKDKTSEEINTMFSTEK
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mRNA from alignment at M-pyrifera_M_contig127717:66..491+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127717.5582.1 ID=mRNA_M-pyrifera_M_contig127717.5582.1|Name=mRNA_M-pyrifera_M_contig127717.5582.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=426bp|location=Sequence derived from alignment at M-pyrifera_M_contig127717:66..491+ (Macrocystis pyrifera P11B4 male)
ATGTCTGGACATGGAAGATTTATGCTCGAGACGGAGGATGGCGAGCGCGT
GGAGCTCCCGGCTCCGATGGCGGCTCAATGCACCAAAGTGGAGAGCGAGG
CGATTGAGGACGGCGACGACCGCGTGATCAGCGTGACGCACGCAACACAT
GCAACATTGGACTCTGTCATTCAGTTCTGCACGCTCGAGTTGGAGGAGAA
GATGGGGGAGCTGCCGCAGCCGTTGTGGCTGGCCGATCTGGACGCCCTGC
TCGGGAGCGCCAAAGCGGGAGTCGTGGCGTTGAGCACCGAGGATCTGGTC
AAGCTCACGCTAGCGGCTCGCCAGCTCGGACATGATGCGTTGGAGAAACT
GTGCGTGGCCAAGTTCGCGGCCATGATCAAGGACAAGACCTCTGAAGAAA
TCAACACCATGTTCTCCACCGAGAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127717:66..491+

>mRNA_M-pyrifera_M_contig127717.5582.1 ID=mRNA_M-pyrifera_M_contig127717.5582.1|Name=mRNA_M-pyrifera_M_contig127717.5582.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=852bp|location=Sequence derived from alignment at M-pyrifera_M_contig127717:66..491+ (Macrocystis pyrifera P11B4 male)
ATGTCTGGACATGGAAGATTTATGCTCGAGACGGAGGATGGCGAGCGCGT
GGAGCTCCCGGCTCCGATGGCGGCTCAATGCACCAAAGTGGAGAGCGAGG
CGATTGAGGACGGCGACGACCGCGTGATCAGCGTGACGCACGCAACACAT
GCAACATTGGACTCTGTCATTCAGTTCTGCACGCTCGAGTTGGAGGAGAA
GATGGGGGAGCTGCCGCAGCCGTTGTGGCTGGCCGATCTGGACGCCCTGC
TCGGGAGCGCCAAAGCGGGAGTCGTGGCGTTGAGCACCGAGGATCTGGTC
AAGCTCACGCTAGCGGCTCGCCAGCTCGGACATGATGCGTTGGAGAAACT
GTGCGTGGCCAAGTTCGCGGCCATGATCAAGGACAAGACCTCTGAAGAAA
TCAACACCATGTTCTCCACCGAGAAGATGTCTGGACATGGAAGATTTATG
CTCGAGACGGAGGATGGCGAGCGCGTGGAGCTCCCGGCTCCGATGGCGGC
TCAATGCACCAAAGTGGAGAGCGAGGCGATTGAGGACGGCGACGACCGCG
TGATCAGCGTGACGCACGCAACACATGCAACATTGGACTCTGTCATTCAG
TTCTGCACGCTCGAGTTGGAGGAGAAGATGGGGGAGCTGCCGCAGCCGTT
GTGGCTGGCCGATCTGGACGCCCTGCTCGGGAGCGCCAAAGCGGGAGTCG
TGGCGTTGAGCACCGAGGATCTGGTCAAGCTCACGCTAGCGGCTCGCCAG
CTCGGACATGATGCGTTGGAGAAACTGTGCGTGGCCAAGTTCGCGGCCAT
GATCAAGGACAAGACCTCTGAAGAAATCAACACCATGTTCTCCACCGAGA
AG
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