mRNA_M-pyrifera_M_contig127715.5581.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127715.5581.1
Unique NamemRNA_M-pyrifera_M_contig127715.5581.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig127715.5581.1 vs. uniprot
Match: W7TPS1_9STRA (Nicotinamide N-methyltransferase, putative n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TPS1_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.680e-11
Identity = 41/103 (39.81%), Postives = 55/103 (53.40%), Query Frame = 1 
Query:   13 LDVFYSARHMFMEPDREDDFEYALKGAEEG-----DVRHISLVGIRADLGMTLDCTGETVWNAAEPMAELLYGARGRDMLQGR---RILELGCGLGLCSIAAA 297
            +DV  + +      DR++ FEY    A EG     D   + L G + +LG  L+CTG T+W A E +   L+  R     QG+   RILELGCGLGLC + AA
Sbjct:   28 VDVRKAVQDSCAVMDRDECFEYVYGAAREGTDKVHDCVRVRLHGWKKELGQQLECTGLTMWRAGEDLGRYLWENRAMLFKQGQGRQRILELGCGLGLCGLVAA 130
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BLAST of mRNA_M-pyrifera_M_contig127715.5581.1 vs. uniprot
Match: A0A485L8G5_9STRA (Aste57867_17365 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L8G5_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 2.420e-9
Identity = 33/78 (42.31%), Postives = 48/78 (61.54%), Query Frame = 1 
Query:   61 EDDFEYALKGAEEGDVRHISLVGIRADLGMTLDCTGETVWNAAEPMAELLYGARGRDMLQGRRILELGCGLGLCSIAA 294
            ED F Y       GD   I L G+R D+G TL+ TG T+W A + +++ ++  + +D+  G+R+LELG GLGLC I A
Sbjct:   54 EDQFTYNF-----GDDISIRLNGLRRDIGQTLNSTGLTLWRAGDFLSDYMF--KNKDLFAGKRVLELGSGLGLCGILA 124
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BLAST of mRNA_M-pyrifera_M_contig127715.5581.1 vs. uniprot
Match: A0A7R9WE79_9STRA (Hypothetical protein n=2 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WE79_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.080e-8
Identity = 35/93 (37.63%), Postives = 50/93 (53.76%), Query Frame = 1 
Query:   40 MFMEPDREDDFEYALK-------GAEEGDVRHISLVGIRADLGMTLDCTGETVWNAAEPMAE-LLYGARGRDMLQGRRILELGCGLGLCSIAA 294
            +F + D  D FE+ ++       GA     + I L G + D G T   TG T+W AA  +A  ++   R  +M+ GR++LELG GLGLC I A
Sbjct:   46 LFADNDPRDCFEFRVRRHRKERDGAAAVTTKTIRLTGFKLDSGETAKSTGVTLWQAAPRLASFIMVPERASEMIAGRKVLELGAGLGLCGIVA 138
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BLAST of mRNA_M-pyrifera_M_contig127715.5581.1 vs. uniprot
Match: A0A6H5KIJ3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KIJ3_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.440e-8
Identity = 34/97 (35.05%), Postives = 50/97 (51.55%), Query Frame = 1 
Query:    7 DALDVFYSARHMFMEPDREDDFEYALKGAEEGDVRHISLVGIRADLGMTLDCTGETVWNAAEPMAELLYGARGRDMLQGRRILELGCGLGLCSIAAA 297
            D +DV    +       R  +F +      + +   I+L G+  +LG TL  TG TVW AA+ MA  ++    R    G+R++ELG GLGLC I A+
Sbjct:   35 DVVDVRLQVQERMDVKKRTHEFSFTFGDDGDDEQVCIALAGVNPELGQTLASTGLTVWRAAQEMARFMW--EHRRWFAGKRVVELGAGLGLCGILAS 129
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BLAST of mRNA_M-pyrifera_M_contig127715.5581.1 vs. uniprot
Match: A0A7S3K6T3_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K6T3_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 2.550e-6
Identity = 30/85 (35.29%), Postives = 46/85 (54.12%), Query Frame = 1 
Query:   37 HMFMEPDREDDFEYALKGAEEGDVR-HISLVGIRADLGMTLDCTGETVWNAAEPMAELLYGARGRDMLQGRRILELGCGLGLCSI 288
            H F E +   D+EY     + G++   I L G   D+G  + CTG+T+W   E +A+  +  R    +  R ++ELG GLGLCS+
Sbjct:   42 HNFGESEEVLDWEYR---NDIGEIEARIILRGYPRDMGQVVSCTGQTLWRGGELLADWCWQTRHDRRMWSRSVIELGAGLGLCSL 123
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BLAST of mRNA_M-pyrifera_M_contig127715.5581.1 vs. uniprot
Match: A0A7S3V6Q2_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V6Q2_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 5.440e-5
Identity = 28/65 (43.08%), Postives = 38/65 (58.46%), Query Frame = 1 
Query:  100 GDVRHISLVGIRADLGMTLDCTGETVWNAAEPMAELLYGARGRDMLQGRRILELGCGLGLCSIAA 294
            GD+  I L GIRA     L  TG T+W  +E + E  Y     +++QG+ ++ELG GLGLC I A
