mRNA_M-pyrifera_M_contig12771.5580.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12771.5580.1
Unique NamemRNA_M-pyrifera_M_contig12771.5580.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12771.5580.1 vs. uniprot
Match: D8LBI3_ECTSI (Mitochondrial import inner membrane translocase subunit TIM50 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBI3_ECTSI)

HSP 1 Score: 386 bits (992), Expect = 1.610e-127
Identity = 184/220 (83.64%), Postives = 201/220 (91.36%), Query Frame = 2 
Query:  458 WGWGTKILGASAAGLAVLGIAWQLKPDEVRKLLDDSPIDHLAIWMMSKVSLYSSPVKDKLLMDCPVPPGAIPPPTLVLDLEGTLLGITYTHKKGWRVAKRPGLDDFLKEMAQLYEIVVFTDSLGGLADEWITKMDPLVAVSQRLYRDGTRYIDGKHVKDLSALNRPLEQVVIIDDNADCISMQPENAIKVKTFSLEDGSDPTADTVLHDLAPFLRALATQ 1117
            WGWGTK++  ++ GLA LGIAWQLKPDE+RKLLDDSPIDH  IW M K +LYSSPVKDKLL+DCP+PPGA+PPPTLVLDLEGTLLG  YT KKGWRVAKRPGLD FLKEM+QLYEIVVFTDS+GGLADEWIT+MDP   +SQR+YRDGTRYIDGK+VKDLSALNRPLEQ +IIDDNADCISMQPENAIKVK FSLEDGSDPTADT L+DLAPFLRALATQ
Sbjct:  169 WGWGTKLVAGTSVGLAALGIAWQLKPDEMRKLLDDSPIDHFFIWFMGKWALYSSPVKDKLLLDCPLPPGALPPPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMSQLYEIVVFTDSMGGLADEWITQMDPQGTISQRVYRDGTRYIDGKYVKDLSALNRPLEQTLIIDDNADCISMQPENAIKVKAFSLEDGSDPTADTALYDLAPFLRALATQ 388
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BLAST of mRNA_M-pyrifera_M_contig12771.5580.1 vs. uniprot
Match: A0A835YRZ2_9STRA (Mitochondrial import inner membrane translocase subunit TIM50 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRZ2_9STRA)

HSP 1 Score: 185 bits (469), Expect = 2.080e-50
Identity = 98/227 (43.17%), Postives = 143/227 (63.00%), Query Frame = 2 
Query:  500 LAVLG---IAWQLKPDEVRKLLDDSPIDHLAIWMMSKVSL----YSSPVKDKLLMDCP---VPPGAIPPPTLVLDLEGTLLGITYTHKKGWRVAKRPGLDDFLKEMAQLYEIVVFTDSLGGLADEWITKMDPLVA-----------VSQRLYRDGTRYIDGKHVKDLSALNRPLEQVVIIDDNADCISMQPENAIKVKTFSLEDGSDPTADTVLHDLAPFLRALATQ 1117
            LAV+G   +AW+L  D++  L   SP+     W+ ++++     ++ P  DKLL D P   +PP    PPTLVLDLE TL+ + +  + GWRVA+RPG+++FL+EM+  YEIV+FT +  G A+  +T +DP V+            S RLYRD T + +G HVKDLS +NR ++ V+IIDD  +   +QP+N I++K + ++ G DP ADT L DL PFLRALA +
Sbjct:   93 LAVIGGGALAWRLWHDDIAALYRRSPLHAAGRWVNAQLAEIARPFTEPSSDKLLPDWPPSELPPDTPCPPTLVLDLENTLVHMDWHRRTGWRVARRPGVEEFLREMSMYYEIVIFTSAHVGSAEPIVTSLDPAVSRARGVEVSSGYTSHRLYRDATLFSNGTHVKDLSKINRDMKHVIIIDDEPEAFQLQPDNGIRIKPYEIKPGEDPHADTALTDLIPFLRALAME 319
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BLAST of mRNA_M-pyrifera_M_contig12771.5580.1 vs. uniprot
Match: A0A7J3D5D1_9ARCH (FCP1 homology domain-containing protein n=1 Tax=Nitrososphaeria archaeon TaxID=2268198 RepID=A0A7J3D5D1_9ARCH)

HSP 1 Score: 157 bits (396), Expect = 1.060e-41
Identity = 82/174 (47.13%), Postives = 115/174 (66.09%), Query Frame = 2 
Query:  587 WMMSKVSLYSSPVKDKLLMDCPVPPGAIPPPTLVLDLEGTLLGITYTHKKGWRVAKRPGLDDFLKEMAQLYEIVVFTDSLGGLADEWITKMDPLVAVSQRLYRDGTRYIDGKHVKDLSALNRPLEQVVIIDDNADCISMQPENAIKVKTFSLEDGSDPTADTVLHDLAPFLRAL 1108
