mRNA_M-pyrifera_M_contig127585.5564.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127585.5564.1
Unique NamemRNA_M-pyrifera_M_contig127585.5564.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig127585.5564.1 vs. uniprot
Match: A0A2E7K982_9PLAN (Uncharacterized protein n=4 Tax=Gimesia TaxID=1649453 RepID=A0A2E7K982_9PLAN)

HSP 1 Score: 142 bits (358), Expect = 3.580e-41
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 1
Query:   61 VLISIMSSLVPLPLSLSSPVEKDLSTPFPCQNRPCGCQSAKQCWKSCCCFTNREKIAWAKANRVEAP 261
            +LISIMSSLVPLPLSLSSPVEKDLSTPFPCQNRPCGCQSAKQCWKSCCCFTNREKIAWAKANRVEAP
Sbjct:    1 MLISIMSSLVPLPLSLSSPVEKDLSTPFPCQNRPCGCQSAKQCWKSCCCFTNREKIAWAKANRVEAP 67          
BLAST of mRNA_M-pyrifera_M_contig127585.5564.1 vs. uniprot
Match: A0A517WUF5_9PLAN (Uncharacterized protein n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WUF5_9PLAN)

HSP 1 Score: 119 bits (297), Expect = 1.240e-31
Identity = 53/87 (60.92%), Postives = 67/87 (77.01%), Query Frame = 1
Query:    1 MFTRLLLAKYHHARRWIGLFVLISIMSSLVPLPLSLSSPVEKDLSTPFPCQNRPCGCQSAKQCWKSCCCFTNREKIAWAKANRVEAP 261
            MF  L L +    RR + L VL ++ +S VPLP S  SP++KD STP+PCQNRPCGC+SA+QCWKSCCCF+N+EK+AW+KANRV  P
Sbjct:    1 MFVWLGLKRNVSVRRLVSLLVLFALCASFVPLPTSSKSPLKKDQSTPYPCQNRPCGCRSAEQCWKSCCCFSNKEKVAWSKANRVTPP 87          
BLAST of mRNA_M-pyrifera_M_contig127585.5564.1 vs. uniprot
Match: A0A518I7K2_9PLAN (Uncharacterized protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518I7K2_9PLAN)

HSP 1 Score: 113 bits (282), Expect = 2.400e-29
Identity = 52/87 (59.77%), Postives = 63/87 (72.41%), Query Frame = 1
Query:    1 MFTRLLLAKYHHARRWIGLFVLISIMSSLVPLPLSLSSPVEKDLSTPFPCQNRPCGCQSAKQCWKSCCCFTNREKIAWAKANRVEAP 261
            MF  L   +   ARR + L VL+S  +S VPLP++  SPVEKD S  +PCQNRPCGCQSA+ CWK CCCFTN+EK+AWA+AN V  P
Sbjct:    1 MFVWLDNLRRFRARRLVSLLVLVSFCASFVPLPVASRSPVEKDQSAAYPCQNRPCGCQSAEACWKGCCCFTNQEKVAWAEANGVTPP 87          
BLAST of mRNA_M-pyrifera_M_contig127585.5564.1 vs. uniprot
Match: A0A1P8W9L0_9PLAN (Uncharacterized protein n=2 Tax=Fuerstiella marisgermanici TaxID=1891926 RepID=A0A1P8W9L0_9PLAN)

HSP 1 Score: 105 bits (263), Expect = 1.740e-26
Identity = 48/87 (55.17%), Postives = 61/87 (70.11%), Query Frame = 1
Query:    1 MFTRLLLAKYHHARRWIGLFVLISIMSSLVPLPLSLSSPVEKDLSTPFPCQNRPCGCQSAKQCWKSCCCFTNREKIAWAKANRVEAP 261
            MF+R + +     RR IGL +L S+ +S VPLP+  +  +EKD S PFPCQNRPCGC SA+QCWK CCCFTN +K+ WA+ N V  P
Sbjct:    1 MFSRRVYSGRGIGRRLIGLALLASLCASFVPLPMPNAPSLEKDQSQPFPCQNRPCGCASAEQCWKQCCCFTNAQKVVWARENGVTPP 87          
BLAST of mRNA_M-pyrifera_M_contig127585.5564.1 vs. uniprot
Match: A0A2E9VQS1_9PLAN (Uncharacterized protein n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E9VQS1_9PLAN)

HSP 1 Score: 105 bits (262), Expect = 3.300e-26
Identity = 48/87 (55.17%), Postives = 62/87 (71.26%), Query Frame = 1
Query:    1 MFTRLLLAKYHHARRWIGLFVLISIMSSLVPLPLSLSSPVEKDLSTPFPCQNRPCGCQSAKQCWKSCCCFTNREKIAWAKANRVEAP 261
            M  RLL       R+ I L V++ + +S++PLP+++    EKD S PFPCQ+RPCGC SAKQCWKSCCCFT+ +K+AWAKAN V  P
Sbjct:    1 MLPRLLKTIRITFRQAIALLVVLGMCASIIPLPMTVPVTAEKDRSIPFPCQDRPCGCASAKQCWKSCCCFTDSQKLAWAKANHVTPP 87          
BLAST of mRNA_M-pyrifera_M_contig127585.5564.1 vs. uniprot
Match: A0A356A8A5_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A356A8A5_9PLAN)

