mRNA_M-pyrifera_M_contig127584.5563.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127584.5563.1
Unique NamemRNA_M-pyrifera_M_contig127584.5563.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig127584.5563.1 vs. uniprot
Match: A0A5A8E749_CAFRO (CAP-Gly domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E749_CAFRO)

HSP 1 Score: 75.5 bits (184), Expect = 1.890e-14
Identity = 32/60 (53.33%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:    1 MPRPQGITCEVCGQKFFKHSFAIHQRQCIAKVEKSTVFCPHCECRLSKDEYEAHVTECKR 180
            MP P  + CE+CG+KF K S  IHQ+QC+ K E S   C  C   +SKDEY AHV +CKR
Sbjct:    1 MPPPVFVVCEICGKKFSKRSLGIHQKQCLKKAESSMTHCTICGLPVSKDEYSAHVDDCKR 60
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BLAST of mRNA_M-pyrifera_M_contig127584.5563.1 vs. uniprot
Match: A0A7S1HGX3_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HGX3_HEMAN)

HSP 1 Score: 56.2 bits (134), Expect = 6.240e-8
Identity = 23/63 (36.51%), Postives = 34/63 (53.97%), Query Frame = 1 
Query:    1 MPRPQGITCEVCGQKFFKHSFAIHQRQCIAKVEKSTVFCPHCECRLSKDEYEAHVTECKRAMA 189
            M  P+ +TC++CGQ FFK S   H +QC  K     + CP C     + E  +H+  C++A A
Sbjct:    1 MAPPRAVTCQMCGQGFFKASLPFHLKQCQIKSAAVPIPCPGCNVEYPRGELTSHMASCRQAKA 63
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127584.5563.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A5A8E749_CAFRO1.890e-1453.33CAP-Gly domain-containing protein n=3 Tax=Cafeteri... [more]
A0A7S1HGX3_HEMAN6.240e-836.51Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127584contigM-pyrifera_M_contig127584:82..279 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-27_000040.1
Exons1
Model size198
Cds size198
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815790.3399987-CDS-M-pyrifera_M_contig127584:81..2791622815790.3399987-CDS-M-pyrifera_M_contig127584:81..279Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127584 82..279 +
1692277570.8220804-CDS-M-pyrifera_M_contig127584:81..2791692277570.8220804-CDS-M-pyrifera_M_contig127584:81..279Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127584 82..279 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127584.5563.1prot_M-pyrifera_M_contig127584.5563.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127584 82..279 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127584.5563.1

>prot_M-pyrifera_M_contig127584.5563.1 ID=prot_M-pyrifera_M_contig127584.5563.1|Name=mRNA_M-pyrifera_M_contig127584.5563.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=66bp
MPRPQGITCEVCGQKFFKHSFAIHQRQCIAKVEKSTVFCPHCECRLSKDE
YEAHVTECKRAMAGAP
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mRNA from alignment at M-pyrifera_M_contig127584:82..279+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127584.5563.1 ID=mRNA_M-pyrifera_M_contig127584.5563.1|Name=mRNA_M-pyrifera_M_contig127584.5563.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=198bp|location=Sequence derived from alignment at M-pyrifera_M_contig127584:82..279+ (Macrocystis pyrifera P11B4 male)
ATGCCACGTCCTCAGGGAATCACATGTGAGGTGTGTGGTCAAAAGTTCTT
CAAGCACAGTTTCGCGATTCATCAACGGCAATGCATCGCCAAGGTGGAGA
AAAGCACCGTGTTTTGTCCCCATTGTGAGTGTCGGCTGAGCAAAGACGAG
TACGAGGCTCACGTGACAGAGTGCAAACGGGCCATGGCTGGCGCCCCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127584:82..279+

>mRNA_M-pyrifera_M_contig127584.5563.1 ID=mRNA_M-pyrifera_M_contig127584.5563.1|Name=mRNA_M-pyrifera_M_contig127584.5563.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig127584:82..279+ (Macrocystis pyrifera P11B4 male)
ATGCCACGTCCTCAGGGAATCACATGTGAGGTGTGTGGTCAAAAGTTCTT
CAAGCACAGTTTCGCGATTCATCAACGGCAATGCATCGCCAAGGTGGAGA
AAAGCACCGTGTTTTGTCCCCATTGTGAGTGTCGGCTGAGCAAAGACGAG
TACGAGGCTCACGTGACAGAGTGCAAACGGGCCATGGCTGGCGCCCCCAT
GCCACGTCCTCAGGGAATCACATGTGAGGTGTGTGGTCAAAAGTTCTTCA
AGCACAGTTTCGCGATTCATCAACGGCAATGCATCGCCAAGGTGGAGAAA
AGCACCGTGTTTTGTCCCCATTGTGAGTGTCGGCTGAGCAAAGACGAGTA
CGAGGCTCACGTGACAGAGTGCAAACGGGCCATGGCTGGCGCCCCC
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