            ++ S++  Y+ P  D+LL D  +PP A    TLVLDL+  L+   +T  +GWR  KRPG++DFLK+MAQ YE+VV+T  L   AD  + ++DP   +  RLYRD TRY++GKHV+DLS LNR L+QV++I  + D  ++QPENAIK+  ++ E   D    T L DL PFL A+
Sbjct:   65 YIESEMKKYADPPSDRLLPD--LPPHARHIKTLVLDLDDVLIHSDWTRARGWRTFKRPGVEDFLKDMAQYYELVVYTSQLPTYADPILDRLDPQRLLQYRLYRDSTRYVNGKHVRDLSMLNRDLKQVLLITASPDAYALQPENAIKLDKWTTEKSDD----TTLIDLLPFLEAI 232
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BLAST of mRNA_M-pyrifera_M_contig12771.5580.1 vs. uniprot
Match: A0A3R7KV46_9STRA (Mitochondrial import inner membrane translocase subunit TIM50 n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KV46_9STRA)

HSP 1 Score: 155 bits (391), Expect = 6.350e-40
Identity = 89/178 (50.00%), Postives = 118/178 (66.29%), Query Frame = 2 
Query:  602 VSLYSSPVKDKLLMDCPVP--PGAIPP-PTLVLDLEGTLLGITYTHKKGWRVAKRPGLDDFLKEMAQLYEIVVFTDSLGGLADEWITKMDPLVAVSQRLYRDGTRYIDGKHVKDLSALNRPLEQVVIIDDNADCISMQPENAIKVKTFSLEDGSDPTADTVLHDLAPFLRALATQVWP 1126
            V  ++ P + KLL D P+P  P   PP P LVLDLE TL+   ++ K GWR AKRPG+D+FL+ + Q YEIV+F+ + G  A+E + K+DP       L RD TRY++G HVKDLS+LNR L+QVVI+DD+     +QPENAI VK F+  +G D   D  L DL PFL+ALA++  P
Sbjct:  138 VKPFTDPSRLKLLPDWPIPQVPADTPPVPVLVLDLEDTLVHSEWSRKHGWRHAKRPGVDEFLETLCQYYEIVIFSQNYG--AEEIVQKLDPKQCALHILSRDATRYLNGAHVKDLSSLNRDLQQVVILDDDPAAYQLQPENAIPVKPFT--NGRDRD-DHELKDLIPFLKALASERVP 310
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BLAST of mRNA_M-pyrifera_M_contig12771.5580.1 vs. uniprot
Match: M2W7T1_GALSU (Mitochondrial import inner membrane translocase subunit TIM50 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2W7T1_GALSU)

HSP 1 Score: 151 bits (381), Expect = 1.210e-38
Identity = 80/179 (44.69%), Postives = 114/179 (63.69%), Query Frame = 2 
Query:  596 SKVSLYSSPVKDKLLMDCPVPP--GAIPPPTLVLDLEGTLLGITYTHKKGWRVAKRPGLDDFLKEMAQLYEIVVFTDSLGGLADEWITKMDPLVAVSQRLYRDGTRYIDGKHVKDLSALNRPLEQVVIIDDNADCISMQPENAIKVKTFSLEDGSDPTADTVLHDLAPFLRALATQVWP 1126
            SKV  ++ P ++KLL D P+P   G +PP TLVLDL+ TL+  T++   GW+ AKRPG+D FL  M+  YEIVV+T ++ G  +  + K+DP   +S RLYRD T+Y  G H+KDLS LNR L + +IIDD+A+C  +QP+N I++  F+ +       D  L DL PFL  +  +  P
Sbjct:  111 SKVRYFTEPSRNKLLPD-PMPQYAGGLPPRTLVLDLDETLVHSTWSRATGWKTAKRPGVDAFLAYMSSFYEIVVYTSAMPGYGEPILEKLDPNGYISHRLYRDATKYEKGVHLKDLSKLNRDLARTIIIDDDANCFRLQPDNGIRIAPFTGD-----VNDRYLLDLIPFLEYIVREDIP 283
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BLAST of mRNA_M-pyrifera_M_contig12771.5580.1 vs. uniprot
Match: I0YZL4_COCSC (Mitochondrial import inner membrane translocase subunit TIM50 n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YZL4_COCSC)

HSP 1 Score: 146 bits (369), Expect = 2.090e-38
Identity = 78/168 (46.43%), Postives = 108/168 (64.29%), Query Frame = 2 
