mRNA_M-pyrifera_M_contig127680.5571.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127680.5571.1
Unique NamemRNA_M-pyrifera_M_contig127680.5571.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127680.5571.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127680contigM-pyrifera_M_contig127680:91..417 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size327
Cds size306
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815790.663032-CDS-M-pyrifera_M_contig127680:90..3961622815790.663032-CDS-M-pyrifera_M_contig127680:90..396Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127680 91..396 -
1692277570.982075-CDS-M-pyrifera_M_contig127680:90..3961692277570.982075-CDS-M-pyrifera_M_contig127680:90..396Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127680 91..396 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815790.6800425-UTR-M-pyrifera_M_contig127680:396..4171622815790.6800425-UTR-M-pyrifera_M_contig127680:396..417Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig127680 397..417 -
1692277570.9940624-UTR-M-pyrifera_M_contig127680:396..4171692277570.9940624-UTR-M-pyrifera_M_contig127680:396..417Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig127680 397..417 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127680.5571.1prot_M-pyrifera_M_contig127680.5571.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127680 91..396 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127680.5571.1

>prot_M-pyrifera_M_contig127680.5571.1 ID=prot_M-pyrifera_M_contig127680.5571.1|Name=mRNA_M-pyrifera_M_contig127680.5571.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=102bp
MAQLYRRCKAEGCSVNAVLVAASSFAIVLVASRLQSTAGKLTGDSWRVSG
SFPVALRKASEGRLAENAVGVFLTGLEVESHCTSDSSLWGLARKVNEATE
RQ
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mRNA from alignment at M-pyrifera_M_contig127680:91..417-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127680.5571.1 ID=mRNA_M-pyrifera_M_contig127680.5571.1|Name=mRNA_M-pyrifera_M_contig127680.5571.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=327bp|location=Sequence derived from alignment at M-pyrifera_M_contig127680:91..417- (Macrocystis pyrifera P11B4 male)
AGGACACTGGGCGAGGAGCAGATGGCGCAGCTCTACCGCCGCTGCAAGGC
AGAGGGGTGCAGCGTCAACGCCGTGCTGGTGGCCGCCTCCTCCTTTGCCA
TCGTCCTCGTGGCCTCCCGCCTCCAGAGCACCGCTGGGAAGCTGACAGGA
GACTCGTGGAGAGTCTCTGGCTCTTTCCCTGTGGCCTTGCGCAAGGCATC
GGAGGGAAGACTGGCGGAGAATGCGGTGGGAGTGTTCCTCACCGGACTGG
AGGTGGAGAGCCACTGCACCAGCGATTCCTCACTGTGGGGCCTCGCGCGT
AAGGTGAACGAAGCGACAGAGCGACAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127680:91..417-

>mRNA_M-pyrifera_M_contig127680.5571.1 ID=mRNA_M-pyrifera_M_contig127680.5571.1|Name=mRNA_M-pyrifera_M_contig127680.5571.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=612bp|location=Sequence derived from alignment at M-pyrifera_M_contig127680:91..417- (Macrocystis pyrifera P11B4 male)
ATGGCGCAGCTCTACCGCCGCTGCAAGGCAGAGGGGTGCAGCGTCAACGC
CGTGCTGGTGGCCGCCTCCTCCTTTGCCATCGTCCTCGTGGCCTCCCGCC
TCCAGAGCACCGCTGGGAAGCTGACAGGAGACTCGTGGAGAGTCTCTGGC
TCTTTCCCTGTGGCCTTGCGCAAGGCATCGGAGGGAAGACTGGCGGAGAA
TGCGGTGGGAGTGTTCCTCACCGGACTGGAGGTGGAGAGCCACTGCACCA
GCGATTCCTCACTGTGGGGCCTCGCGCGTAAGGTGAACGAAGCGACAGAG
CGACAGATGGCGCAGCTCTACCGCCGCTGCAAGGCAGAGGGGTGCAGCGT
CAACGCCGTGCTGGTGGCCGCCTCCTCCTTTGCCATCGTCCTCGTGGCCT
CCCGCCTCCAGAGCACCGCTGGGAAGCTGACAGGAGACTCGTGGAGAGTC
TCTGGCTCTTTCCCTGTGGCCTTGCGCAAGGCATCGGAGGGAAGACTGGC
GGAGAATGCGGTGGGAGTGTTCCTCACCGGACTGGAGGTGGAGAGCCACT
GCACCAGCGATTCCTCACTGTGGGGCCTCGCGCGTAAGGTGAACGAAGCG
ACAGAGCGACAG
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