HSP 1 Score: 104 bits (260), Expect = 4.800e-26
Identity = 44/74 (59.46%), Postives = 58/74 (78.38%), Query Frame = 1
Query:   40 RRWIGLFVLISIMSSLVPLPLSLSSPVEKDLSTPFPCQNRPCGCQSAKQCWKSCCCFTNREKIAWAKANRVEAP 261
            R+ I L V++ + +S+VPLP+++    +KD STPFPCQ+RPCGC SAKQCWKSCCCF + +K+AWAKAN V  P
Sbjct:    9 RQAIALLVVLGMCASIVPLPMAVPVTADKDRSTPFPCQDRPCGCASAKQCWKSCCCFNDSQKLAWAKANHVTPP 82          
BLAST of mRNA_M-pyrifera_M_contig127585.5564.1 vs. uniprot
Match: UPI0011A0ADF1 (hypothetical protein n=1 Tax=Gimesia aquarii TaxID=2527964 RepID=UPI0011A0ADF1)

HSP 1 Score: 100 bits (249), Expect = 1.340e-25
Identity = 47/87 (54.02%), Postives = 60/87 (68.97%), Query Frame = 1
Query:    1 MFTRLLLAKYHHARRWIGLFVLISIMSSLVPLPLSLSSPVEKDLSTPFPCQNRPCGCQSAKQCWKSCCCFTNREKIAWAKANRVEAP 261
            MF+ L   K    R  I L +L +++ S  P  LS  + ++KD + PFPCQNRPCGCQSA QCWK+CCCFTNREK+ WA+AN+V  P
Sbjct:    1 MFSGLNNTKRRIVRSVICLVLLCALVFSFFPRSLSHPAGIQKDRTVPFPCQNRPCGCQSAGQCWKTCCCFTNREKLVWARANQVTPP 87          
BLAST of mRNA_M-pyrifera_M_contig127585.5564.1 vs. uniprot
Match: A0A5C5XHB0_9PLAN (Uncharacterized protein n=2 Tax=Rubinisphaera italica TaxID=2527969 RepID=A0A5C5XHB0_9PLAN)

HSP 1 Score: 103 bits (256), Expect = 2.130e-25
Identity = 44/74 (59.46%), Postives = 58/74 (78.38%), Query Frame = 1
Query:   40 RRWIGLFVLISIMSSLVPLPLSLSSPVEKDLSTPFPCQNRPCGCQSAKQCWKSCCCFTNREKIAWAKANRVEAP 261
            R+ I L V++ + +S+VPLP+++    +KD STPFPCQ+RPCGC SAKQCWKSCCCF + +K+AWAKAN V  P
Sbjct:   14 RQAIALLVVLGMCASIVPLPMAVPVISDKDRSTPFPCQDRPCGCASAKQCWKSCCCFNDSQKLAWAKANHVTPP 87          
BLAST of mRNA_M-pyrifera_M_contig127585.5564.1 vs. uniprot
Match: A0A142WZY3_9PLAN (Uncharacterized protein n=2 Tax=Planctomyces sp. SH-PL14 TaxID=1632864 RepID=A0A142WZY3_9PLAN)

HSP 1 Score: 102 bits (254), Expect = 4.540e-25
Identity = 45/77 (58.44%), Postives = 54/77 (70.13%), Query Frame = 1
Query:   31 HHARRWIGLFVLISIMSSLVPLPLSLSSPVEKDLSTPFPCQNRPCGCQSAKQCWKSCCCFTNREKIAWAKANRVEAP 261
            H  +R I L VL  +  +LVPLP++      KD S PFPC +RPCGC SA QCWK CCCFTN EK+AWA+ANR+E P
Sbjct:   11 HLTQRLIALAVLAGVCLALVPLPIASPPVAGKDRSQPFPCMDRPCGCASADQCWKGCCCFTNSEKVAWAQANRIELP 87          
BLAST of mRNA_M-pyrifera_M_contig127585.5564.1 vs. uniprot
Match: A0A517VA91_9PLAN (Uncharacterized protein n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VA91_9PLAN)