Query:  599 KVSLYSSPVKDKLLMDCPVPPGAIPPPTLVLDLEGTLLGITYTHKKGWRVAKRPGLDDFLKEMAQLYEIVVFTDSLGGLADEWITKMDPLVAVSQRLYRDGTRYIDGKHVKDLSALNRPLEQVVIIDDNADCISMQPENAIKVKTFSLEDGSDPTADTVLHDLAPFLR 1102
            +V  YS P  + LL D P     +   TLVLDL+ TL+   +T  +GWR  KRPG +DFL++MAQ YE+VV+TD L   AD  + ++DP   +  RLYRD T+YI+GKHV++L+ LNR L++V++I  N D  S+Q +NAIK+K + LE     + DT L DL P L 
Sbjct:   14 QVKKYSDPPSEHLLPDLPAHARHVR--TLVLDLDDTLIHSDWTRGRGWRTFKRPGAEDFLRQMAQYYELVVYTDQLPTYADPILDRLDPQRFIQYRLYRDSTQYINGKHVRNLNYLNRDLDKVLLITANEDAYSLQADNAIKLKPWKLE-----SEDTALLDLLPLLE 174
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BLAST of mRNA_M-pyrifera_M_contig12771.5580.1 vs. uniprot
Match: A0A059LE39_9CHLO (Mitochondrial import inner membrane translocase subunit TIM50 (Fragment) n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LE39_9CHLO)

HSP 1 Score: 146 bits (369), Expect = 3.830e-38
Identity = 76/180 (42.22%), Postives = 112/180 (62.22%), Query Frame = 2 
Query:  587 WMMSKVSLYSSPVKDKLLMDCPVPPGAIPPPTLVLDLEGTLLGITYTHKKGWRVAKRPGLDDFLKEMAQLYEIVVFTDSLGGLADEWITKMDPLVAVSQRLYRDGTRYIDGKHVKDLSALNRPLEQVVIIDDNADCISMQPENAIKVKTFSLEDGSDPTADTVLHDLAPFLRALATQVWP 1126
            ++  ++  Y+ P  D LL D  +PP A    TLVLDL+G L+   +T ++GWR  KRPG++DFL  MAQ YE+V++T  L   AD  + ++DP   V  RLYRD T+Y+ G+HV+DLS LNR   QV+++  +A   ++QP++AIK++ + L+       DT L DL PFL A+     P
Sbjct:   29 YLEGELRKYADPPSDALLPD--LPPAARHVKTLVLDLDGVLVHSDWTRERGWRTFKRPGVEDFLGTMAQYYELVIYTSQLPTYADPILDRLDPQRLVQYRLYRDSTQYVGGRHVRDLSKLNRDPRQVLLLTSDAHAYALQPDSAIKLQPWKLQ-----AQDTTLLDLIPFLEAIVRTAVP 201
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BLAST of mRNA_M-pyrifera_M_contig12771.5580.1 vs. uniprot
Match: A0A8J9SQI8_9CHLO (Mitochondrial import inner membrane translocase subunit TI n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9SQI8_9CHLO)

HSP 1 Score: 150 bits (378), Expect = 7.910e-38
Identity = 78/170 (45.88%), Postives = 110/170 (64.71%), Query Frame = 2 
Query:  599 KVSLYSSPVKDKLLMDCPVPPGAIPPPTLVLDLEGTLLGITYTHKKGWRVAKRPGLDDFLKEMAQLYEIVVFTDSLGGLADEWITKMDPLVAVSQRLYRDGTRYIDGKHVKDLSALNRPLEQVVIIDDNADCISMQPENAIKVKTFSLEDGSDPTADTVLHDLAPFLRAL 1108
            ++  YS P  + LL D  +PP A    TLVLDL+ TL+   +T  +GWR  KRPG +DFL++MAQ YE+VV+TD L   AD  + ++DP   +  RLYRD T+YI+GKHV++L+ LNR LE+V++I  NAD   + P+NA+K+K + L+       DT L DL P L  +
Sbjct:  197 QIKKYSDPPSEHLLPD--LPPHARHVRTLVLDLDDTLIHSDWTRGRGWRTFKRPGAEDFLRQMAQYYELVVYTDQLPTYADPILDRLDPQRFIQYRLYRDSTQYINGKHVRNLNYLNRDLEKVLLITANADAYELHPDNAVKLKPWKLD-----AEDTALLDLLPLLEQI 359
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BLAST of mRNA_M-pyrifera_M_contig12771.5580.1 vs. uniprot
Match: E1ZJ53_CHLVA (Mitochondrial import inner membrane translocase subunit TIM50 (Fragment) n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZJ53_CHLVA)

HSP 1 Score: 142 bits (359), Expect = 2.700e-37
Identity = 74/164 (45.12%), Postives = 103/164 (62.80%), Query Frame = 2 