Sbjct:   50 GDIT-IDLNGIRAKYPHLLQSTGMTLWEGSEKLCE--YLCEHSEIVQGKTVVELGAGLGLCGIVA 111
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127715.5581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
W7TPS1_9STRA1.680e-1139.81Nicotinamide N-methyltransferase, putative n=1 Tax... [more]
A0A485L8G5_9STRA2.420e-942.31Aste57867_17365 protein n=1 Tax=Aphanomyces stella... [more]
A0A7R9WE79_9STRA1.080e-837.63Hypothetical protein n=2 Tax=Pseudictyota dubia Ta... [more]
A0A6H5KIJ3_9PHAE1.440e-835.05Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3K6T3_9STRA2.550e-635.29Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S3V6Q2_9STRA5.440e-543.08Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127715contigM-pyrifera_M_contig127715:174..470 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.4
Seed ortholog evalue1.4e-07
Seed eggNOG ortholog67593.Physo142291
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ribosomal protein L11 methyltransferase (PrmA)
EggNOG OGs3QDPY@4776,KOG2497@1,KOG2497@2759
Ec32 ortholog descriptionNicotinamide N-methyltransferase-like
Ec32 orthologEc-07_004540.1
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size297
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815791.1902156-CDS-M-pyrifera_M_contig127715:173..4701622815791.1902156-CDS-M-pyrifera_M_contig127715:173..470Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127715 174..470 -
1692277571.2906396-CDS-M-pyrifera_M_contig127715:173..4701692277571.2906396-CDS-M-pyrifera_M_contig127715:173..470Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127715 174..470 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127715.5581.1prot_M-pyrifera_M_contig127715.5581.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127715 174..470 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127715.5581.1

>prot_M-pyrifera_M_contig127715.5581.1 ID=prot_M-pyrifera_M_contig127715.5581.1|Name=mRNA_M-pyrifera_M_contig127715.5581.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=99bp
EYDALDVFYSARHMFMEPDREDDFEYALKGAEEGDVRHISLVGIRADLGM
TLDCTGETVWNAAEPMAELLYGARGRDMLQGRRILELGCGLGLCSIAAA
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mRNA from alignment at M-pyrifera_M_contig127715:174..470-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127715.5581.1 ID=mRNA_M-pyrifera_M_contig127715.5581.1|Name=mRNA_M-pyrifera_M_contig127715.5581.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=297bp|location=Sequence derived from alignment at M-pyrifera_M_contig127715:174..470- (Macrocystis pyrifera P11B4 male)
GAGTACGATGCACTCGATGTGTTCTACTCCGCCAGACACATGTTCATGGA
GCCAGATCGAGAGGATGACTTCGAGTACGCGCTCAAGGGCGCGGAAGAAG
GCGATGTACGCCACATCTCGCTCGTTGGCATCCGTGCCGACCTCGGAATG
ACTCTGGACTGCACTGGAGAAACTGTGTGGAACGCCGCAGAGCCCATGGC
GGAGCTCCTGTACGGCGCACGCGGACGAGACATGTTGCAAGGACGCCGCA
TCCTTGAACTCGGCTGCGGACTCGGACTCTGCTCCATTGCTGCCGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127715:174..470-

>mRNA_M-pyrifera_M_contig127715.5581.1 ID=mRNA_M-pyrifera_M_contig127715.5581.1|Name=mRNA_M-pyrifera_M_contig127715.5581.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=594bp|location=Sequence derived from alignment at M-pyrifera_M_contig127715:174..470- (Macrocystis pyrifera P11B4 male)
GAGTACGATGCACTCGATGTGTTCTACTCCGCCAGACACATGTTCATGGA
GCCAGATCGAGAGGATGACTTCGAGTACGCGCTCAAGGGCGCGGAAGAAG
GCGATGTACGCCACATCTCGCTCGTTGGCATCCGTGCCGACCTCGGAATG
ACTCTGGACTGCACTGGAGAAACTGTGTGGAACGCCGCAGAGCCCATGGC
GGAGCTCCTGTACGGCGCACGCGGACGAGACATGTTGCAAGGACGCCGCA
TCCTTGAACTCGGCTGCGGACTCGGACTCTGCTCCATTGCTGCCGCCGAG
TACGATGCACTCGATGTGTTCTACTCCGCCAGACACATGTTCATGGAGCC
AGATCGAGAGGATGACTTCGAGTACGCGCTCAAGGGCGCGGAAGAAGGCG
ATGTACGCCACATCTCGCTCGTTGGCATCCGTGCCGACCTCGGAATGACT
CTGGACTGCACTGGAGAAACTGTGTGGAACGCCGCAGAGCCCATGGCGGA
GCTCCTGTACGGCGCACGCGGACGAGACATGTTGCAAGGACGCCGCATCC
TTGAACTCGGCTGCGGACTCGGACTCTGCTCCATTGCTGCCGCC
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