HSP 1 Score: 101 bits (251), Expect = 1.090e-24
Identity = 45/74 (60.81%), Postives = 53/74 (71.62%), Query Frame = 1
Query:   40 RRWIGLFVLISIMSSLVPLPLSLSSPVEKDLSTPFPCQNRPCGCQSAKQCWKSCCCFTNREKIAWAKANRVEAP 261
            RR IGL  L+S+ +S +PLPL      EKD S PFPCQ+RPCGC SA+QCWK CCCFTN EKI WA+ N +  P
Sbjct:   14 RRLIGLAALVSVCASFMPLPLGSIPSREKDQSQPFPCQHRPCGCASAEQCWKQCCCFTNAEKIVWARDNGIIPP 87          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127585.5564.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7K982_9PLAN3.580e-4198.51Uncharacterized protein n=4 Tax=Gimesia TaxID=1649... [more]
A0A517WUF5_9PLAN1.240e-3160.92Uncharacterized protein n=2 Tax=Gimesia aquarii Ta... [more]
A0A518I7K2_9PLAN2.400e-2959.77Uncharacterized protein n=2 Tax=Gimesia TaxID=1649... [more]
A0A1P8W9L0_9PLAN1.740e-2655.17Uncharacterized protein n=2 Tax=Fuerstiella marisg... [more]
A0A2E9VQS1_9PLAN3.300e-2655.17Uncharacterized protein n=2 Tax=Planctomycetaceae ... [more]
A0A356A8A5_9PLAN4.800e-2659.46Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
UPI0011A0ADF11.340e-2554.02hypothetical protein n=1 Tax=Gimesia aquarii TaxID... [more]
A0A5C5XHB0_9PLAN2.130e-2559.46Uncharacterized protein n=2 Tax=Rubinisphaera ital... [more]
A0A142WZY3_9PLAN4.540e-2558.44Uncharacterized protein n=2 Tax=Planctomyces sp. S... [more]
A0A517VA91_9PLAN1.090e-2460.81Uncharacterized protein n=1 Tax=Gimesia algae TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127585contigM-pyrifera_M_contig127585:244..504 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score89.7
Seed ortholog evalue7.1e-16
Seed eggNOG ortholog756272.Plabr_1608
Hectar predicted targeting categorysignal peptide
EggNOG OGs2EUCY@1,2J17V@203682,33MVC@2
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size261
Cds size261
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815790.3732195-CDS-M-pyrifera_M_contig127585:243..5041622815790.3732195-CDS-M-pyrifera_M_contig127585:243..504Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127585 244..504 +
1692277570.8341944-CDS-M-pyrifera_M_contig127585:243..5041692277570.8341944-CDS-M-pyrifera_M_contig127585:243..504Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127585 244..504 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127585.5564.1prot_M-pyrifera_M_contig127585.5564.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127585 244..504 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127585.5564.1

>prot_M-pyrifera_M_contig127585.5564.1 ID=prot_M-pyrifera_M_contig127585.5564.1|Name=mRNA_M-pyrifera_M_contig127585.5564.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=87bp
MFTRLLLAKYHHARRWIGLFVLISIMSSLVPLPLSLSSPVEKDLSTPFPC
QNRPCGCQSAKQCWKSCCCFTNREKIAWAKANRVEAP
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mRNA from alignment at M-pyrifera_M_contig127585:244..504+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127585.5564.1 ID=mRNA_M-pyrifera_M_contig127585.5564.1|Name=mRNA_M-pyrifera_M_contig127585.5564.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=261bp|location=Sequence derived from alignment at M-pyrifera_M_contig127585:244..504+ (Macrocystis pyrifera P11B4 male)
ATGTTCACTCGGCTCCTTTTAGCGAAATATCATCACGCACGCAGGTGGAT CGGCCTGTTTGTGTTGATTTCGATCATGTCTTCGCTGGTGCCGCTCCCAT TGAGTCTTTCTTCTCCCGTGGAAAAAGATCTTTCCACTCCTTTCCCCTGC CAGAATCGTCCTTGTGGCTGTCAATCTGCAAAACAGTGCTGGAAATCCTG TTGTTGCTTTACGAATCGTGAAAAAATCGCCTGGGCCAAGGCAAACCGCG TTGAGGCTCCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127585:244..504+

>mRNA_M-pyrifera_M_contig127585.5564.1 ID=mRNA_M-pyrifera_M_contig127585.5564.1|Name=mRNA_M-pyrifera_M_contig127585.5564.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig127585:244..504+ (Macrocystis pyrifera P11B4 male)
ATGTTCACTCGGCTCCTTTTAGCGAAATATCATCACGCACGCAGGTGGAT
CGGCCTGTTTGTGTTGATTTCGATCATGTCTTCGCTGGTGCCGCTCCCAT
TGAGTCTTTCTTCTCCCGTGGAAAAAGATCTTTCCACTCCTTTCCCCTGC
CAGAATCGTCCTTGTGGCTGTCAATCTGCAAAACAGTGCTGGAAATCCTG
TTGTTGCTTTACGAATCGTGAAAAAATCGCCTGGGCCAAGGCAAACCGCG
TTGAGGCTCCCATGTTCACTCGGCTCCTTTTAGCGAAATATCATCACGCA
CGCAGGTGGATCGGCCTGTTTGTGTTGATTTCGATCATGTCTTCGCTGGT
GCCGCTCCCATTGAGTCTTTCTTCTCCCGTGGAAAAAGATCTTTCCACTC
CTTTCCCCTGCCAGAATCGTCCTTGTGGCTGTCAATCTGCAAAACAGTGC
TGGAAATCCTGTTGTTGCTTTACGAATCGTGAAAAAATCGCCTGGGCCAA
GGCAAACCGCGTTGAGGCTCCC
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