Query:  611 YSSPVKDKLLMDCPVPPGAIPPPTLVLDLEGTLLGITYTHKKGWRVAKRPGLDDFLKEMAQLYEIVVFTDSLGGLADEWITKMDPLVAVSQRLYRDGTRYIDGKHVKDLSALNRPLEQVVIIDDNADCISMQPENAIKVKTFSLEDGSDPTADTVLHDLAPFLR 1102
            Y+ P  D+LL D  +PP A    TLVLDL+  L+   +T  +GWR  KRPG++DF++ MAQ YE+VV+T  L   AD  + ++DP   +  RLYRD T+Y++GKHV+DLS LNR + QV+ +  + D  ++QPENAIK+             DT+L DL PFL 
Sbjct:   40 YADPPSDRLLPD--LPPNARHIKTLVLDLDDVLVHSDWTRGRGWRTFKRPGVEDFIRSMAQYYELVVYTSQLPTYADPILDRLDPQRMIQYRLYRDSTQYVNGKHVRDLSKLNRDMRQVLFVTADPDAYALQPENAIKLSK------EWKAGDTMLLDLLPFLE 195
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BLAST of mRNA_M-pyrifera_M_contig12771.5580.1 vs. uniprot
Match: A0A7S1BYC3_9STRA (Mitochondrial import inner membrane translocase subunit TIM50 n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BYC3_9STRA)

HSP 1 Score: 146 bits (369), Expect = 2.720e-37
Identity = 78/173 (45.09%), Postives = 113/173 (65.32%), Query Frame = 2 
Query:  611 YSSPVKDKLLMDCP---VPPGAIPPPTLVLDLEGTLLGITYTHKKGWRVAKRPGLDDFLKEMAQLYEIVVFTDSLGGLADEWITKMDPLVAVSQRLYRDGTRYIDGKHVKDLSALNRPLEQVVIIDDNADCISMQPENAIKVKTFSLEDGSDPTADTVLHDLAPFLRALATQV 1120
            ++ P  DKLL D P   VPP    P TLVLDLE TL+  T+  K GWR AKRPG+D FL++MAQ YEIV++T ++ G+A+  I  +D   A+   LYR+ TR+IDG HVKDLS+LNR +++++ ID++   + + P+N I+VK ++  D  + T DT L  + P L  +  +V
Sbjct:  152 FTKPHADKLLPDWPMPNVPPDLPCPHTLVLDLENTLVSSTWDRKHGWRHAKRPGVDQFLRKMAQYYEIVLYTSTIQGVAEPVIQNLDKQQAIMHALYRESTRFIDGVHVKDLSSLNRNVKKIIAIDNDEKALQLHPDNLIRVKPYT--DPRNRTDDT-LEKIMPILIEIVNKV 321
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12771.5580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBI3_ECTSI1.610e-12783.64Mitochondrial import inner membrane translocase su... [more]
A0A835YRZ2_9STRA2.080e-5043.17Mitochondrial import inner membrane translocase su... [more]
A0A7J3D5D1_9ARCH1.060e-4147.13FCP1 homology domain-containing protein n=1 Tax=Ni... [more]
A0A3R7KV46_9STRA6.350e-4050.00Mitochondrial import inner membrane translocase su... [more]
M2W7T1_GALSU1.210e-3844.69Mitochondrial import inner membrane translocase su... [more]
I0YZL4_COCSC2.090e-3846.43Mitochondrial import inner membrane translocase su... [more]
A0A059LE39_9CHLO3.830e-3842.22Mitochondrial import inner membrane translocase su... [more]
A0A8J9SQI8_9CHLO7.910e-3845.88Mitochondrial import inner membrane translocase su... [more]
E1ZJ53_CHLVA2.700e-3745.12Mitochondrial import inner membrane translocase su... [more]
A0A7S1BYC3_9STRA2.720e-3745.09Mitochondrial import inner membrane translocase su... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12771contigM-pyrifera_M_contig12771:1913..6674 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score315.1
Seed ortholog evalue2.2e-83
Seed eggNOG ortholog2880.D8LBI3
Preferred nameTIMM50
KEGG koko:K17496
KEGG TC3.A.8.1
Hectar predicted targeting categoryother localisation
GOsGO:0001836,GO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0004725,GO:0005048,GO:0005102,GO:0005126,GO:0005134,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005744,GO:0005886,GO:0006464,GO:0006470,GO:0006605,GO:0006626,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006839,GO:0006886,GO:0006915,GO:0006996,GO:0007005,GO:0007006,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0008637,GO:0009987,GO:0012501,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016311,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016791,GO:0017038,GO:0019538,GO:0019866,GO:0023052,GO:0030150,GO:0030943,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034613,GO:0035335,GO:0036211,GO:0042277,GO:0042578,GO:0042886,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044451,GO:0044455,GO:0044464,GO:0044743,GO:0044877,GO:0045184,GO:0046902,GO:0046907,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0055085,GO:0061024,GO:0065002,GO:0065007,GO:0065008,GO:0070013,GO:0070585,GO:0070727,GO:0070851,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072655,GO:0090559,GO:0097190,GO:0098796,GO:0098798,GO:0098800,GO:0140096,GO:1901564,GO:1990542
EggNOG free text desc.phosphoprotein phosphatase activity
EggNOG OGsCOG5190@1,KOG2832@2759
Ec32 ortholog descriptionTim50 homolog, mitochondrial inner membrane protein of TIM23 complex
Ec32 orthologEc-27_003880.1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000,ko03029
Exons5
Model size1141
Cds size552
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12771.5580.1prot_M-pyrifera_M_contig12771.5580.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12771 1913..6085 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815791.0974262-CDS-M-pyrifera_M_contig12771:1912..20471622815791.0974262-CDS-M-pyrifera_M_contig12771:1912..2047Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12771 1913..2047 -
1692277571.225108-CDS-M-pyrifera_M_contig12771:1912..20471692277571.225108-CDS-M-pyrifera_M_contig12771:1912..2047Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12771 1913..2047 -
1622815791.1071851-CDS-M-pyrifera_M_contig12771:2900..30621622815791.1071851-CDS-M-pyrifera_M_contig12771:2900..3062Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12771 2901..3062 -
1692277571.239279-CDS-M-pyrifera_M_contig12771:2900..30621692277571.239279-CDS-M-pyrifera_M_contig12771:2900..3062Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12771 2901..3062 -
1622815791.11664-CDS-M-pyrifera_M_contig12771:3785..38911622815791.11664-CDS-M-pyrifera_M_contig12771:3785..3891Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12771 3786..3891 -
1692277571.2502723-CDS-M-pyrifera_M_contig12771:3785..38911692277571.2502723-CDS-M-pyrifera_M_contig12771:3785..3891Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12771 3786..3891 -
1622815791.126901-CDS-M-pyrifera_M_contig12771:5590..57181622815791.126901-CDS-M-pyrifera_M_contig12771:5590..5718Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12771 5591..5718 -
1692277571.266235-CDS-M-pyrifera_M_contig12771:5590..57181692277571.266235-CDS-M-pyrifera_M_contig12771:5590..5718Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12771 5591..5718 -
1622815791.1400173-CDS-M-pyrifera_M_contig12771:6064..60851622815791.1400173-CDS-M-pyrifera_M_contig12771:6064..6085Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12771 6065..6085 -
1692277571.274112-CDS-M-pyrifera_M_contig12771:6064..60851692277571.274112-CDS-M-pyrifera_M_contig12771:6064..6085Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12771 6065..6085 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815791.150768-UTR-M-pyrifera_M_contig12771:6085..66741622815791.150768-UTR-M-pyrifera_M_contig12771:6085..6674Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12771 6086..6674 -
1692277571.2816417-UTR-M-pyrifera_M_contig12771:6085..66741692277571.2816417-UTR-M-pyrifera_M_contig12771:6085..6674Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12771 6086..6674 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12771.5580.1

>prot_M-pyrifera_M_contig12771.5580.1 ID=prot_M-pyrifera_M_contig12771.5580.1|Name=mRNA_M-pyrifera_M_contig12771.5580.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=184bp
MMSKVSLYSSPVKDKLLMDCPVPPGAIPPPTLVLDLEGTLLGITYTHKKG
WRVAKRPGLDDFLKEMAQLYEIVVFTDSLGGLADEWITKMDPLVAVSQRL
YRDGTRYIDGKHVKDLSALNRPLEQVVIIDDNADCISMQPENAIKVKTFS
LEDGSDPTADTVLHDLAPFLRALATQVWPHTSI*
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mRNA from alignment at M-pyrifera_M_contig12771:1913..6674-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12771.5580.1 ID=mRNA_M-pyrifera_M_contig12771.5580.1|Name=mRNA_M-pyrifera_M_contig12771.5580.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4762bp|location=Sequence derived from alignment at M-pyrifera_M_contig12771:1913..6674- (Macrocystis pyrifera P11B4 male)
CCAAGCTCCGCGTGCAGGGCGGCCCAACGCCGCTTTCTCGCGAAGAAGGC
AGCAGGGCGGAAGGGCCCACCGAAGCAGACCGCGGGGTGGGGGGGTCCAG
CACCAGCAGCGGTGAAACATGGCGGCGGTAGCGGTGGCGCGGGGGGGAGC
GGGGGCGGGAGCGGTATACCACCCGCTGCTCCACCAGCGGGTGCCAGAGG
CGCCGGTAGCACCGGTGGTGGTGGTGGCTTCACCAAGAGCGAAATGCTAG
CGGCGCGGAAGGCGCGGAAGGAAAGCGCAACAACGTCAGCGAACAGGGCG
GCGGCCGCGGCGGCCGCGTTGCCGGGGGCGGTGCCTTCAGCGGCGGCGGC
GGCGGGGGGGGGGGGGGGGGGGGGGGGCGGCAGGAAGAAGCGCGGCGGCG
GCGGCGGCGGCAGGGACGGGGAGCGCGGGGGGAGCGTCGCAAAGGGGACG
GGCCAGCTGGGGATGGGGCACGAAAATTCTTGGGGCGTCGGCGGCGGGCT
TGGCCGTGTTGGGGATCGCGTGGCAGCTGAAGCCCGACGAAGTGCGGAAG
CTGCTGGACGACAGCCCCATTGATCATTTGGCCATCTGGATGATGAGCAA
GGTTTCTCTGGTGAGAGCCGAAGTTTTTTGTGGTGGTAGAATTGTATGTT
TTGTTGGATTATCTATCCCATACGGTTGTGCGGCGGGGGGATCGGTTCGT
TTTCGTGCGCCTTCGAGTGTGTCCCGTTGTCGTTTTTAGCTTTTAACGAT
GCTTTCTTTTTCTTGTTTCCAGCACTCGTTGCTCTGCCCCGCCGGGCCCC
TCTCCGTCGTTCCGTCACTCCAAACTTCCTCATTGATTTTGTTTCCTACG
GCGGGAAACGGCGTGTTACCCCCCCCCCCTACTTCGGTCATGCATGACAT
GCGTCCCCCCCCCTCCATGCACCGGCCGCCTTTCGTGTCTGGGTTGCCAA
AAACAGTACTCGAGCCCGGTGAAAGACAAGCTCCTGATGGACTGTCCGGT
GCCGCCAGGGGCTATACCGCCGCCGACTCTGGTGCTTGACCTGGAGGGCA
CGCTGCTGGGCATCACCTACACCCACAAGAAAGGGTAAGGGCCAACCGGC
GGTCAGACCGACCGACCGACGACCGATAGACAAACCGACGAACAAACAGA
CCGACCGACCGACCGACGGAGAAATATGTCGGTTGCCTTTACGTATCCCC
CGGACCGGGACAATGTCAGCACGCGCGCGCCGAGTACAATCAACAACTTT
ATCATTTTCCGTACATATAGCAGTATGATAGGCGACATAGGCAATGCCGT
TGGATTTCAGAAGTAAAACAAGGATTTTTTTTGTTTGCGCGTGTTTGTTT
TCGCCGGGGGGGGGGGGTTCATGTTCTTGTGTCCGCTGTGGTAAAGTCGG
GCGGGCGTACGTCGGCGCGTGCGGTGGGATCCTACCGTCAGGGTAGGGTA
CGCTTTGACCAAGCCTGCGGTGTTGTTTGTATCCCCTCTAGAGATTCTTC
TGCTAGTGAGGACCTGTCGTACGGCAGACGAGAACCGCTACGACACTGAT
TAGTATTAGTATCTACAGTATGCTAACGCAACACTTTAGTTGTGATACTG
GTCTGCCATGGTACGTAGACTCGGGGTTTTACATTACGTGACGAAGGATT
ACTGTGCCGGGTGGCCTGTCTCCGGATGAATGATCAGAGCTGGGTGGCTA
GCCCTTCGGGGCGGTCGATGATGATAATACGGTACGGCTCGGGTAGTGGG
CAGTCGATGATGCTGATACGGCACGACTCGGGTCTACGATGCTTTCGTAA
ATCCGAGTCGTGTCGCATTATCATCATCGACTGCCCCGAAGGACGAGCCA
CCCAGTCGGGGATTCATCCAGGGATAAGTCAATCAGCACCGTAATCCCTC
GTCACATCGTATGACACCCCAAAATTTCCGTACAGCCGTACACACAAAGC
AAGCTCTTATTAGCAGGGGCCAGGCTCACATTTAAAAATATATATATGTG
AGGCAGGGTGTGTCTGTCCCAACACTTTATATCCCAGTTTAAGAAGACCA
AAAAAAATCATCACACATTTCGTGCAGAAAAAGCCGGGCCAAAAACTTTA
AGTGCCACGTGTCGCGAGGTGTGTTCGGCTAGCTCGCTGTCGTCACGCCT
CCACGTGTTTGTGGATATTTTCCCGACGACGTCGTGACACCGGTGTATAT
ATCGCGCAGTGCGCACAAAGATATGCCTAGTACGTAGTACGTATGTGTTT
TGTTCTTCGTGTATGCAACATCCCCGCGTTCATGGTATGATTGCAAACAT
GGAAGAGATCAGATCTCCATTTTTTCATTTGTATTTTATCTTTGACGGCA
GATGTCTCCCTGATCTGTAGAATATGCATGATCTTCTGCTGTAGATCGTG
CTGGCGGGTGGGACATATGCGTATGTCACGTTTTCTTGCGCTCGTATTTG
CCAGGTGGGATCTGTTATGTTTTGGCTCTCTCGCACAATCGTATATCATA
TCGGGAAAATGAAGATTGTAGATTACCTACTGCTGCTGCTGCTGAAGATC
GTGATCTTTGTCCGATATGTGCATGGTTGGTTGTGGGTTGTGGGCGGTGA
CGCCCGCCGCCCAGGCCTTGCCCTATCCTTTCGTCTTCCCGTCCTGCCAA
CCCTTAAGTCTCTGCACCCGTCTCCCCCCCTTCCTCTTCCTCTTCCTCCC
TCCTTCCCTCTCCGCTTGGCACGCCATTTGTTGTTGTTGTTGGGTCCCTT
ACGTGCTGGTTTGATACGTATCATGCTATGCAGGTGGAGGGTTGCCAAGC
GGCCGGGGTTGGACGACTTTCTGAAAGAGATGGCCCAGCTGTACGAGATC
GTTGTGTTCACCGACAGCCTGGGCGGGCTGGCCGATGAGGTGTGTGAGCT
CCCCCGCGAGTGTGTCCTTGCGTTTTTGATGGGGGGTGAAAGGAGGGGCT
TGTTCCGTCGGTGTGTGCATGTGAGGAGTGGAGGGGGCCGGCGGGGGGGG
AAGGGGGGGGGTTGTGTGTGCCCCGGGGGGGCTACGTAGTTATATTGTAT
TTTGGTGCTTTTTTCTCGAAGAGGATGTGATTTGTTTTAGATTTTTCGTC
AACGCGGCAAGTGGCAGCTGGCATGAACGACTCTTTGTAACAACAGCAGC
TATACCAGGGGTGGGGCAGGCGTGGGGTAGGGGTGGCGTGGGTTCGGCGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGCGCTTGACGGCCCCCGCG
GCCTTGTTTTTTTGGGCGCCGGAACCGGGGGCGCAACGNNNNNNNNNNGG
AGAGGGGGGGGGGGGGGGGCGGGGTGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGTGCAGGTGTGCTGCATCGCTTACCTGCCGC
ACGCGCTGTTTTTTCTTGGAGCCAGAAACTTGCGAGGAAACGGACGAAGA
TACCGTGTGGTGTATTGATCAACCCTAATCTTGCCGCGGCCACCGGCACG
GCCGCCGCCGCCGCCGTCTCCTTCGTTTCCCATCCTTACGCCCCCTCCCC
CCCCCACCCCGCGACGCCATCCCGCCTCCCACCCAACGTTGGTTTCGGTT
TTCAAATGACAGTGGATTACCAAGATGGACCCCCTCGTCGCCGTGAGCCA
GAGGCTTTACCGTGACGGGACGAGGTACATCGACGGCAAGCACGTCAAGG
ACCTCTCCGCGCTCAACCGGCCCCTGGAGCAGGTCGTCATCATCGACGAC
AACGCCGACTGCATTTCGATGCAGGTGTGGTGTGGGGGGGGTGGGTGGGG
CCGGGTGGGGCAAGATATTTCGGCGGCCGCCGTGCCTTTAGTCGTTTTTA
TTTTTTACGGGAATGGTTGTTTGGGGCTGCTGCTGGTGTTACTGTTCGTG
CTGCTGGTCTAGACTGCTAGCGACGGCTTAACATCATGCGATAGCGCTGT
GTAGAAGAAGCCAGAGTTTTGCCGCTTTCCTCTTTATCCGTTCACACACC
CGAGCCAGTAAGAAATGACGTGCTGTAGCAGTGGCGGACTGATCGACTGA
CTACACTCTAGAAATCGTTTTGGTTCGGATAGCTTGACGCGCGGCTCTCT
AAAGAGCCTGCCGCGAGTCCGCTCGAGGTTTCGACACCCCCTGGCCTCGT
TCTTATTTTCGTTTGCACTATATATTCATTATTCAAAAACATCAGCTGTG
AGGGCGAGGATTTCGCCATACGAAGTATTAATAGTTTCTCTAACTGGTGT
TGTTGATGCTATGATACAGCGGTGTGCTTTTTTGCGCGAAGAAGTGCGCC
TACTGCGTACGTACGCATATATGATGTTTTGCGGCCTTAAGAGACGAAGA
ATAACGTAAACCAGTACCAGGTACGTATATATGGAGAAGGAAAACTCTCC
TTCAACGAAGGCAATGGGTAGCGGCCAGATGTTAGGGGGTGCCATCGACC
GTTTTTGATCGTCGGTGGCCCCTTCCCCTGCCCTCCGTATTCTTGATGCG
GTCGTTGTTGCTGCTGACGATGACTGACGACTGACTGACCACACGCATCG
TGAGGGATTAAACATGCACCTTTTCCGCCCCGGCCGGATCCGCCACCACC
GCCGCCCCCCCCCCACCCCCCCCCCAGCCGGAAAATGCCATCAAGGTGAA
GACGTTTTCGCTTGAGGACGGCTCGGACCCCACGGCCGACACAGTCCTGC
ACGACTTGGCCCCATTCCTCAGGGCTCTCGCAACGCAGGTGTGGCCTCAC
ACCTCAATTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12771:1913..6674-

>mRNA_M-pyrifera_M_contig12771.5580.1 ID=mRNA_M-pyrifera_M_contig12771.5580.1|Name=mRNA_M-pyrifera_M_contig12771.5580.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1104bp|location=Sequence derived from alignment at M-pyrifera_M_contig12771:1913..6674- (Macrocystis pyrifera P11B4 male)
ATGATGAGCAAGGTTTCTCTGATGATGAGCAAGGTTTCTCTGTACTCGAG
CCCGGTGAAAGACAAGCTCCTGATGGACTGTCCGGTGCCGCCAGGGGCTA
TACCGCCGCCGACTCTGGTGCTTGACCTGGAGGGCACGCTGCTGGGCATC
ACCTACACCCACAAGAAAGGTACTCGAGCCCGGTGAAAGACAAGCTCCTG
ATGGACTGTCCGGTGCCGCCAGGGGCTATACCGCCGCCGACTCTGGTGCT
TGACCTGGAGGGCACGCTGCTGGGCATCACCTACACCCACAAGAAAGGGT
GGAGGGTTGCCAAGCGGCCGGGGTTGGACGACTTTCTGAAAGAGATGGCC
CAGCTGTACGAGATCGTTGTGTTCACCGACAGCCTGGGCGGGCTGGCCGA
TGAGGTGGAGGGTTGCCAAGCGGCCGGGGTTGGACGACTTTCTGAAAGAG
ATGGCCCAGCTGTACGAGATCGTTGTGTTCACCGACAGCCTGGGCGGGCT
GGCCGATGAGTGGATTACCAAGATGGACCCCCTCGTCGCCGTGAGCCAGA
GGCTTTACCGTGACGGGACGAGGTACATCGACGGCAAGCACGTCAAGGAC
CTCTCCGCGCTCAACCGGCCCCTGGAGCAGGTCGTCATCATCGACGACAA
CGCCGACTGCATTTCGATGCAGTGGATTACCAAGATGGACCCCCTCGTCG
CCGTGAGCCAGAGGCTTTACCGTGACGGGACGAGGTACATCGACGGCAAG
CACGTCAAGGACCTCTCCGCGCTCAACCGGCCCCTGGAGCAGGTCGTCAT
CATCGACGACAACGCCGACTGCATTTCGATGCAGCCGGAAAATGCCATCA
AGGTGAAGACGTTTTCGCTTGAGGACGGCTCGGACCCCACGGCCGACACA
GTCCTGCACGACTTGGCCCCATTCCTCAGGGCTCTCGCAACGCAGGTGTG
GCCTCACACCTCAATTTGACCGGAAAATGCCATCAAGGTGAAGACGTTTT
CGCTTGAGGACGGCTCGGACCCCACGGCCGACACAGTCCTGCACGACTTG
GCCCCATTCCTCAGGGCTCTCGCAACGCAGGTGTGGCCTCACACCTCAAT
TTGA
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